Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03830 and MPMX19_03831 are separated by 3 nucleotides MPMX19_03831 and MPMX19_03832 are separated by 16 nucleotides MPMX19_03832 and MPMX19_03833 are separated by 112 nucleotides MPMX19_03833 and MPMX19_03834 are separated by 187 nucleotides MPMX19_03834 and MPMX19_03835 are separated by 56 nucleotides
MPMX19_03830: MPMX19_03830 - hypothetical protein, at 69,903 to 71,051
_03830
MPMX19_03831: MPMX19_03831 - Sulfate/thiosulfate import ATP-binding protein CysA, at 71,055 to 71,801
_03831
MPMX19_03832: MPMX19_03832 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 71,818 to 72,513
_03832
MPMX19_03833: MPMX19_03833 - hypothetical protein, at 72,626 to 73,021
_03833
MPMX19_03834: MPMX19_03834 - hypothetical protein, at 73,209 to 73,361
_03834
MPMX19_03835: MPMX19_03835 - Lipoprotein E, at 73,418 to 74,299
_03835
Position (kb) 71
72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 71.080 kb on - strand at 71.080 kb on - strand at 71.412 kb on + strand, within MPMX19_03831 at 71.412 kb on + strand, within MPMX19_03831 at 71.412 kb on + strand, within MPMX19_03831 at 71.412 kb on + strand, within MPMX19_03831 at 71.412 kb on + strand, within MPMX19_03831 at 71.412 kb on + strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.783 kb on + strand at 71.783 kb on + strand at 71.784 kb on - strand at 71.784 kb on - strand at 71.784 kb on - strand at 71.784 kb on - strand at 71.784 kb on - strand at 71.784 kb on - strand at 71.784 kb on - strand at 71.784 kb on - strand at 71.784 kb on - strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.788 kb on - strand at 71.788 kb on - strand at 71.788 kb on - strand at 71.788 kb on - strand at 71.788 kb on - strand at 71.788 kb on - strand at 71.788 kb on - strand at 71.788 kb on - strand at 71.816 kb on + strand at 71.816 kb on + strand at 71.817 kb on - strand at 71.817 kb on - strand at 71.817 kb on - strand at 71.848 kb on + strand at 71.848 kb on + strand at 71.848 kb on + strand at 71.849 kb on - strand at 71.899 kb on - strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.119 kb on - strand, within MPMX19_03832 at 72.346 kb on + strand, within MPMX19_03832 at 72.346 kb on + strand, within MPMX19_03832 at 72.346 kb on + strand, within MPMX19_03832 at 72.346 kb on + strand, within MPMX19_03832 at 72.346 kb on + strand, within MPMX19_03832 at 72.346 kb on + strand, within MPMX19_03832 at 72.346 kb on + strand, within MPMX19_03832 at 72.346 kb on + strand, within MPMX19_03832 at 72.347 kb on - strand, within MPMX19_03832 at 72.347 kb on - strand, within MPMX19_03832 at 72.347 kb on - strand, within MPMX19_03832 at 72.392 kb on - strand, within MPMX19_03832 at 72.392 kb on - strand, within MPMX19_03832 at 72.392 kb on - strand, within MPMX19_03832 at 72.500 kb on - strand at 72.500 kb on - strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.510 kb on - strand at 72.510 kb on - strand at 72.510 kb on - strand at 72.510 kb on - strand at 72.510 kb on - strand at 72.510 kb on - strand at 72.510 kb on - strand at 72.510 kb on - strand at 72.510 kb on - strand at 72.511 kb on + strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.552 kb on + strand at 72.553 kb on - strand at 72.553 kb on - strand at 72.776 kb on + strand, within MPMX19_03833 at 72.776 kb on + strand, within MPMX19_03833 at 72.776 kb on + strand, within MPMX19_03833 at 72.776 kb on + strand, within MPMX19_03833 at 72.776 kb on + strand, within MPMX19_03833 at 72.776 kb on + strand, within MPMX19_03833 at 72.776 kb on + strand, within MPMX19_03833 at 72.776 kb on + strand, within MPMX19_03833 at 72.776 kb on + strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.881 kb on + strand, within MPMX19_03833 at 72.881 kb on + strand, within MPMX19_03833 at 72.881 kb on + strand, within MPMX19_03833 at 72.881 kb on + strand, within MPMX19_03833 at 72.881 kb on + strand, within MPMX19_03833 at 72.881 kb on + strand, within MPMX19_03833 at 72.881 kb on + strand, within MPMX19_03833 at 72.881 kb on + strand, within MPMX19_03833 at 72.882 kb on - strand, within MPMX19_03833 at 72.882 kb on - strand, within MPMX19_03833 at 72.882 kb on - strand, within MPMX19_03833 at 72.882 kb on - strand, within MPMX19_03833 at 72.882 kb on - strand, within MPMX19_03833 at 72.923 kb on + strand, within MPMX19_03833 at 72.923 kb on + strand, within MPMX19_03833 at 72.923 kb on + strand, within MPMX19_03833 at 72.923 kb on + strand, within MPMX19_03833 at 72.923 kb on + strand, within MPMX19_03833 at 72.924 kb on - strand, within MPMX19_03833 at 72.924 kb on - strand, within MPMX19_03833 at 72.924 kb on - strand, within MPMX19_03833 at 72.924 kb on - strand, within MPMX19_03833 at 72.924 kb on - strand, within MPMX19_03833 at 72.941 kb on + strand, within MPMX19_03833 at 72.941 kb on + strand, within MPMX19_03833 at 72.942 kb on - strand, within MPMX19_03833 at 73.048 kb on + strand at 73.049 kb on - strand at 73.049 kb on - strand at 73.049 kb on - strand at 73.049 kb on - strand at 73.088 kb on - strand at 73.089 kb on + strand at 73.089 kb on + strand at 73.089 kb on + strand at 73.090 kb on - strand at 73.094 kb on - strand at 73.094 kb on - strand at 73.107 kb on - strand at 73.142 kb on + strand at 73.143 kb on - strand at 73.218 kb on + strand at 73.218 kb on + strand at 73.218 kb on + strand at 73.219 kb on - strand at 73.219 kb on - strand at 73.219 kb on - strand at 73.403 kb on + strand at 73.403 kb on + strand at 73.403 kb on + strand at 73.404 kb on - strand at 73.404 kb on - strand at 73.404 kb on - strand at 73.404 kb on - strand at 73.404 kb on - strand at 73.404 kb on - strand at 73.420 kb on - strand at 73.495 kb on + strand at 73.496 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 70,872 + MPMX19_03830 0.84 -0.5 70,872 + MPMX19_03830 0.84 -0.1 70,872 + MPMX19_03830 0.84 +0.2 70,872 + MPMX19_03830 0.84 -1.2 70,872 + MPMX19_03830 0.84 -0.6 70,872 + MPMX19_03830 0.84 +0.3 70,872 + MPMX19_03830 0.84 -0.4 70,872 + MPMX19_03830 0.84 +0.6 70,872 + MPMX19_03830 0.84 -0.8 70,872 + MPMX19_03830 0.84 -1.8 70,872 + MPMX19_03830 0.84 -2.5 70,872 + MPMX19_03830 0.84 -1.3 70,873 - MPMX19_03830 0.84 -0.1 70,873 - MPMX19_03830 0.84 +0.1 70,873 - MPMX19_03830 0.84 +1.2 70,873 - MPMX19_03830 0.84 -1.6 70,873 - MPMX19_03830 0.84 +0.2 70,873 - MPMX19_03830 0.84 -2.1 70,873 - MPMX19_03830 0.84 +0.6 70,873 - MPMX19_03830 0.84 -0.4 70,873 - MPMX19_03830 0.84 +1.2 71,080 - -0.0 71,080 - -0.8 71,412 + MPMX19_03831 0.48 -0.3 71,412 + MPMX19_03831 0.48 +0.7 71,412 + MPMX19_03831 0.48 +0.2 71,412 + MPMX19_03831 0.48 +0.2 71,412 + MPMX19_03831 0.48 -0.5 71,412 + MPMX19_03831 0.48 -0.3 71,413 - MPMX19_03831 0.48 -1.3 71,413 - MPMX19_03831 0.48 +0.4 71,413 - MPMX19_03831 0.48 -0.5 71,413 - MPMX19_03831 0.48 -0.5 71,413 - MPMX19_03831 0.48 -0.7 71,413 - MPMX19_03831 0.48 -0.6 71,413 - MPMX19_03831 0.48 -1.0 71,413 - MPMX19_03831 0.48 -0.3 71,413 - MPMX19_03831 0.48 +0.6 71,783 + -1.1 71,783 + -1.0 71,784 - -1.8 71,784 - +0.3 71,784 - -0.7 71,784 - -0.9 71,784 - -0.8 71,784 - -2.2 71,784 - +0.4 71,784 - -0.1 71,784 - +0.7 71,787 + -1.0 71,787 + -1.5 71,787 + -1.1 71,787 + -0.6 71,787 + -0.1 71,787 + -0.7 71,787 + -0.1 71,787 + +0.5 71,787 + -0.1 71,787 + -0.8 71,787 + +1.2 71,787 + -0.2 71,788 - +0.2 71,788 - -2.2 71,788 - +1.2 71,788 - -0.4 71,788 - +0.4 71,788 - -1.5 71,788 - -0.1 71,788 - +1.7 71,816 + -0.3 71,816 + +0.2 71,817 - +1.4 71,817 - -0.0 71,817 - -0.7 71,848 + +1.2 71,848 + -0.7 71,848 + -0.5 71,849 - -1.1 71,899 - MPMX19_03832 0.12 -1.1 72,055 + MPMX19_03832 0.34 -1.5 72,055 + MPMX19_03832 0.34 -0.2 72,055 + MPMX19_03832 0.34 -0.4 72,055 + MPMX19_03832 0.34 -0.8 72,055 + MPMX19_03832 0.34 -1.7 72,055 + MPMX19_03832 0.34 -0.4 72,055 + MPMX19_03832 0.34 -1.1 72,055 + MPMX19_03832 0.34 -1.7 72,055 + MPMX19_03832 0.34 -3.2 72,055 + MPMX19_03832 0.34 -0.7 72,055 + MPMX19_03832 0.34 +0.9 72,055 + MPMX19_03832 0.34 -0.2 72,055 + MPMX19_03832 0.34 -0.6 72,055 + MPMX19_03832 0.34 -1.5 72,056 - MPMX19_03832 0.34 -0.1 72,056 - MPMX19_03832 0.34 +1.2 72,056 - MPMX19_03832 0.34 -0.2 72,056 - MPMX19_03832 0.34 -1.2 72,056 - MPMX19_03832 0.34 -0.9 72,056 - MPMX19_03832 0.34 +0.3 72,056 - MPMX19_03832 0.34 -1.0 72,056 - MPMX19_03832 0.34 -0.8 72,056 - MPMX19_03832 0.34 -0.8 72,056 - MPMX19_03832 0.34 +0.6 72,056 - MPMX19_03832 0.34 -0.9 72,056 - MPMX19_03832 0.34 -1.1 72,056 - MPMX19_03832 0.34 -0.6 72,056 - MPMX19_03832 0.34 -1.9 72,056 - MPMX19_03832 0.34 -1.9 72,056 - MPMX19_03832 0.34 -1.3 72,119 - MPMX19_03832 0.43 +0.6 72,346 + MPMX19_03832 0.76 -0.0 72,346 + MPMX19_03832 0.76 -0.6 72,346 + MPMX19_03832 0.76 -3.1 72,346 + MPMX19_03832 0.76 -0.4 72,346 + MPMX19_03832 0.76 +1.0 72,346 + MPMX19_03832 0.76 -0.3 72,346 + MPMX19_03832 0.76 +0.8 72,346 + MPMX19_03832 0.76 +1.5 72,347 - MPMX19_03832 0.76 -1.6 72,347 - MPMX19_03832 0.76 +1.2 72,347 - MPMX19_03832 0.76 -0.1 72,392 - MPMX19_03832 0.82 -0.4 72,392 - MPMX19_03832 0.82 -0.2 72,392 - MPMX19_03832 0.82 +0.9 72,500 - +0.2 72,500 - +1.2 72,509 + +1.2 72,509 + -0.0 72,509 + -1.1 72,509 + -0.4 72,509 + +0.1 72,509 + -1.5 72,509 + +0.3 72,509 + -0.8 72,509 + -0.6 72,509 + -1.7 72,509 + -1.0 72,510 - -0.2 72,510 - -0.1 72,510 - -0.0 72,510 - -0.6 72,510 - -0.9 72,510 - +0.6 72,510 - +0.2 72,510 - +0.5 72,510 - -2.0 72,511 + -1.9 72,512 - -2.4 72,512 - -0.5 72,512 - -0.0 72,512 - -1.3 72,512 - -1.0 72,512 - -2.1 72,552 + -1.2 72,553 - -1.9 72,553 - -0.1 72,776 + MPMX19_03833 0.38 -1.1 72,776 + MPMX19_03833 0.38 -0.4 72,776 + MPMX19_03833 0.38 -1.4 72,776 + MPMX19_03833 0.38 -0.0 72,776 + MPMX19_03833 0.38 -1.3 72,776 + MPMX19_03833 0.38 -1.1 72,776 + MPMX19_03833 0.38 +0.1 72,776 + MPMX19_03833 0.38 +0.0 72,776 + MPMX19_03833 0.38 -0.3 72,777 - MPMX19_03833 0.38 -0.0 72,777 - MPMX19_03833 0.38 +1.2 72,777 - MPMX19_03833 0.38 +0.5 72,777 - MPMX19_03833 0.38 -0.8 72,777 - MPMX19_03833 0.38 -2.7 72,777 - MPMX19_03833 0.38 -0.3 72,777 - MPMX19_03833 0.38 -0.1 72,777 - MPMX19_03833 0.38 -0.3 72,777 - MPMX19_03833 0.38 +0.2 72,777 - MPMX19_03833 0.38 -0.6 72,777 - MPMX19_03833 0.38 +0.6 72,777 - MPMX19_03833 0.38 +0.7 72,777 - MPMX19_03833 0.38 -1.3 72,777 - MPMX19_03833 0.38 +1.6 72,881 + MPMX19_03833 0.64 +0.4 72,881 + MPMX19_03833 0.64 -1.4 72,881 + MPMX19_03833 0.64 -1.0 72,881 + MPMX19_03833 0.64 +0.5 72,881 + MPMX19_03833 0.64 -0.8 72,881 + MPMX19_03833 0.64 +0.6 72,881 + MPMX19_03833 0.64 -1.0 72,881 + MPMX19_03833 0.64 +1.2 72,882 - MPMX19_03833 0.65 +0.2 72,882 - MPMX19_03833 0.65 -1.0 72,882 - MPMX19_03833 0.65 +0.2 72,882 - MPMX19_03833 0.65 -0.1 72,882 - MPMX19_03833 0.65 -0.4 72,923 + MPMX19_03833 0.75 -1.1 72,923 + MPMX19_03833 0.75 +1.7 72,923 + MPMX19_03833 0.75 -0.4 72,923 + MPMX19_03833 0.75 -1.0 72,923 + MPMX19_03833 0.75 -1.2 72,924 - MPMX19_03833 0.75 +0.7 72,924 - MPMX19_03833 0.75 +0.8 72,924 - MPMX19_03833 0.75 -1.5 72,924 - MPMX19_03833 0.75 -0.8 72,924 - MPMX19_03833 0.75 -1.6 72,941 + MPMX19_03833 0.80 -0.4 72,941 + MPMX19_03833 0.80 -0.0 72,942 - MPMX19_03833 0.80 +1.2 73,048 + -1.6 73,049 - -0.4 73,049 - +1.2 73,049 - -0.0 73,049 - +0.1 73,088 - -0.3 73,089 + -0.1 73,089 + -0.2 73,089 + -0.9 73,090 - -1.0 73,094 - +1.6 73,094 - +1.1 73,107 - -2.2 73,142 + -0.6 73,143 - -0.7 73,218 + -0.1 73,218 + -1.3 73,218 + -0.8 73,219 - +0.1 73,219 - -0.4 73,219 - +0.8 73,403 + -1.0 73,403 + -0.1 73,403 + +0.2 73,404 - +0.0 73,404 - -0.9 73,404 - -0.7 73,404 - +0.3 73,404 - +0.1 73,404 - -1.4 73,420 - -2.3 73,495 + -1.1 73,496 - -0.2
Or see this region's nucleotide sequence