Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03825 and MPMX19_03826 are separated by 26 nucleotides MPMX19_03826 and MPMX19_03827 are separated by 40 nucleotides MPMX19_03827 and MPMX19_03828 are separated by 367 nucleotides
MPMX19_03825: MPMX19_03825 - IS5 family transposase IS4811, at 63,130 to 64,074
_03825
MPMX19_03826: MPMX19_03826 - putative methyltransferase, at 64,101 to 64,862
_03826
MPMX19_03827: MPMX19_03827 - hypothetical protein, at 64,903 to 66,408
_03827
MPMX19_03828: MPMX19_03828 - Aliphatic amidase expression-regulating protein, at 66,776 to 68,086
_03828
Position (kb) 64
65
66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 64.114 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.834 kb on + strand at 64.862 kb on + strand at 64.862 kb on + strand at 64.863 kb on - strand at 64.863 kb on - strand at 64.863 kb on - strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.129 kb on + strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.130 kb on - strand, within MPMX19_03827 at 65.183 kb on + strand, within MPMX19_03827 at 65.184 kb on - strand, within MPMX19_03827 at 65.184 kb on - strand, within MPMX19_03827 at 65.496 kb on + strand, within MPMX19_03827 at 65.534 kb on + strand, within MPMX19_03827 at 65.534 kb on + strand, within MPMX19_03827 at 65.534 kb on + strand, within MPMX19_03827 at 65.535 kb on - strand, within MPMX19_03827 at 65.535 kb on - strand, within MPMX19_03827 at 66.004 kb on + strand, within MPMX19_03827 at 66.005 kb on - strand, within MPMX19_03827 at 66.564 kb on - strand at 66.564 kb on - strand at 66.564 kb on - strand at 66.605 kb on + strand at 66.606 kb on - strand at 66.627 kb on + strand at 66.627 kb on + strand at 66.627 kb on + strand at 66.628 kb on - strand at 66.628 kb on - strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.667 kb on + strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.668 kb on - strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.683 kb on + strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.684 kb on - strand at 66.687 kb on + strand at 66.687 kb on + strand at 66.687 kb on + strand at 66.687 kb on + strand at 66.687 kb on + strand at 66.688 kb on - strand at 66.708 kb on + strand at 66.709 kb on - strand at 66.709 kb on - strand at 66.709 kb on - strand at 67.172 kb on + strand, within MPMX19_03828 at 67.172 kb on + strand, within MPMX19_03828 at 67.172 kb on + strand, within MPMX19_03828 at 67.172 kb on + strand, within MPMX19_03828 at 67.184 kb on + strand, within MPMX19_03828 at 67.184 kb on + strand, within MPMX19_03828 at 67.184 kb on + strand, within MPMX19_03828 at 67.185 kb on - strand, within MPMX19_03828 at 67.185 kb on - strand, within MPMX19_03828 at 67.217 kb on + strand, within MPMX19_03828 at 67.217 kb on + strand, within MPMX19_03828 at 67.217 kb on + strand, within MPMX19_03828 at 67.217 kb on + strand, within MPMX19_03828 at 67.217 kb on + strand, within MPMX19_03828 at 67.218 kb on - strand, within MPMX19_03828 at 67.218 kb on - strand, within MPMX19_03828 at 67.218 kb on - strand, within MPMX19_03828 at 67.262 kb on + strand, within MPMX19_03828 at 67.262 kb on + strand, within MPMX19_03828 at 67.263 kb on - strand, within MPMX19_03828 at 67.263 kb on - strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.313 kb on + strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.314 kb on - strand, within MPMX19_03828 at 67.319 kb on + strand, within MPMX19_03828 at 67.319 kb on + strand, within MPMX19_03828 at 67.319 kb on + strand, within MPMX19_03828 at 67.319 kb on + strand, within MPMX19_03828 at 67.319 kb on + strand, within MPMX19_03828 at 67.320 kb on - strand, within MPMX19_03828 at 67.320 kb on - strand, within MPMX19_03828 at 67.320 kb on - strand, within MPMX19_03828 at 67.352 kb on + strand, within MPMX19_03828 at 67.352 kb on + strand, within MPMX19_03828 at 67.352 kb on + strand, within MPMX19_03828 at 67.352 kb on + strand, within MPMX19_03828 at 67.352 kb on + strand, within MPMX19_03828 at 67.352 kb on + strand, within MPMX19_03828 at 67.353 kb on - strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.397 kb on + strand, within MPMX19_03828 at 67.398 kb on - strand, within MPMX19_03828 at 67.398 kb on - strand, within MPMX19_03828 at 67.398 kb on - strand, within MPMX19_03828 at 67.398 kb on - strand, within MPMX19_03828 at 67.398 kb on - strand, within MPMX19_03828 at 67.398 kb on - strand, within MPMX19_03828
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 64,114 + -0.1 64,813 + -0.1 64,813 + +0.7 64,813 + -0.7 64,813 + +0.0 64,813 + -0.2 64,813 + -1.3 64,813 + +0.2 64,814 - -0.4 64,814 - +1.3 64,814 - -2.0 64,814 - +1.1 64,814 - -1.5 64,814 - -1.3 64,814 - -0.4 64,814 - +0.9 64,814 - -0.1 64,814 - +0.4 64,814 - -1.1 64,814 - -2.2 64,834 + -0.7 64,862 + -1.1 64,862 + +0.1 64,863 - -0.3 64,863 - +0.8 64,863 - -2.3 64,904 + -0.2 64,904 + -0.9 64,904 + +0.6 64,904 + -0.1 64,904 + -1.4 64,904 + -0.4 64,904 + -1.6 64,904 + -0.5 64,904 + -0.1 64,904 + -1.3 64,904 + -0.1 64,904 + +0.3 64,904 + -0.4 64,904 + -0.5 64,904 + -1.0 64,904 + +0.2 64,904 + -2.4 64,904 + +0.0 64,904 + -0.7 64,904 + -2.1 64,904 + +0.1 64,904 + -0.1 64,904 + +0.2 64,904 + +2.0 64,904 + -1.1 64,904 + -1.0 64,904 + -0.1 64,904 + -0.8 64,904 + -0.8 64,904 + -0.4 64,904 + +0.9 64,904 + -2.0 64,904 + +1.2 64,904 + +0.3 64,905 - -0.5 64,905 - -1.1 64,905 - -0.1 64,905 - -0.8 64,905 - -0.1 64,905 - +0.2 64,905 - -0.1 64,905 - +1.3 64,905 - -1.5 64,905 - -0.8 64,905 - +0.7 64,905 - -1.1 64,905 - +0.2 64,905 - -0.7 64,905 - -0.7 64,905 - -2.3 64,905 - -0.1 64,905 - -0.3 64,905 - -1.3 64,905 - -0.4 64,905 - -0.9 64,905 - -0.6 64,905 - -0.6 64,905 - -0.8 64,905 - -0.1 64,905 - +0.8 64,905 - -0.1 65,129 + MPMX19_03827 0.15 -1.6 65,129 + MPMX19_03827 0.15 -0.4 65,129 + MPMX19_03827 0.15 +1.6 65,129 + MPMX19_03827 0.15 +0.4 65,129 + MPMX19_03827 0.15 -2.8 65,129 + MPMX19_03827 0.15 +0.7 65,129 + MPMX19_03827 0.15 +0.4 65,129 + MPMX19_03827 0.15 +0.8 65,129 + MPMX19_03827 0.15 -1.4 65,129 + MPMX19_03827 0.15 +0.2 65,129 + MPMX19_03827 0.15 -1.2 65,130 - MPMX19_03827 0.15 +0.1 65,130 - MPMX19_03827 0.15 -0.5 65,130 - MPMX19_03827 0.15 -1.3 65,130 - MPMX19_03827 0.15 -0.4 65,130 - MPMX19_03827 0.15 -0.3 65,130 - MPMX19_03827 0.15 +0.1 65,130 - MPMX19_03827 0.15 +0.1 65,130 - MPMX19_03827 0.15 -1.3 65,130 - MPMX19_03827 0.15 +1.3 65,130 - MPMX19_03827 0.15 -0.6 65,130 - MPMX19_03827 0.15 -0.8 65,130 - MPMX19_03827 0.15 +0.2 65,130 - MPMX19_03827 0.15 -1.8 65,130 - MPMX19_03827 0.15 +0.1 65,130 - MPMX19_03827 0.15 +0.2 65,130 - MPMX19_03827 0.15 -1.0 65,130 - MPMX19_03827 0.15 -0.6 65,183 + MPMX19_03827 0.19 -1.1 65,184 - MPMX19_03827 0.19 -1.5 65,184 - MPMX19_03827 0.19 +0.2 65,496 + MPMX19_03827 0.39 -1.1 65,534 + MPMX19_03827 0.42 -0.9 65,534 + MPMX19_03827 0.42 +0.8 65,534 + MPMX19_03827 0.42 -0.5 65,535 - MPMX19_03827 0.42 +1.0 65,535 - MPMX19_03827 0.42 -1.3 66,004 + MPMX19_03827 0.73 +0.4 66,005 - MPMX19_03827 0.73 -0.0 66,564 - +0.6 66,564 - -0.1 66,564 - +0.8 66,605 + -1.1 66,606 - -1.7 66,627 + +0.0 66,627 + -0.1 66,627 + +0.0 66,628 - +0.7 66,628 - +0.2 66,667 + -0.5 66,667 + -0.8 66,667 + -0.6 66,667 + +0.9 66,667 + -0.4 66,667 + +0.4 66,667 + -1.3 66,667 + +0.1 66,667 + -0.8 66,667 + -1.7 66,667 + -0.6 66,667 + -0.9 66,667 + -0.8 66,667 + -1.7 66,668 - -0.7 66,668 - +2.2 66,668 - +1.0 66,668 - -1.3 66,668 - +0.0 66,668 - +1.2 66,668 - -1.1 66,668 - -0.2 66,668 - -1.5 66,668 - -0.6 66,668 - -1.3 66,668 - -1.5 66,668 - -2.3 66,668 - +1.2 66,668 - -0.6 66,683 + +1.4 66,683 + -0.6 66,683 + -0.0 66,683 + -0.7 66,683 + -1.7 66,683 + -1.4 66,683 + -0.8 66,683 + +0.5 66,683 + -0.5 66,683 + -0.1 66,683 + -0.7 66,683 + -0.4 66,683 + -0.4 66,683 + -3.6 66,683 + -0.4 66,684 - -1.0 66,684 - -1.5 66,684 - -1.9 66,684 - -1.3 66,684 - -0.4 66,684 - -1.2 66,684 - -0.0 66,684 - -1.4 66,684 - -1.6 66,684 - -2.1 66,684 - -1.3 66,684 - -1.0 66,684 - -2.1 66,684 - -1.7 66,684 - -1.6 66,684 - -0.8 66,684 - +1.4 66,684 - +0.4 66,684 - -1.3 66,687 + +0.6 66,687 + +0.4 66,687 + +0.2 66,687 + +0.2 66,687 + -0.2 66,688 - -0.5 66,708 + +0.2 66,709 - -2.0 66,709 - +0.8 66,709 - +0.1 67,172 + MPMX19_03828 0.30 -1.3 67,172 + MPMX19_03828 0.30 -0.1 67,172 + MPMX19_03828 0.30 -1.6 67,172 + MPMX19_03828 0.30 -1.2 67,184 + MPMX19_03828 0.31 -0.4 67,184 + MPMX19_03828 0.31 -0.3 67,184 + MPMX19_03828 0.31 +0.8 67,185 - MPMX19_03828 0.31 -0.7 67,185 - MPMX19_03828 0.31 -1.3 67,217 + MPMX19_03828 0.34 -1.0 67,217 + MPMX19_03828 0.34 -0.4 67,217 + MPMX19_03828 0.34 +1.2 67,217 + MPMX19_03828 0.34 +0.6 67,217 + MPMX19_03828 0.34 -1.4 67,218 - MPMX19_03828 0.34 -1.1 67,218 - MPMX19_03828 0.34 -0.1 67,218 - MPMX19_03828 0.34 -1.3 67,262 + MPMX19_03828 0.37 +0.9 67,262 + MPMX19_03828 0.37 -1.1 67,263 - MPMX19_03828 0.37 +0.9 67,263 - MPMX19_03828 0.37 +0.7 67,313 + MPMX19_03828 0.41 -1.6 67,313 + MPMX19_03828 0.41 -0.3 67,313 + MPMX19_03828 0.41 +0.4 67,313 + MPMX19_03828 0.41 +0.2 67,313 + MPMX19_03828 0.41 +1.5 67,313 + MPMX19_03828 0.41 +0.9 67,313 + MPMX19_03828 0.41 -0.5 67,313 + MPMX19_03828 0.41 +0.5 67,313 + MPMX19_03828 0.41 -0.1 67,313 + MPMX19_03828 0.41 +0.2 67,313 + MPMX19_03828 0.41 -1.1 67,313 + MPMX19_03828 0.41 -0.1 67,314 - MPMX19_03828 0.41 +1.2 67,314 - MPMX19_03828 0.41 +0.3 67,314 - MPMX19_03828 0.41 +0.4 67,314 - MPMX19_03828 0.41 -0.4 67,314 - MPMX19_03828 0.41 -0.3 67,314 - MPMX19_03828 0.41 -0.9 67,314 - MPMX19_03828 0.41 +0.5 67,314 - MPMX19_03828 0.41 +0.6 67,314 - MPMX19_03828 0.41 +1.0 67,314 - MPMX19_03828 0.41 -0.3 67,314 - MPMX19_03828 0.41 -0.5 67,314 - MPMX19_03828 0.41 -0.8 67,319 + MPMX19_03828 0.41 -0.5 67,319 + MPMX19_03828 0.41 -1.1 67,319 + MPMX19_03828 0.41 +0.6 67,319 + MPMX19_03828 0.41 -0.8 67,319 + MPMX19_03828 0.41 +0.2 67,320 - MPMX19_03828 0.41 -0.0 67,320 - MPMX19_03828 0.41 +0.0 67,320 - MPMX19_03828 0.41 -1.5 67,352 + MPMX19_03828 0.44 +0.0 67,352 + MPMX19_03828 0.44 +1.2 67,352 + MPMX19_03828 0.44 +0.4 67,352 + MPMX19_03828 0.44 -0.1 67,352 + MPMX19_03828 0.44 -1.1 67,352 + MPMX19_03828 0.44 -0.4 67,353 - MPMX19_03828 0.44 +0.4 67,397 + MPMX19_03828 0.47 +0.6 67,397 + MPMX19_03828 0.47 +0.1 67,397 + MPMX19_03828 0.47 +0.5 67,397 + MPMX19_03828 0.47 +1.2 67,397 + MPMX19_03828 0.47 -1.0 67,397 + MPMX19_03828 0.47 -0.9 67,397 + MPMX19_03828 0.47 -0.8 67,397 + MPMX19_03828 0.47 +1.2 67,397 + MPMX19_03828 0.47 +0.5 67,397 + MPMX19_03828 0.47 -1.1 67,397 + MPMX19_03828 0.47 +0.2 67,397 + MPMX19_03828 0.47 -2.3 67,398 - MPMX19_03828 0.47 -0.4 67,398 - MPMX19_03828 0.47 -1.3 67,398 - MPMX19_03828 0.47 -0.8 67,398 - MPMX19_03828 0.47 -0.2 67,398 - MPMX19_03828 0.47 -1.1 67,398 - MPMX19_03828 0.47 -1.8
Or see this region's nucleotide sequence