Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03801 and MPMX19_03802 are separated by 10 nucleotides MPMX19_03802 and MPMX19_03803 overlap by 4 nucleotides MPMX19_03803 and MPMX19_03804 overlap by 4 nucleotides MPMX19_03804 and MPMX19_03805 overlap by 1 nucleotides MPMX19_03805 and MPMX19_03806 are separated by 3 nucleotides
MPMX19_03801: MPMX19_03801 - hypothetical protein, at 36,312 to 37,238
_03801
MPMX19_03802: MPMX19_03802 - hypothetical protein, at 37,249 to 37,623
_03802
MPMX19_03803: MPMX19_03803 - hypothetical protein, at 37,620 to 38,057
_03803
MPMX19_03804: MPMX19_03804 - hypothetical protein, at 38,054 to 38,587
_03804
MPMX19_03805: MPMX19_03805 - hypothetical protein, at 38,587 to 38,997
_03805
MPMX19_03806: MPMX19_03806 - hypothetical protein, at 39,001 to 39,180
_03806
Position (kb) 37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 36.681 kb on + strand, within MPMX19_03801 at 36.681 kb on + strand, within MPMX19_03801 at 36.681 kb on + strand, within MPMX19_03801 at 36.717 kb on + strand, within MPMX19_03801 at 36.717 kb on + strand, within MPMX19_03801 at 36.717 kb on + strand, within MPMX19_03801 at 36.717 kb on + strand, within MPMX19_03801 at 36.718 kb on - strand, within MPMX19_03801 at 36.718 kb on - strand, within MPMX19_03801 at 36.825 kb on - strand, within MPMX19_03801 at 36.912 kb on + strand, within MPMX19_03801 at 36.912 kb on + strand, within MPMX19_03801 at 36.912 kb on + strand, within MPMX19_03801 at 36.912 kb on + strand, within MPMX19_03801 at 36.912 kb on + strand, within MPMX19_03801 at 36.912 kb on + strand, within MPMX19_03801 at 36.912 kb on + strand, within MPMX19_03801 at 36.912 kb on + strand, within MPMX19_03801 at 36.913 kb on - strand, within MPMX19_03801 at 36.913 kb on - strand, within MPMX19_03801 at 36.913 kb on - strand, within MPMX19_03801 at 36.913 kb on - strand, within MPMX19_03801 at 36.913 kb on - strand, within MPMX19_03801 at 36.913 kb on - strand, within MPMX19_03801 at 36.913 kb on - strand, within MPMX19_03801 at 36.913 kb on - strand, within MPMX19_03801 at 36.993 kb on + strand, within MPMX19_03801 at 36.993 kb on + strand, within MPMX19_03801 at 36.994 kb on - strand, within MPMX19_03801 at 36.994 kb on - strand, within MPMX19_03801 at 37.021 kb on + strand, within MPMX19_03801 at 37.021 kb on + strand, within MPMX19_03801 at 37.021 kb on + strand, within MPMX19_03801 at 37.021 kb on + strand, within MPMX19_03801 at 37.021 kb on + strand, within MPMX19_03801 at 37.021 kb on + strand, within MPMX19_03801 at 37.021 kb on + strand, within MPMX19_03801 at 37.021 kb on + strand, within MPMX19_03801 at 37.022 kb on - strand, within MPMX19_03801 at 37.022 kb on - strand, within MPMX19_03801 at 37.022 kb on - strand, within MPMX19_03801 at 37.022 kb on - strand, within MPMX19_03801 at 37.047 kb on + strand, within MPMX19_03801 at 37.047 kb on + strand, within MPMX19_03801 at 37.047 kb on + strand, within MPMX19_03801 at 37.047 kb on + strand, within MPMX19_03801 at 37.047 kb on + strand, within MPMX19_03801 at 37.047 kb on + strand, within MPMX19_03801 at 37.048 kb on - strand, within MPMX19_03801 at 37.048 kb on - strand, within MPMX19_03801 at 37.086 kb on + strand, within MPMX19_03801 at 37.086 kb on + strand, within MPMX19_03801 at 37.086 kb on + strand, within MPMX19_03801 at 37.086 kb on + strand, within MPMX19_03801 at 37.086 kb on + strand, within MPMX19_03801 at 37.086 kb on + strand, within MPMX19_03801 at 37.087 kb on - strand, within MPMX19_03801 at 37.092 kb on + strand, within MPMX19_03801 at 37.092 kb on + strand, within MPMX19_03801 at 37.092 kb on + strand, within MPMX19_03801 at 37.093 kb on - strand, within MPMX19_03801 at 37.093 kb on - strand, within MPMX19_03801 at 37.093 kb on - strand, within MPMX19_03801 at 37.093 kb on - strand, within MPMX19_03801 at 37.093 kb on - strand, within MPMX19_03801 at 37.093 kb on - strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.098 kb on + strand, within MPMX19_03801 at 37.099 kb on - strand, within MPMX19_03801 at 37.099 kb on - strand, within MPMX19_03801 at 37.099 kb on - strand, within MPMX19_03801 at 37.099 kb on - strand, within MPMX19_03801 at 37.099 kb on - strand, within MPMX19_03801 at 37.099 kb on - strand, within MPMX19_03801 at 37.099 kb on - strand, within MPMX19_03801 at 37.099 kb on - strand, within MPMX19_03801 at 37.134 kb on + strand, within MPMX19_03801 at 37.134 kb on + strand, within MPMX19_03801 at 37.134 kb on + strand, within MPMX19_03801 at 37.134 kb on + strand, within MPMX19_03801 at 37.134 kb on + strand, within MPMX19_03801 at 37.134 kb on + strand, within MPMX19_03801 at 37.134 kb on + strand, within MPMX19_03801 at 37.135 kb on - strand, within MPMX19_03801 at 37.135 kb on - strand, within MPMX19_03801 at 37.135 kb on - strand, within MPMX19_03801 at 37.135 kb on - strand, within MPMX19_03801 at 37.135 kb on - strand, within MPMX19_03801 at 37.135 kb on - strand, within MPMX19_03801 at 37.135 kb on - strand, within MPMX19_03801 at 37.135 kb on - strand, within MPMX19_03801 at 37.137 kb on + strand, within MPMX19_03801 at 37.137 kb on + strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.138 kb on - strand, within MPMX19_03801 at 37.164 kb on + strand at 37.236 kb on + strand at 37.236 kb on + strand at 37.236 kb on + strand at 37.236 kb on + strand at 37.236 kb on + strand at 37.236 kb on + strand at 37.237 kb on - strand at 37.237 kb on - strand at 37.237 kb on - strand at 37.237 kb on - strand at 37.237 kb on - strand at 37.237 kb on - strand at 37.237 kb on - strand at 37.626 kb on + strand at 37.626 kb on + strand at 37.626 kb on + strand at 37.626 kb on + strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.627 kb on - strand at 37.771 kb on - strand, within MPMX19_03803 at 37.771 kb on - strand, within MPMX19_03803 at 37.857 kb on + strand, within MPMX19_03803 at 37.857 kb on + strand, within MPMX19_03803 at 37.858 kb on - strand, within MPMX19_03803 at 37.858 kb on - strand, within MPMX19_03803 at 37.858 kb on - strand, within MPMX19_03803 at 37.900 kb on - strand, within MPMX19_03803 at 37.900 kb on - strand, within MPMX19_03803 at 38.163 kb on + strand, within MPMX19_03804 at 38.163 kb on + strand, within MPMX19_03804 at 38.163 kb on + strand, within MPMX19_03804 at 38.163 kb on + strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.164 kb on - strand, within MPMX19_03804 at 38.266 kb on + strand, within MPMX19_03804 at 38.266 kb on + strand, within MPMX19_03804 at 38.327 kb on + strand, within MPMX19_03804 at 38.327 kb on + strand, within MPMX19_03804 at 38.328 kb on - strand, within MPMX19_03804 at 38.328 kb on - strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.429 kb on + strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.430 kb on - strand, within MPMX19_03804 at 38.912 kb on - strand, within MPMX19_03805 at 38.912 kb on - strand, within MPMX19_03805
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 36,681 + MPMX19_03801 0.40 -1.6 36,681 + MPMX19_03801 0.40 -1.3 36,681 + MPMX19_03801 0.40 -0.3 36,717 + MPMX19_03801 0.44 +1.2 36,717 + MPMX19_03801 0.44 +0.0 36,717 + MPMX19_03801 0.44 +0.0 36,717 + MPMX19_03801 0.44 +1.5 36,718 - MPMX19_03801 0.44 -0.3 36,718 - MPMX19_03801 0.44 +1.2 36,825 - MPMX19_03801 0.55 -0.7 36,912 + MPMX19_03801 0.65 -0.1 36,912 + MPMX19_03801 0.65 -0.1 36,912 + MPMX19_03801 0.65 -2.0 36,912 + MPMX19_03801 0.65 -1.7 36,912 + MPMX19_03801 0.65 -0.3 36,912 + MPMX19_03801 0.65 -0.6 36,912 + MPMX19_03801 0.65 -0.6 36,912 + MPMX19_03801 0.65 +0.6 36,913 - MPMX19_03801 0.65 -0.0 36,913 - MPMX19_03801 0.65 -0.4 36,913 - MPMX19_03801 0.65 -0.1 36,913 - MPMX19_03801 0.65 +0.6 36,913 - MPMX19_03801 0.65 -1.3 36,913 - MPMX19_03801 0.65 +0.5 36,913 - MPMX19_03801 0.65 +1.6 36,913 - MPMX19_03801 0.65 -0.6 36,993 + MPMX19_03801 0.73 +0.2 36,993 + MPMX19_03801 0.73 -0.8 36,994 - MPMX19_03801 0.74 -0.6 36,994 - MPMX19_03801 0.74 +1.2 37,021 + MPMX19_03801 0.76 -0.9 37,021 + MPMX19_03801 0.76 +1.2 37,021 + MPMX19_03801 0.76 -2.1 37,021 + MPMX19_03801 0.76 +0.2 37,021 + MPMX19_03801 0.76 -0.6 37,021 + MPMX19_03801 0.76 -1.8 37,021 + MPMX19_03801 0.76 -1.5 37,021 + MPMX19_03801 0.76 -0.8 37,022 - MPMX19_03801 0.77 -0.1 37,022 - MPMX19_03801 0.77 +1.1 37,022 - MPMX19_03801 0.77 -0.4 37,022 - MPMX19_03801 0.77 -0.5 37,047 + MPMX19_03801 0.79 -0.4 37,047 + MPMX19_03801 0.79 +2.8 37,047 + MPMX19_03801 0.79 +0.4 37,047 + MPMX19_03801 0.79 -0.4 37,047 + MPMX19_03801 0.79 +1.9 37,047 + MPMX19_03801 0.79 +0.0 37,048 - MPMX19_03801 0.79 -2.6 37,048 - MPMX19_03801 0.79 -0.9 37,086 + MPMX19_03801 0.83 -0.5 37,086 + MPMX19_03801 0.83 -0.1 37,086 + MPMX19_03801 0.83 +0.5 37,086 + MPMX19_03801 0.83 -1.3 37,086 + MPMX19_03801 0.83 -0.8 37,086 + MPMX19_03801 0.83 +1.2 37,087 - MPMX19_03801 0.84 -0.6 37,092 + MPMX19_03801 0.84 +1.4 37,092 + MPMX19_03801 0.84 +0.6 37,092 + MPMX19_03801 0.84 -0.4 37,093 - MPMX19_03801 0.84 +0.6 37,093 - MPMX19_03801 0.84 +0.1 37,093 - MPMX19_03801 0.84 +0.7 37,093 - MPMX19_03801 0.84 -1.6 37,093 - MPMX19_03801 0.84 -2.1 37,093 - MPMX19_03801 0.84 -0.2 37,098 + MPMX19_03801 0.85 -0.7 37,098 + MPMX19_03801 0.85 -0.2 37,098 + MPMX19_03801 0.85 -0.1 37,098 + MPMX19_03801 0.85 +1.2 37,098 + MPMX19_03801 0.85 -0.3 37,098 + MPMX19_03801 0.85 -0.8 37,098 + MPMX19_03801 0.85 -1.5 37,098 + MPMX19_03801 0.85 +0.1 37,098 + MPMX19_03801 0.85 +0.4 37,098 + MPMX19_03801 0.85 +0.0 37,098 + MPMX19_03801 0.85 -2.8 37,098 + MPMX19_03801 0.85 +0.7 37,099 - MPMX19_03801 0.85 -0.5 37,099 - MPMX19_03801 0.85 +0.0 37,099 - MPMX19_03801 0.85 +1.4 37,099 - MPMX19_03801 0.85 -1.6 37,099 - MPMX19_03801 0.85 -1.4 37,099 - MPMX19_03801 0.85 +0.2 37,099 - MPMX19_03801 0.85 +0.6 37,099 - MPMX19_03801 0.85 -1.0 37,134 + MPMX19_03801 0.89 -0.7 37,134 + MPMX19_03801 0.89 -0.8 37,134 + MPMX19_03801 0.89 -1.1 37,134 + MPMX19_03801 0.89 -1.3 37,134 + MPMX19_03801 0.89 -1.5 37,134 + MPMX19_03801 0.89 -0.3 37,134 + MPMX19_03801 0.89 -0.8 37,135 - MPMX19_03801 0.89 +1.0 37,135 - MPMX19_03801 0.89 +1.2 37,135 - MPMX19_03801 0.89 -0.1 37,135 - MPMX19_03801 0.89 -0.3 37,135 - MPMX19_03801 0.89 +0.9 37,135 - MPMX19_03801 0.89 +0.4 37,135 - MPMX19_03801 0.89 +0.3 37,135 - MPMX19_03801 0.89 +0.2 37,137 + MPMX19_03801 0.89 +0.5 37,137 + MPMX19_03801 0.89 -0.5 37,138 - MPMX19_03801 0.89 -0.6 37,138 - MPMX19_03801 0.89 -0.1 37,138 - MPMX19_03801 0.89 -1.0 37,138 - MPMX19_03801 0.89 -1.7 37,138 - MPMX19_03801 0.89 -2.3 37,138 - MPMX19_03801 0.89 +0.6 37,138 - MPMX19_03801 0.89 +1.9 37,138 - MPMX19_03801 0.89 +2.0 37,138 - MPMX19_03801 0.89 -1.9 37,164 + +1.2 37,236 + +0.1 37,236 + +0.1 37,236 + +0.7 37,236 + +0.0 37,236 + -0.1 37,236 + -0.5 37,237 - -0.0 37,237 - -0.8 37,237 - +0.5 37,237 - +0.4 37,237 - -0.3 37,237 - -0.2 37,237 - -1.4 37,626 + -1.1 37,626 + +0.4 37,626 + -0.0 37,626 + -0.7 37,627 - -0.1 37,627 - -0.6 37,627 - -0.5 37,627 - -0.3 37,627 - +1.0 37,627 - -0.5 37,627 - +0.0 37,627 - +0.5 37,627 - -1.1 37,627 - -2.3 37,771 - MPMX19_03803 0.34 -0.3 37,771 - MPMX19_03803 0.34 -1.3 37,857 + MPMX19_03803 0.54 -1.3 37,857 + MPMX19_03803 0.54 -0.7 37,858 - MPMX19_03803 0.54 -1.7 37,858 - MPMX19_03803 0.54 +0.4 37,858 - MPMX19_03803 0.54 -0.9 37,900 - MPMX19_03803 0.64 -0.5 37,900 - MPMX19_03803 0.64 -0.1 38,163 + MPMX19_03804 0.20 -0.8 38,163 + MPMX19_03804 0.20 +0.3 38,163 + MPMX19_03804 0.20 -0.4 38,163 + MPMX19_03804 0.20 -1.0 38,164 - MPMX19_03804 0.21 +0.5 38,164 - MPMX19_03804 0.21 +0.0 38,164 - MPMX19_03804 0.21 -1.0 38,164 - MPMX19_03804 0.21 -1.5 38,164 - MPMX19_03804 0.21 -1.7 38,164 - MPMX19_03804 0.21 -1.7 38,164 - MPMX19_03804 0.21 -0.3 38,164 - MPMX19_03804 0.21 +1.2 38,164 - MPMX19_03804 0.21 -0.3 38,164 - MPMX19_03804 0.21 -1.0 38,164 - MPMX19_03804 0.21 -0.1 38,266 + MPMX19_03804 0.40 -1.2 38,266 + MPMX19_03804 0.40 +0.9 38,327 + MPMX19_03804 0.51 -2.0 38,327 + MPMX19_03804 0.51 -1.0 38,328 - MPMX19_03804 0.51 +0.2 38,328 - MPMX19_03804 0.51 +1.2 38,429 + MPMX19_03804 0.70 -1.5 38,429 + MPMX19_03804 0.70 +0.6 38,429 + MPMX19_03804 0.70 -0.1 38,429 + MPMX19_03804 0.70 -1.1 38,429 + MPMX19_03804 0.70 -0.6 38,429 + MPMX19_03804 0.70 +0.1 38,429 + MPMX19_03804 0.70 -1.5 38,429 + MPMX19_03804 0.70 -0.1 38,429 + MPMX19_03804 0.70 -0.4 38,429 + MPMX19_03804 0.70 +0.6 38,429 + MPMX19_03804 0.70 -1.2 38,429 + MPMX19_03804 0.70 -1.0 38,429 + MPMX19_03804 0.70 +1.0 38,429 + MPMX19_03804 0.70 +0.6 38,429 + MPMX19_03804 0.70 +0.5 38,430 - MPMX19_03804 0.70 -0.4 38,430 - MPMX19_03804 0.70 +0.6 38,430 - MPMX19_03804 0.70 -1.0 38,430 - MPMX19_03804 0.70 -0.6 38,430 - MPMX19_03804 0.70 +0.4 38,430 - MPMX19_03804 0.70 -0.6 38,430 - MPMX19_03804 0.70 -1.1 38,430 - MPMX19_03804 0.70 +0.4 38,430 - MPMX19_03804 0.70 -0.4 38,430 - MPMX19_03804 0.70 +0.3 38,430 - MPMX19_03804 0.70 -0.4 38,430 - MPMX19_03804 0.70 +0.7 38,430 - MPMX19_03804 0.70 -1.8 38,430 - MPMX19_03804 0.70 -0.4 38,430 - MPMX19_03804 0.70 -2.2 38,430 - MPMX19_03804 0.70 +0.0 38,912 - MPMX19_03805 0.79 -0.4 38,912 - MPMX19_03805 0.79 +2.2
Or see this region's nucleotide sequence