Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03758

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03756 and MPMX19_03757 are separated by 201 nucleotidesMPMX19_03757 and MPMX19_03758 are separated by 14 nucleotidesMPMX19_03758 and MPMX19_03759 are separated by 21 nucleotides MPMX19_03756: MPMX19_03756 - hypothetical protein, at 1,201,373 to 1,201,672 _03756 MPMX19_03757: MPMX19_03757 - D-ribose pyranase, at 1,201,874 to 1,202,293 _03757 MPMX19_03758: MPMX19_03758 - Ribose import ATP-binding protein RbsA, at 1,202,308 to 1,203,804 _03758 MPMX19_03759: MPMX19_03759 - Ribose import permease protein RbsC, at 1,203,826 to 1,204,767 _03759 Position (kb) 1202 1203 1204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1201.469 kb on + strand, within MPMX19_03756at 1201.469 kb on + strand, within MPMX19_03756at 1201.470 kb on - strand, within MPMX19_03756at 1201.470 kb on - strand, within MPMX19_03756at 1201.508 kb on + strand, within MPMX19_03756at 1201.508 kb on + strand, within MPMX19_03756at 1201.661 kb on + strandat 1201.661 kb on + strandat 1201.661 kb on + strandat 1201.662 kb on - strandat 1201.662 kb on - strandat 1201.662 kb on - strandat 1201.662 kb on - strandat 1201.662 kb on - strandat 1201.708 kb on + strandat 1201.708 kb on + strandat 1201.708 kb on + strandat 1201.709 kb on - strandat 1201.709 kb on - strandat 1201.709 kb on - strandat 1201.755 kb on - strandat 1201.755 kb on - strandat 1201.755 kb on - strandat 1201.835 kb on + strandat 1201.836 kb on - strandat 1201.836 kb on - strandat 1201.836 kb on - strandat 1201.934 kb on - strand, within MPMX19_03757at 1202.200 kb on + strand, within MPMX19_03757at 1202.200 kb on + strand, within MPMX19_03757at 1202.200 kb on + strand, within MPMX19_03757at 1202.200 kb on + strand, within MPMX19_03757at 1202.200 kb on + strand, within MPMX19_03757at 1202.201 kb on - strand, within MPMX19_03757at 1202.201 kb on - strand, within MPMX19_03757at 1202.201 kb on - strand, within MPMX19_03757at 1202.201 kb on - strand, within MPMX19_03757at 1202.274 kb on - strandat 1202.283 kb on + strandat 1202.283 kb on + strandat 1202.283 kb on + strandat 1202.284 kb on - strandat 1202.284 kb on - strandat 1202.284 kb on - strandat 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1203.059 kb on - strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.065 kb on - strand, within MPMX19_03758at 1203.065 kb on - strand, within MPMX19_03758at 1203.065 kb on - strand, within MPMX19_03758at 1203.065 kb on - strand, within MPMX19_03758at 1203.313 kb on + strand, within MPMX19_03758at 1203.313 kb on + strand, within MPMX19_03758at 1203.313 kb on + strand, within MPMX19_03758at 1203.313 kb on + strand, within MPMX19_03758at 1203.313 kb on + strand, within MPMX19_03758at 1203.313 kb on + strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.625 kb on + strand, within MPMX19_03758at 1203.625 kb on + strand, within MPMX19_03758at 1203.626 kb on - strand, within MPMX19_03758at 1203.626 kb on - strand, within MPMX19_03758at 1203.626 kb on - strand, within MPMX19_03758at 1203.626 kb on - strand, within MPMX19_03758at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1204.300 kb on + strand, within MPMX19_03759at 1204.301 kb on - strand, within MPMX19_03759at 1204.390 kb on + strand, within MPMX19_03759at 1204.390 kb on + strand, within MPMX19_03759at 1204.391 kb on - strand, within MPMX19_03759at 1204.391 kb on - strand, within MPMX19_03759at 1204.391 kb on - strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.468 kb on + strand, within MPMX19_03759at 1204.468 kb on + strand, within MPMX19_03759at 1204.468 kb on + strand, within MPMX19_03759at 1204.468 kb on + strand, within MPMX19_03759at 1204.468 kb on + strand, within MPMX19_03759at 1204.468 kb on + strand, within MPMX19_03759at 1204.468 kb on + strand, within MPMX19_03759at 1204.468 kb on + strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.555 kb on + strand, within MPMX19_03759at 1204.555 kb on + strand, within MPMX19_03759at 1204.555 kb on + strand, within MPMX19_03759at 1204.696 kb on + strandat 1204.696 kb on + strandat 1204.696 kb on + strandat 1204.696 kb on + strandat 1204.696 kb on + strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.699 kb on + strandat 1204.699 kb on + strandat 1204.699 kb on + strandat 1204.700 kb on - strandat 1204.700 kb on - strandat 1204.700 kb on - strandat 1204.700 kb on - strandat 1204.766 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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1,201,469 + MPMX19_03756 0.32 +0.5
1,201,469 + MPMX19_03756 0.32 +0.0
1,201,470 - MPMX19_03756 0.32 +0.0
1,201,470 - MPMX19_03756 0.32 +1.0
1,201,508 + MPMX19_03756 0.45 -1.7
1,201,508 + MPMX19_03756 0.45 +1.8
1,201,661 + +0.5
1,201,661 + +1.2
1,201,661 + +0.2
1,201,662 - -0.4
1,201,662 - -1.0
1,201,662 - -0.7
1,201,662 - -1.7
1,201,662 - -0.5
1,201,708 + +0.3
1,201,708 + -0.4
1,201,708 + -1.8
1,201,709 - +0.3
1,201,709 - -0.5
1,201,709 - +0.5
1,201,755 - +0.2
1,201,755 - -0.7
1,201,755 - +0.0
1,201,835 + +0.0
1,201,836 - -1.5
1,201,836 - -0.5
1,201,836 - -0.5
1,201,934 - MPMX19_03757 0.14 -0.8
1,202,200 + MPMX19_03757 0.78 +0.3
1,202,200 + MPMX19_03757 0.78 -1.9
1,202,200 + MPMX19_03757 0.78 +1.5
1,202,200 + MPMX19_03757 0.78 +1.5
1,202,200 + MPMX19_03757 0.78 -1.9
1,202,201 - MPMX19_03757 0.78 -0.1
1,202,201 - MPMX19_03757 0.78 -0.8
1,202,201 - MPMX19_03757 0.78 +1.6
1,202,201 - MPMX19_03757 0.78 -0.8
1,202,274 - +0.6
1,202,283 + +0.4
1,202,283 + -0.4
1,202,283 + -3.0
1,202,284 - -0.3
1,202,284 - -1.0
1,202,284 - -0.3
1,202,908 + MPMX19_03758 0.40 -0.5
1,202,908 + MPMX19_03758 0.40 -0.3
1,202,908 + MPMX19_03758 0.40 -0.3
1,202,908 + MPMX19_03758 0.40 -1.2
1,202,908 + MPMX19_03758 0.40 +1.6
1,202,908 + MPMX19_03758 0.40 -1.2
1,202,908 + MPMX19_03758 0.40 -0.4
1,202,908 + MPMX19_03758 0.40 -0.3
1,202,908 + MPMX19_03758 0.40 -1.1
1,202,909 - MPMX19_03758 0.40 +0.4
1,202,909 - MPMX19_03758 0.40 -1.5
1,202,909 - MPMX19_03758 0.40 -1.0
1,202,909 - MPMX19_03758 0.40 +0.3
1,202,909 - MPMX19_03758 0.40 +0.0
1,202,909 - MPMX19_03758 0.40 +0.2
1,202,909 - MPMX19_03758 0.40 -0.3
1,202,909 - MPMX19_03758 0.40 +0.2
1,202,909 - MPMX19_03758 0.40 -1.5
1,202,909 - MPMX19_03758 0.40 -0.7
1,202,909 - MPMX19_03758 0.40 -0.5
1,202,909 - MPMX19_03758 0.40 -1.5
1,202,909 - MPMX19_03758 0.40 -1.8
1,203,059 - MPMX19_03758 0.50 -1.1
1,203,064 + MPMX19_03758 0.51 -0.3
1,203,064 + MPMX19_03758 0.51 -0.5
1,203,064 + MPMX19_03758 0.51 -0.8
1,203,064 + MPMX19_03758 0.51 +1.2
1,203,064 + MPMX19_03758 0.51 -0.8
1,203,064 + MPMX19_03758 0.51 -0.8
1,203,064 + MPMX19_03758 0.51 -1.1
1,203,064 + MPMX19_03758 0.51 -0.3
1,203,064 + MPMX19_03758 0.51 +0.2
1,203,065 - MPMX19_03758 0.51 -0.1
1,203,065 - MPMX19_03758 0.51 -1.3
1,203,065 - MPMX19_03758 0.51 +0.1
1,203,065 - MPMX19_03758 0.51 -1.8
1,203,313 + MPMX19_03758 0.67 +0.2
1,203,313 + MPMX19_03758 0.67 +0.5
1,203,313 + MPMX19_03758 0.67 -0.2
1,203,313 + MPMX19_03758 0.67 -1.5
1,203,313 + MPMX19_03758 0.67 -2.7
1,203,313 + MPMX19_03758 0.67 -1.1
1,203,314 - MPMX19_03758 0.67 -1.3
1,203,314 - MPMX19_03758 0.67 -0.4
1,203,314 - MPMX19_03758 0.67 -1.8
1,203,314 - MPMX19_03758 0.67 -1.3
1,203,314 - MPMX19_03758 0.67 -1.5
1,203,314 - MPMX19_03758 0.67 -1.7
1,203,314 - MPMX19_03758 0.67 -1.1
1,203,314 - MPMX19_03758 0.67 +0.5
1,203,314 - MPMX19_03758 0.67 +1.2
1,203,314 - MPMX19_03758 0.67 -0.3
1,203,625 + MPMX19_03758 0.88 -0.4
1,203,625 + MPMX19_03758 0.88 -0.3
1,203,626 - MPMX19_03758 0.88 -0.5
1,203,626 - MPMX19_03758 0.88 +1.2
1,203,626 - MPMX19_03758 0.88 +0.6
1,203,626 - MPMX19_03758 0.88 -0.5
1,203,991 + MPMX19_03759 0.18 +0.2
1,203,991 + MPMX19_03759 0.18 +1.0
1,203,991 + MPMX19_03759 0.18 -1.2
1,203,991 + MPMX19_03759 0.18 +0.5
1,203,991 + MPMX19_03759 0.18 +0.2
1,203,991 + MPMX19_03759 0.18 -1.3
1,203,991 + MPMX19_03759 0.18 -0.4
1,203,991 + MPMX19_03759 0.18 -0.5
1,203,991 + MPMX19_03759 0.18 +0.0
1,203,991 + MPMX19_03759 0.18 -0.8
1,203,991 + MPMX19_03759 0.18 -0.1
1,203,991 + MPMX19_03759 0.18 -2.8
1,203,991 + MPMX19_03759 0.18 -1.3
1,203,991 + MPMX19_03759 0.18 -1.1
1,203,991 + MPMX19_03759 0.18 +0.1
1,203,991 + MPMX19_03759 0.18 +0.0
1,203,991 + MPMX19_03759 0.18 -1.1
1,203,992 - MPMX19_03759 0.18 -1.0
1,203,992 - MPMX19_03759 0.18 -1.1
1,203,992 - MPMX19_03759 0.18 -1.0
1,203,992 - MPMX19_03759 0.18 -1.4
1,203,992 - MPMX19_03759 0.18 -1.9
1,203,992 - MPMX19_03759 0.18 -1.0
1,203,992 - MPMX19_03759 0.18 -0.9
1,203,992 - MPMX19_03759 0.18 -0.5
1,203,992 - MPMX19_03759 0.18 -1.8
1,203,992 - MPMX19_03759 0.18 -0.5
1,203,992 - MPMX19_03759 0.18 -2.4
1,203,992 - MPMX19_03759 0.18 +1.0
1,203,992 - MPMX19_03759 0.18 -1.0
1,203,992 - MPMX19_03759 0.18 -0.3
1,203,992 - MPMX19_03759 0.18 +0.7
1,203,992 - MPMX19_03759 0.18 -1.8
1,203,992 - MPMX19_03759 0.18 -0.1
1,203,992 - MPMX19_03759 0.18 -1.7
1,203,992 - MPMX19_03759 0.18 -1.5
1,204,300 + MPMX19_03759 0.50 +0.9
1,204,301 - MPMX19_03759 0.50 -0.8
1,204,390 + MPMX19_03759 0.60 +0.4
1,204,390 + MPMX19_03759 0.60 -1.1
1,204,391 - MPMX19_03759 0.60 -0.8
1,204,391 - MPMX19_03759 0.60 -0.8
1,204,391 - MPMX19_03759 0.60 +2.0
1,204,396 + MPMX19_03759 0.61 -1.2
1,204,396 + MPMX19_03759 0.61 -0.6
1,204,396 + MPMX19_03759 0.61 +0.0
1,204,396 + MPMX19_03759 0.61 +0.0
1,204,396 + MPMX19_03759 0.61 -1.8
1,204,396 + MPMX19_03759 0.61 -0.1
1,204,396 + MPMX19_03759 0.61 +0.2
1,204,396 + MPMX19_03759 0.61 +0.5
1,204,396 + MPMX19_03759 0.61 +0.5
1,204,396 + MPMX19_03759 0.61 -0.5
1,204,396 + MPMX19_03759 0.61 -0.7
1,204,396 + MPMX19_03759 0.61 -0.8
1,204,396 + MPMX19_03759 0.61 +1.2
1,204,396 + MPMX19_03759 0.61 -0.2
1,204,396 + MPMX19_03759 0.61 -0.1
1,204,397 - MPMX19_03759 0.61 +0.3
1,204,397 - MPMX19_03759 0.61 -0.4
1,204,397 - MPMX19_03759 0.61 -1.0
1,204,397 - MPMX19_03759 0.61 -1.0
1,204,397 - MPMX19_03759 0.61 +1.5
1,204,397 - MPMX19_03759 0.61 -0.1
1,204,397 - MPMX19_03759 0.61 -2.3
1,204,397 - MPMX19_03759 0.61 +0.5
1,204,397 - MPMX19_03759 0.61 -1.7
1,204,397 - MPMX19_03759 0.61 -1.4
1,204,397 - MPMX19_03759 0.61 -0.1
1,204,468 + MPMX19_03759 0.68 -0.0
1,204,468 + MPMX19_03759 0.68 +1.1
1,204,468 + MPMX19_03759 0.68 -0.4
1,204,468 + MPMX19_03759 0.68 -0.8
1,204,468 + MPMX19_03759 0.68 -0.7
1,204,468 + MPMX19_03759 0.68 +1.9
1,204,468 + MPMX19_03759 0.68 -1.3
1,204,468 + MPMX19_03759 0.68 -0.3
1,204,469 - MPMX19_03759 0.68 +0.5
1,204,469 - MPMX19_03759 0.68 -0.6
1,204,469 - MPMX19_03759 0.68 -0.8
1,204,469 - MPMX19_03759 0.68 -1.3
1,204,469 - MPMX19_03759 0.68 +0.1
1,204,469 - MPMX19_03759 0.68 -1.3
1,204,469 - MPMX19_03759 0.68 -0.7
1,204,469 - MPMX19_03759 0.68 +0.0
1,204,469 - MPMX19_03759 0.68 -0.5
1,204,469 - MPMX19_03759 0.68 +0.3
1,204,555 + MPMX19_03759 0.77 +0.6
1,204,555 + MPMX19_03759 0.77 -0.4
1,204,555 + MPMX19_03759 0.77 +0.0
1,204,696 + +1.2
1,204,696 + -1.3
1,204,696 + -2.0
1,204,696 + +1.3
1,204,696 + -0.8
1,204,697 - -1.2
1,204,697 - -1.0
1,204,697 - -1.4
1,204,697 - -1.0
1,204,697 - -0.3
1,204,697 - -0.4
1,204,697 - +1.5
1,204,697 - -0.3
1,204,697 - -0.6
1,204,697 - -0.9
1,204,697 - -0.0
1,204,697 - -1.6
1,204,699 + -0.3
1,204,699 + +0.5
1,204,699 + -0.3
1,204,700 - -0.1
1,204,700 - +0.3
1,204,700 - -0.3
1,204,700 - -1.1
1,204,766 - -1.7

Or see this region's nucleotide sequence