Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03742

Experiment: NL-CCM, start OD=0.3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM, start OD=0.3
1,183,585	-		MPMX19_03740	0.74	+1.0
1,183,585	-		MPMX19_03740	0.74	-0.8
1,183,593	+		MPMX19_03740	0.75	+0.4
1,183,593	+		MPMX19_03740	0.75	+1.6
1,183,593	+		MPMX19_03740	0.75	-0.1
1,183,593	+		MPMX19_03740	0.75	-0.6
1,183,593	+		MPMX19_03740	0.75	-0.6
1,183,593	+		MPMX19_03740	0.75	-1.3
1,183,593	+		MPMX19_03740	0.75	-1.0
1,183,593	+		MPMX19_03740	0.75	-0.6
1,183,593	+		MPMX19_03740	0.75	-0.8
1,183,593	+		MPMX19_03740	0.75	-1.1
1,183,593	+		MPMX19_03740	0.75	+0.5
1,183,593	+		MPMX19_03740	0.75	-0.1
1,183,593	+		MPMX19_03740	0.75	-0.3
1,183,594	-		MPMX19_03740	0.75	+0.2
1,183,594	-		MPMX19_03740	0.75	-1.3
1,183,594	-		MPMX19_03740	0.75	-1.5
1,183,594	-		MPMX19_03740	0.75	+1.0
1,183,594	-		MPMX19_03740	0.75	-0.5
1,183,594	-		MPMX19_03740	0.75	-1.3
1,183,722	+		MPMX19_03740	0.83	+0.5
1,183,722	+		MPMX19_03740	0.83	-1.3
1,183,722	+		MPMX19_03740	0.83	-0.5
1,183,722	+		MPMX19_03740	0.83	-0.4
1,183,722	+		MPMX19_03740	0.83	-2.3
1,183,722	+		MPMX19_03740	0.83	-0.1
1,183,722	+		MPMX19_03740	0.83	-1.0
1,183,722	+		MPMX19_03740	0.83	-0.9
1,183,723	-		MPMX19_03740	0.83	-1.8
1,183,723	-		MPMX19_03740	0.83	+0.4
1,183,723	-		MPMX19_03740	0.83	-1.0
1,183,723	-		MPMX19_03740	0.83	-0.9
1,183,723	-		MPMX19_03740	0.83	+0.4
1,183,723	-		MPMX19_03740	0.83	+2.0
1,183,723	-		MPMX19_03740	0.83	+0.5
1,183,723	-		MPMX19_03740	0.83	+0.9
1,183,723	-		MPMX19_03740	0.83	+0.3
1,183,723	-		MPMX19_03740	0.83	-1.8
1,183,723	-		MPMX19_03740	0.83	-0.1
1,183,723	-		MPMX19_03740	0.83	-1.5
1,183,723	-		MPMX19_03740	0.83	+0.7
1,183,723	-		MPMX19_03740	0.83	+0.2
1,183,859	+				-0.1
1,183,860	-				-1.3
1,184,213	+		MPMX19_03741	0.70	-1.3
1,184,213	+		MPMX19_03741	0.70	-0.3
1,184,213	+		MPMX19_03741	0.70	-0.1
1,184,214	-		MPMX19_03741	0.70	-0.7
1,184,214	-		MPMX19_03741	0.70	+0.0
1,184,214	-		MPMX19_03741	0.70	-0.4
1,184,501	+				+1.5
1,184,501	+				-1.4
1,184,502	-				+0.5
1,184,502	-				+0.5
1,184,686	+		MPMX19_03742	0.18	-0.5
1,184,687	-		MPMX19_03742	0.18	+0.4
1,184,687	-		MPMX19_03742	0.18	+1.5
1,184,712	+		MPMX19_03742	0.23	-1.1
1,184,712	+		MPMX19_03742	0.23	-0.3
1,184,712	+		MPMX19_03742	0.23	+0.2
1,184,712	+		MPMX19_03742	0.23	+0.0
1,184,712	+		MPMX19_03742	0.23	-0.5
1,184,712	+		MPMX19_03742	0.23	-0.9
1,184,712	+		MPMX19_03742	0.23	-0.4
1,184,712	+		MPMX19_03742	0.23	+0.5
1,184,712	+		MPMX19_03742	0.23	-0.7
1,184,713	-		MPMX19_03742	0.23	+0.8
1,184,713	-		MPMX19_03742	0.23	+0.1
1,184,713	-		MPMX19_03742	0.23	-0.8
1,184,713	-		MPMX19_03742	0.23	+0.0
1,184,713	-		MPMX19_03742	0.23	-0.5
1,184,713	-		MPMX19_03742	0.23	+1.3
1,184,713	-		MPMX19_03742	0.23	+0.0
1,184,713	-		MPMX19_03742	0.23	-1.2
1,184,714	+		MPMX19_03742	0.23	-1.7
1,184,715	-		MPMX19_03742	0.23	-1.3
1,184,775	+		MPMX19_03742	0.33	-1.8
1,184,775	+		MPMX19_03742	0.33	-1.2
1,184,776	-		MPMX19_03742	0.33	-0.3
1,184,776	-		MPMX19_03742	0.33	+0.5
1,184,776	-		MPMX19_03742	0.33	-0.8
1,184,930	+		MPMX19_03742	0.59	+1.5
1,184,930	+		MPMX19_03742	0.59	-0.5
1,184,930	+		MPMX19_03742	0.59	-0.4
1,184,930	+		MPMX19_03742	0.59	+0.1
1,184,930	+		MPMX19_03742	0.59	-1.4
1,184,930	+		MPMX19_03742	0.59	-1.4
1,184,930	+		MPMX19_03742	0.59	+0.1
1,184,930	+		MPMX19_03742	0.59	-1.1
1,184,930	+		MPMX19_03742	0.59	-0.6
1,184,930	+		MPMX19_03742	0.59	-0.2
1,184,930	+		MPMX19_03742	0.59	+0.2
1,184,930	+		MPMX19_03742	0.59	-0.1
1,184,930	+		MPMX19_03742	0.59	-1.2
1,184,930	+		MPMX19_03742	0.59	-2.5
1,184,930	+		MPMX19_03742	0.59	-1.5
1,184,930	+		MPMX19_03742	0.59	+0.1
1,184,931	-		MPMX19_03742	0.59	+0.0
1,184,931	-		MPMX19_03742	0.59	-0.1
1,184,931	-		MPMX19_03742	0.59	-0.1
1,184,931	-		MPMX19_03742	0.59	-1.7
1,184,931	-		MPMX19_03742	0.59	+2.5
1,184,931	-		MPMX19_03742	0.59	-2.2
1,184,931	-		MPMX19_03742	0.59	-0.1
1,184,931	-		MPMX19_03742	0.59	+0.6
1,184,931	-		MPMX19_03742	0.59	+0.5
1,184,931	-		MPMX19_03742	0.59	+0.6
1,184,931	-		MPMX19_03742	0.59	-2.4
1,184,931	-		MPMX19_03742	0.59	-0.5
1,185,138	+				-0.1
1,185,138	+				-0.5
1,185,138	+				+0.6
1,185,138	+				-0.8
1,185,138	+				-1.0
1,185,139	-				-1.5
1,185,139	-				-0.5
1,185,139	-				-0.5
1,185,139	-				+0.0
1,185,139	-				+0.3
1,185,139	-				+0.3
1,185,261	+				-2.0
1,185,261	+				-1.9
1,185,262	-				-0.2
1,185,262	-				-1.4
1,185,262	-				-1.3
1,185,263	+				+0.2
1,185,263	+				-2.3
1,185,263	+				-0.6
1,185,274	+				-0.1
1,185,274	+				-0.4
1,185,274	+				+1.0
1,185,275	-				-0.1
1,185,275	-				-0.6
1,185,275	-				-1.1
1,185,275	-				+0.2
1,185,276	+				-2.1
1,185,276	+				-0.1
1,185,276	+				-0.0
1,185,276	+				-1.8
1,185,277	-				-0.3
1,185,277	-				-0.5
1,185,277	-				-0.9
1,185,277	-				+2.0
1,185,277	-				-1.0
1,185,277	-				-2.5
1,185,307	+				+0.0
1,185,307	+				+0.0
1,185,307	+				+0.5
1,185,307	+				+0.8
1,185,307	+				-0.3
1,185,307	+				-1.0
1,185,307	+				-0.8
1,185,307	+				+0.7
1,185,307	+				-0.3
1,185,307	+				-0.3
1,185,307	+				-1.0
1,185,307	+				+0.5
1,185,308	-				-0.2
1,185,308	-				+0.2
1,185,308	-				-1.3
1,185,308	-				-0.8
1,185,308	-				-1.0
1,185,308	-				-0.6
1,185,308	-				-0.5
1,185,308	-				-0.8
1,185,308	-				-1.9
1,185,308	-				-0.3
1,185,308	-				+0.5
1,185,308	-				-1.3
1,185,308	-				-1.0
1,185,308	-				-1.5
1,185,308	-				-1.5
1,185,308	-				-0.6
1,185,309	+				-1.1
1,185,309	+				-0.0
1,185,309	+				-1.1
1,185,309	+				+0.2
1,185,309	+				-0.8
1,185,310	-				-2.2
1,185,310	-				+0.0
1,185,310	-				+0.2
1,185,310	-				-1.5
1,185,310	-				-1.2
1,185,625	+				+0.0
1,185,625	+				+1.0
1,185,625	+				+0.0
1,185,625	+				+0.0
1,185,625	+				+0.3
1,185,625	+				-0.8
1,185,625	+				-0.8
1,185,625	+				-0.4
1,185,625	+				-0.7
1,185,625	+				+0.3
1,185,625	+				-0.7
1,185,625	+				-0.5
1,185,625	+				-1.5
1,185,626	-				-0.8
1,185,626	-				-1.1
1,185,626	-				+0.3
1,185,626	-				-0.7
1,185,626	-				-0.1
1,185,626	-				+0.6
1,185,626	-				+1.6
1,185,626	-				-0.3
1,185,626	-				+0.0
1,185,626	-				-1.4
1,185,626	-				+0.3
1,185,626	-				-0.4
1,185,626	-				+0.2
1,185,626	-				-0.3
1,185,626	-				+1.0
1,185,626	-				-0.2
1,185,626	-				-1.7
1,185,626	-				+1.0
1,185,626	-				-0.1
1,185,626	-				+0.2
1,185,626	-				+0.5
1,185,626	-				-0.2
1,185,626	-				+0.5
1,185,627	+				+0.3
1,185,627	+				-0.1
1,185,627	+				-1.6
1,185,627	+				+0.8
1,185,627	+				-0.8
1,185,627	+				-1.1
1,185,627	+				-0.6
1,185,627	+				-0.8
1,185,627	+				-1.3
1,185,627	+				-1.5
1,185,627	+				-0.5
1,185,627	+				+0.5
1,185,627	+				-0.7
1,185,627	+				+0.5
1,185,627	+				-0.3
1,185,627	+				-1.5
1,185,628	-				+0.8
1,185,628	-				+0.7
1,185,628	-				-1.1
1,185,628	-				-0.7
1,185,628	-				+1.5
1,185,628	-				+0.5
1,185,628	-				-0.1
1,185,628	-				-0.1
1,185,628	-				-0.4
1,185,628	-				-0.1
1,185,628	-				-0.6
1,185,628	-				-1.0
1,185,628	-				-0.4
1,185,628	-				-0.1
1,185,628	-				+0.1
1,185,628	-				-0.9
1,185,628	-				-1.0
1,185,628	-				-1.4
1,185,628	-				+0.8
1,185,628	-				+0.2
1,185,628	-				-1.4
1,185,628	-				-1.0
1,185,628	-				-1.1
1,185,629	+				-0.3
1,185,629	+				-1.0
1,185,629	+				+0.5
1,185,629	+				-1.4
1,185,629	+				-1.1
1,185,629	+				-1.1
1,185,629	+				-0.8
1,185,629	+				-1.5
1,185,629	+				-0.4
1,185,629	+				-0.8
1,185,629	+				+0.8
1,185,629	+				-1.2
1,185,629	+				+0.1
1,185,629	+				+0.5
1,185,629	+				+0.0
1,185,629	+				-2.5
1,185,629	+				-0.7
1,185,629	+				+0.2
1,185,629	+				+0.3
1,185,630	-				-0.6
1,185,630	-				-0.8
1,185,630	-				-0.5
1,185,630	-				-1.1
1,185,630	-				-1.4
1,185,630	-				-2.1
1,185,630	-				+0.3
1,185,630	-				+0.5
1,185,630	-				+0.3
1,185,630	-				-1.5
1,185,630	-				-2.8
1,185,630	-				+0.1
1,185,630	-				-0.3
1,185,630	-				-2.0
1,185,630	-				-1.3
1,185,630	-				+1.8
1,185,630	-				-1.1
1,185,630	-				-0.8
1,185,630	-				+0.3
1,185,630	-				-2.1
1,185,630	-				-1.0
1,185,630	-				-0.2
1,185,630	-				-0.4
1,185,630	-				-0.5
1,185,630	-				+0.2
1,185,630	-				-0.2
1,185,630	-				-0.2
1,185,630	-				-1.5
1,185,630	-				-0.8
1,185,639	-				+0.6
1,185,639	-				-0.7
1,185,639	-				-0.1
1,185,639	-				-1.2
1,185,639	-				-0.7
1,185,641	-				+0.9
1,185,641	-				-0.7
1,185,641	-				-0.5
1,185,672	+				+1.0
1,185,672	+				-1.1
1,185,672	+				+0.0
1,185,672	+				+1.2
1,185,673	-				-0.1
1,185,673	-				+0.7
1,185,673	-				+0.0
1,185,674	+				-0.6
1,185,674	+				-1.0
1,185,674	+				-0.5
1,185,675	-				+0.0
1,185,815	+				-1.0
1,185,815	+				-1.1
1,185,815	+				+0.7
1,185,815	+				-0.8
1,185,816	-				-0.5
1,185,816	-				-0.3
1,185,816	-				-1.2
1,185,816	-				-0.6
1,185,816	-				-0.2
1,185,867	+		MPMX19_03744	0.13	-0.5
1,185,867	+		MPMX19_03744	0.13	-1.7
1,185,867	+		MPMX19_03744	0.13	+0.6
1,185,867	+		MPMX19_03744	0.13	-0.5
1,185,867	+		MPMX19_03744	0.13	-1.1
1,185,868	-		MPMX19_03744	0.14	+1.2
1,185,868	-		MPMX19_03744	0.14	-0.0
1,185,868	-		MPMX19_03744	0.14	-0.2
1,185,907	-		MPMX19_03744	0.58	-0.8
1,185,907	-		MPMX19_03744	0.58	-3.5
1,185,907	-		MPMX19_03744	0.58	-2.1
1,185,915	+		MPMX19_03744	0.67	+0.3
1,185,915	+		MPMX19_03744	0.67	+1.2
1,185,915	+		MPMX19_03744	0.67	+0.2
1,185,916	-		MPMX19_03744	0.68	-1.3
1,185,916	-		MPMX19_03744	0.68	-2.0
1,185,916	-		MPMX19_03744	0.68	-0.3
1,185,916	-		MPMX19_03744	0.68	+0.0
1,185,916	-		MPMX19_03744	0.68	-0.3
1,186,105	+				-0.4
1,186,106	-				+0.0
1,186,106	-				+0.6
1,186,153	+		MPMX19_03745	0.11	-1.0
1,186,153	+		MPMX19_03745	0.11	-1.0
1,186,153	+		MPMX19_03745	0.11	-1.5
1,186,153	+		MPMX19_03745	0.11	-0.8
1,186,154	-		MPMX19_03745	0.11	+0.5
1,186,154	-		MPMX19_03745	0.11	+0.7
1,186,160	+		MPMX19_03745	0.12	-0.8