Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03657

Experiment: NL-CCM, start OD=0.3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM, start OD=0.3
1,093,983	+				+0.2
1,093,999	-				-1.4
1,094,121	+		MPMX19_03655	0.40	+0.6
1,094,122	-		MPMX19_03655	0.41	+0.0
1,094,187	+		MPMX19_03655	0.64	+0.5
1,094,188	-		MPMX19_03655	0.64	+0.2
1,094,188	-		MPMX19_03655	0.64	+0.6
1,094,354	+		MPMX19_03656	0.11	-0.8
1,094,354	+		MPMX19_03656	0.11	-0.5
1,094,354	+		MPMX19_03656	0.11	-1.4
1,094,355	-		MPMX19_03656	0.11	-0.9
1,094,355	-		MPMX19_03656	0.11	+1.3
1,094,355	-		MPMX19_03656	0.11	-0.5
1,094,355	-		MPMX19_03656	0.11	-0.9
1,094,383	-		MPMX19_03656	0.15	-0.5
1,094,383	-		MPMX19_03656	0.15	-0.1
1,094,509	-		MPMX19_03656	0.35	-1.0
1,094,576	+		MPMX19_03656	0.45	+0.0
1,094,576	+		MPMX19_03656	0.45	-1.0
1,094,576	+		MPMX19_03656	0.45	-1.7
1,094,576	+		MPMX19_03656	0.45	-0.3
1,094,576	+		MPMX19_03656	0.45	-0.6
1,094,576	+		MPMX19_03656	0.45	-1.3
1,094,576	+		MPMX19_03656	0.45	-1.4
1,094,576	+		MPMX19_03656	0.45	-1.5
1,094,576	+		MPMX19_03656	0.45	-0.8
1,094,576	+		MPMX19_03656	0.45	-0.5
1,094,576	+		MPMX19_03656	0.45	-0.9
1,094,576	+		MPMX19_03656	0.45	+1.0
1,094,576	+		MPMX19_03656	0.45	-0.8
1,094,577	-		MPMX19_03656	0.45	-1.0
1,094,577	-		MPMX19_03656	0.45	-0.8
1,094,577	-		MPMX19_03656	0.45	-1.0
1,094,577	-		MPMX19_03656	0.45	-1.1
1,094,577	-		MPMX19_03656	0.45	-1.4
1,094,577	-		MPMX19_03656	0.45	+1.0
1,094,577	-		MPMX19_03656	0.45	+1.0
1,094,577	-		MPMX19_03656	0.45	+1.5
1,094,577	-		MPMX19_03656	0.45	-0.4
1,094,577	-		MPMX19_03656	0.45	-0.4
1,094,577	-		MPMX19_03656	0.45	+0.0
1,094,577	-		MPMX19_03656	0.45	-0.8
1,094,577	-		MPMX19_03656	0.45	+0.5
1,094,577	-		MPMX19_03656	0.45	+0.6
1,094,577	-		MPMX19_03656	0.45	-1.4
1,094,577	-		MPMX19_03656	0.45	-2.0
1,094,577	-		MPMX19_03656	0.45	+0.1
1,094,687	+		MPMX19_03656	0.62	-1.0
1,094,687	+		MPMX19_03656	0.62	+0.7
1,094,688	-		MPMX19_03656	0.62	+0.0
1,094,688	-		MPMX19_03656	0.62	+0.3
1,094,688	-		MPMX19_03656	0.62	-1.5
1,094,688	-		MPMX19_03656	0.62	-0.5
1,094,840	+		MPMX19_03656	0.86	-0.8
1,094,840	+		MPMX19_03656	0.86	-1.5
1,094,840	+		MPMX19_03656	0.86	+0.3
1,094,840	+		MPMX19_03656	0.86	+1.6
1,094,840	+		MPMX19_03656	0.86	-0.8
1,094,840	+		MPMX19_03656	0.86	-0.6
1,094,840	+		MPMX19_03656	0.86	-1.1
1,094,840	+		MPMX19_03656	0.86	-1.3
1,094,841	-		MPMX19_03656	0.86	+0.3
1,094,841	-		MPMX19_03656	0.86	+0.7
1,094,847	-		MPMX19_03656	0.87	-0.5
1,095,039	+				+0.7
1,095,039	+				-2.0
1,095,039	+				-1.0
1,095,087	+		MPMX19_03657	0.10	+0.2
1,095,087	+		MPMX19_03657	0.10	-0.7
1,095,087	+		MPMX19_03657	0.10	+0.0
1,095,087	+		MPMX19_03657	0.10	-0.6
1,095,088	-		MPMX19_03657	0.10	-1.1
1,095,088	-		MPMX19_03657	0.10	-0.9
1,095,088	-		MPMX19_03657	0.10	+0.2
1,095,216	+		MPMX19_03657	0.20	+1.5
1,095,216	+		MPMX19_03657	0.20	-0.8
1,095,217	-		MPMX19_03657	0.20	-1.5
1,095,217	-		MPMX19_03657	0.20	+0.0
1,095,217	-		MPMX19_03657	0.20	-1.6
1,095,217	-		MPMX19_03657	0.20	-0.5
1,095,217	-		MPMX19_03657	0.20	-2.2
1,095,255	+		MPMX19_03657	0.23	+1.2
1,095,255	+		MPMX19_03657	0.23	+0.7
1,095,531	+		MPMX19_03657	0.43	+0.5
1,095,531	+		MPMX19_03657	0.43	+0.9
1,095,531	+		MPMX19_03657	0.43	-1.0
1,095,531	+		MPMX19_03657	0.43	+0.6
1,095,531	+		MPMX19_03657	0.43	-1.4
1,095,531	+		MPMX19_03657	0.43	-1.7
1,095,531	+		MPMX19_03657	0.43	-1.0
1,095,531	+		MPMX19_03657	0.43	+1.0
1,095,531	+		MPMX19_03657	0.43	+0.2
1,095,531	+		MPMX19_03657	0.43	-1.8
1,095,531	+		MPMX19_03657	0.43	+0.1
1,095,531	+		MPMX19_03657	0.43	-2.0
1,095,531	+		MPMX19_03657	0.43	-1.8
1,095,531	+		MPMX19_03657	0.43	-2.2
1,095,531	+		MPMX19_03657	0.43	-0.8
1,095,531	+		MPMX19_03657	0.43	-0.8
1,095,531	+		MPMX19_03657	0.43	-2.1
1,095,531	+		MPMX19_03657	0.43	+0.7
1,095,531	+		MPMX19_03657	0.43	+0.3
1,095,531	+		MPMX19_03657	0.43	+0.7
1,095,531	+		MPMX19_03657	0.43	-2.2
1,095,532	-		MPMX19_03657	0.43	-0.5
1,095,532	-		MPMX19_03657	0.43	-1.4
1,095,532	-		MPMX19_03657	0.43	-1.9
1,095,532	-		MPMX19_03657	0.43	-1.2
1,095,532	-		MPMX19_03657	0.43	-1.3
1,095,532	-		MPMX19_03657	0.43	+0.6
1,095,532	-		MPMX19_03657	0.43	+0.5
1,095,532	-		MPMX19_03657	0.43	-1.3
1,095,532	-		MPMX19_03657	0.43	-1.5
1,095,532	-		MPMX19_03657	0.43	-1.5
1,095,532	-		MPMX19_03657	0.43	-0.5
1,095,532	-		MPMX19_03657	0.43	+0.7
1,095,532	-		MPMX19_03657	0.43	-0.6
1,095,532	-		MPMX19_03657	0.43	+0.5
1,095,532	-		MPMX19_03657	0.43	+2.0
1,095,532	-		MPMX19_03657	0.43	+0.3
1,095,532	-		MPMX19_03657	0.43	-0.5
1,095,532	-		MPMX19_03657	0.43	-0.0
1,095,532	-		MPMX19_03657	0.43	-1.3
1,095,532	-		MPMX19_03657	0.43	-1.0
1,095,532	-		MPMX19_03657	0.43	-1.1
1,095,532	-		MPMX19_03657	0.43	-0.0
1,095,532	-		MPMX19_03657	0.43	-0.1
1,095,533	-		MPMX19_03657	0.43	-0.8
1,095,801	+		MPMX19_03657	0.62	+0.0
1,095,801	+		MPMX19_03657	0.62	-0.3
1,095,801	+		MPMX19_03657	0.62	-1.1
1,095,801	+		MPMX19_03657	0.62	-0.8
1,095,801	+		MPMX19_03657	0.62	+0.6
1,095,801	+		MPMX19_03657	0.62	-2.5
1,095,801	+		MPMX19_03657	0.62	+1.2
1,095,801	+		MPMX19_03657	0.62	-0.3
1,095,801	+		MPMX19_03657	0.62	-2.3
1,095,801	+		MPMX19_03657	0.62	-0.5
1,095,801	+		MPMX19_03657	0.62	-0.2
1,095,801	+		MPMX19_03657	0.62	-0.3
1,095,801	+		MPMX19_03657	0.62	-1.1
1,095,801	+		MPMX19_03657	0.62	+0.5
1,095,801	+		MPMX19_03657	0.62	-0.1
1,095,802	-		MPMX19_03657	0.63	-1.0
1,095,802	-		MPMX19_03657	0.63	-0.4
1,095,802	-		MPMX19_03657	0.63	-0.7
1,095,802	-		MPMX19_03657	0.63	-0.1
1,095,802	-		MPMX19_03657	0.63	-0.5
1,095,802	-		MPMX19_03657	0.63	-0.5
1,095,802	-		MPMX19_03657	0.63	-2.6
1,095,802	-		MPMX19_03657	0.63	+0.0
1,096,311	+				-1.4
1,096,311	+				+0.5
1,096,311	+				-1.1
1,096,312	-				-0.5
1,096,312	-				+0.5
1,096,844	+		MPMX19_03659	0.20	-1.3
1,096,844	+		MPMX19_03659	0.20	+0.3
1,096,844	+		MPMX19_03659	0.20	+0.2
1,096,844	+		MPMX19_03659	0.20	-0.8
1,096,845	-		MPMX19_03659	0.20	-1.5
1,096,845	-		MPMX19_03659	0.20	+0.3
1,096,943	+		MPMX19_03659	0.30	+1.9
1,096,943	+		MPMX19_03659	0.30	+0.0
1,096,943	+		MPMX19_03659	0.30	+1.0
1,096,944	-		MPMX19_03659	0.30	+2.0
1,096,944	-		MPMX19_03659	0.30	+0.6
1,096,944	-		MPMX19_03659	0.30	+0.1
1,096,944	-		MPMX19_03659	0.30	+0.3
1,096,944	-		MPMX19_03659	0.30	+0.0
1,096,944	-		MPMX19_03659	0.30	-0.5
1,096,944	-		MPMX19_03659	0.30	-0.3
1,097,086	+		MPMX19_03659	0.45	+1.3
1,097,087	-		MPMX19_03659	0.45	-1.4
1,097,156	+		MPMX19_03659	0.52	-0.3
1,097,156	+		MPMX19_03659	0.52	-0.1
1,097,156	+		MPMX19_03659	0.52	+0.5
1,097,156	+		MPMX19_03659	0.52	-1.2
1,097,156	+		MPMX19_03659	0.52	+0.6
1,097,156	+		MPMX19_03659	0.52	+0.0
1,097,156	+		MPMX19_03659	0.52	-0.5
1,097,156	+		MPMX19_03659	0.52	+0.0
1,097,156	+		MPMX19_03659	0.52	-0.5
1,097,156	+		MPMX19_03659	0.52	+0.5
1,097,157	-		MPMX19_03659	0.52	-1.2
1,097,157	-		MPMX19_03659	0.52	+0.7
1,097,157	-		MPMX19_03659	0.52	-0.1
1,097,157	-		MPMX19_03659	0.52	-1.1
1,097,157	-		MPMX19_03659	0.52	-0.3
1,097,157	-		MPMX19_03659	0.52	-0.8
1,097,157	-		MPMX19_03659	0.52	-0.4
1,097,157	-		MPMX19_03659	0.52	-0.2
1,097,223	-		MPMX19_03659	0.59	-1.0