Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03574 and MPMX19_03575 are separated by 12 nucleotides MPMX19_03575 and MPMX19_03576 are separated by 153 nucleotides
MPMX19_03574: MPMX19_03574 - Aurachin B dehydrogenase, at 995,399 to 996,286
_03574
MPMX19_03575: MPMX19_03575 - HTH-type transcriptional regulator NimR, at 996,299 to 997,075
_03575
MPMX19_03576: MPMX19_03576 - Fosmidomycin resistance protein, at 997,229 to 998,425
_03576
Position (kb) 996
997
998 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 995.316 kb on + strand at 995.317 kb on - strand at 995.318 kb on + strand at 995.318 kb on + strand at 995.321 kb on + strand at 995.322 kb on - strand at 995.349 kb on - strand at 995.404 kb on + strand at 995.404 kb on + strand at 995.404 kb on + strand at 995.404 kb on + strand at 995.404 kb on + strand at 995.404 kb on + strand at 995.404 kb on + strand at 995.405 kb on - strand at 995.405 kb on - strand at 995.405 kb on - strand at 995.405 kb on - strand at 995.405 kb on - strand at 995.405 kb on - strand at 995.948 kb on + strand, within MPMX19_03574 at 995.948 kb on + strand, within MPMX19_03574 at 995.948 kb on + strand, within MPMX19_03574 at 995.948 kb on + strand, within MPMX19_03574 at 995.948 kb on + strand, within MPMX19_03574 at 995.948 kb on + strand, within MPMX19_03574 at 995.948 kb on + strand, within MPMX19_03574 at 995.948 kb on + strand, within MPMX19_03574 at 995.948 kb on + strand, within MPMX19_03574 at 995.949 kb on - strand, within MPMX19_03574 at 995.949 kb on - strand, within MPMX19_03574 at 995.949 kb on - strand, within MPMX19_03574 at 995.949 kb on - strand, within MPMX19_03574 at 995.951 kb on - strand, within MPMX19_03574 at 996.008 kb on + strand, within MPMX19_03574 at 996.318 kb on + strand at 996.381 kb on + strand, within MPMX19_03575 at 996.382 kb on - strand, within MPMX19_03575 at 996.382 kb on - strand, within MPMX19_03575 at 996.382 kb on - strand, within MPMX19_03575 at 996.663 kb on + strand, within MPMX19_03575 at 996.708 kb on + strand, within MPMX19_03575 at 996.709 kb on - strand, within MPMX19_03575 at 996.709 kb on - strand, within MPMX19_03575 at 996.709 kb on - strand, within MPMX19_03575 at 996.709 kb on - strand, within MPMX19_03575 at 996.709 kb on - strand, within MPMX19_03575 at 997.005 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.133 kb on + strand at 997.134 kb on - strand at 997.134 kb on - strand at 997.134 kb on - strand at 997.134 kb on - strand at 997.134 kb on - strand at 997.139 kb on + strand at 997.140 kb on - strand at 997.140 kb on - strand at 997.140 kb on - strand at 997.140 kb on - strand at 997.140 kb on - strand at 997.237 kb on + strand at 997.237 kb on + strand at 997.346 kb on + strand at 997.409 kb on + strand, within MPMX19_03576 at 997.409 kb on + strand, within MPMX19_03576 at 997.409 kb on + strand, within MPMX19_03576 at 997.409 kb on + strand, within MPMX19_03576 at 997.410 kb on - strand, within MPMX19_03576 at 997.475 kb on + strand, within MPMX19_03576 at 997.475 kb on + strand, within MPMX19_03576 at 997.476 kb on - strand, within MPMX19_03576 at 997.476 kb on - strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.925 kb on + strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.926 kb on - strand, within MPMX19_03576 at 997.931 kb on + strand, within MPMX19_03576 at 997.931 kb on + strand, within MPMX19_03576 at 997.932 kb on - strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.952 kb on + strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.953 kb on - strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.955 kb on + strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.956 kb on - strand, within MPMX19_03576 at 997.964 kb on + strand, within MPMX19_03576 at 997.964 kb on + strand, within MPMX19_03576 at 997.964 kb on + strand, within MPMX19_03576 at 997.965 kb on - strand, within MPMX19_03576
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 995,316 + -0.9 995,317 - +0.9 995,318 + -1.1 995,318 + -0.2 995,321 + -0.1 995,322 - +0.0 995,349 - -0.6 995,404 + -1.4 995,404 + -1.4 995,404 + -0.3 995,404 + -1.0 995,404 + +0.5 995,404 + -1.3 995,404 + +0.5 995,405 - +0.0 995,405 - -0.5 995,405 - -1.4 995,405 - -0.3 995,405 - -0.5 995,405 - -0.7 995,948 + MPMX19_03574 0.62 +1.5 995,948 + MPMX19_03574 0.62 +0.0 995,948 + MPMX19_03574 0.62 -1.3 995,948 + MPMX19_03574 0.62 +0.3 995,948 + MPMX19_03574 0.62 +0.0 995,948 + MPMX19_03574 0.62 +0.3 995,948 + MPMX19_03574 0.62 -0.8 995,948 + MPMX19_03574 0.62 +0.0 995,948 + MPMX19_03574 0.62 +0.6 995,949 - MPMX19_03574 0.62 -0.9 995,949 - MPMX19_03574 0.62 -1.0 995,949 - MPMX19_03574 0.62 -0.1 995,949 - MPMX19_03574 0.62 -1.6 995,951 - MPMX19_03574 0.62 +0.3 996,008 + MPMX19_03574 0.69 -1.0 996,318 + -0.1 996,381 + MPMX19_03575 0.11 +0.6 996,382 - MPMX19_03575 0.11 -0.9 996,382 - MPMX19_03575 0.11 +0.4 996,382 - MPMX19_03575 0.11 -1.1 996,663 + MPMX19_03575 0.47 +0.1 996,708 + MPMX19_03575 0.53 -0.8 996,709 - MPMX19_03575 0.53 +0.5 996,709 - MPMX19_03575 0.53 +0.2 996,709 - MPMX19_03575 0.53 +0.3 996,709 - MPMX19_03575 0.53 +0.0 996,709 - MPMX19_03575 0.53 -1.1 997,005 + -1.1 997,133 + -0.3 997,133 + +0.3 997,133 + -1.2 997,133 + +0.0 997,133 + +0.2 997,133 + +0.4 997,133 + -0.4 997,133 + +0.6 997,133 + +1.0 997,134 - -2.2 997,134 - -0.2 997,134 - -1.8 997,134 - -0.5 997,134 - -1.3 997,139 + +0.0 997,140 - -1.4 997,140 - -0.3 997,140 - +0.5 997,140 - -0.7 997,140 - -1.8 997,237 + -0.4 997,237 + +1.6 997,346 + -2.1 997,409 + MPMX19_03576 0.15 +0.2 997,409 + MPMX19_03576 0.15 -0.4 997,409 + MPMX19_03576 0.15 -0.6 997,409 + MPMX19_03576 0.15 -0.7 997,410 - MPMX19_03576 0.15 -1.5 997,475 + MPMX19_03576 0.21 -1.5 997,475 + MPMX19_03576 0.21 -1.7 997,476 - MPMX19_03576 0.21 -1.4 997,476 - MPMX19_03576 0.21 +2.5 997,925 + MPMX19_03576 0.58 +0.5 997,925 + MPMX19_03576 0.58 +1.2 997,925 + MPMX19_03576 0.58 -2.8 997,925 + MPMX19_03576 0.58 -0.3 997,925 + MPMX19_03576 0.58 -0.3 997,925 + MPMX19_03576 0.58 -0.4 997,925 + MPMX19_03576 0.58 +0.3 997,925 + MPMX19_03576 0.58 +1.2 997,925 + MPMX19_03576 0.58 -0.8 997,926 - MPMX19_03576 0.58 +0.0 997,926 - MPMX19_03576 0.58 -1.1 997,926 - MPMX19_03576 0.58 -0.0 997,926 - MPMX19_03576 0.58 -1.0 997,926 - MPMX19_03576 0.58 -0.1 997,926 - MPMX19_03576 0.58 -0.7 997,926 - MPMX19_03576 0.58 +0.1 997,926 - MPMX19_03576 0.58 -0.6 997,926 - MPMX19_03576 0.58 -1.2 997,931 + MPMX19_03576 0.59 -1.1 997,931 + MPMX19_03576 0.59 -0.4 997,932 - MPMX19_03576 0.59 -1.2 997,952 + MPMX19_03576 0.60 +1.6 997,952 + MPMX19_03576 0.60 -1.7 997,952 + MPMX19_03576 0.60 +0.9 997,952 + MPMX19_03576 0.60 -0.6 997,952 + MPMX19_03576 0.60 -0.5 997,953 - MPMX19_03576 0.60 +1.0 997,953 - MPMX19_03576 0.60 -1.4 997,953 - MPMX19_03576 0.60 -0.4 997,953 - MPMX19_03576 0.60 -2.4 997,953 - MPMX19_03576 0.60 +0.3 997,953 - MPMX19_03576 0.60 -1.4 997,953 - MPMX19_03576 0.60 -0.5 997,955 + MPMX19_03576 0.61 +0.2 997,955 + MPMX19_03576 0.61 -0.1 997,955 + MPMX19_03576 0.61 -2.0 997,955 + MPMX19_03576 0.61 -1.4 997,955 + MPMX19_03576 0.61 +0.2 997,955 + MPMX19_03576 0.61 +0.1 997,955 + MPMX19_03576 0.61 -2.2 997,955 + MPMX19_03576 0.61 -1.1 997,955 + MPMX19_03576 0.61 -1.0 997,955 + MPMX19_03576 0.61 -0.4 997,956 - MPMX19_03576 0.61 +0.9 997,956 - MPMX19_03576 0.61 -1.0 997,956 - MPMX19_03576 0.61 +0.5 997,956 - MPMX19_03576 0.61 -0.8 997,956 - MPMX19_03576 0.61 -2.0 997,956 - MPMX19_03576 0.61 -1.0 997,956 - MPMX19_03576 0.61 -0.2 997,956 - MPMX19_03576 0.61 -0.2 997,956 - MPMX19_03576 0.61 +0.2 997,956 - MPMX19_03576 0.61 +0.5 997,956 - MPMX19_03576 0.61 -1.1 997,956 - MPMX19_03576 0.61 -0.5 997,956 - MPMX19_03576 0.61 -0.3 997,964 + MPMX19_03576 0.61 +0.6 997,964 + MPMX19_03576 0.61 +3.0 997,964 + MPMX19_03576 0.61 +0.8 997,965 - MPMX19_03576 0.61 +0.6
Or see this region's nucleotide sequence