Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03569

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03568 and MPMX19_03569 are separated by 63 nucleotidesMPMX19_03569 and MPMX19_03570 are separated by 182 nucleotides MPMX19_03568: MPMX19_03568 - 2-methyl-1,2-propanediol dehydrogenase, at 988,979 to 990,550 _03568 MPMX19_03569: MPMX19_03569 - hypothetical protein, at 990,614 to 991,249 _03569 MPMX19_03570: MPMX19_03570 - Phenoxybenzoate dioxygenase subunit beta, at 991,432 to 992,412 _03570 Position (kb) 990 991 992Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 989.618 kb on + strand, within MPMX19_03568at 989.618 kb on + strand, within MPMX19_03568at 989.618 kb on + strand, within MPMX19_03568at 989.618 kb on + strand, within MPMX19_03568at 989.619 kb on - strand, within MPMX19_03568at 989.619 kb on - strand, within MPMX19_03568at 989.726 kb on + strand, within MPMX19_03568at 989.726 kb on + strand, within MPMX19_03568at 989.726 kb on + strand, within MPMX19_03568at 989.726 kb on + strand, within MPMX19_03568at 989.727 kb on - strand, within MPMX19_03568at 989.727 kb on - strand, within MPMX19_03568at 989.727 kb on - strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.879 kb on + strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.880 kb on - strand, within MPMX19_03568at 989.906 kb on + strand, within MPMX19_03568at 989.936 kb on + strand, within MPMX19_03568at 989.936 kb on + strand, within MPMX19_03568at 989.936 kb on + strand, within MPMX19_03568at 989.936 kb on + strand, within MPMX19_03568at 989.936 kb on + strand, within MPMX19_03568at 989.936 kb on + strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 989.937 kb on - strand, within MPMX19_03568at 990.012 kb on - strand, within MPMX19_03568at 990.107 kb on + strand, within MPMX19_03568at 990.108 kb on - strand, within MPMX19_03568at 990.108 kb on - strand, within MPMX19_03568at 990.108 kb on - strand, within MPMX19_03568at 990.108 kb on - strand, within MPMX19_03568at 990.266 kb on + strand, within MPMX19_03568at 990.266 kb on + strand, within MPMX19_03568at 990.266 kb on + strand, within MPMX19_03568at 990.267 kb on - strand, within MPMX19_03568at 990.267 kb on - strand, within MPMX19_03568at 990.287 kb on + strand, within MPMX19_03568at 990.287 kb on + strand, within MPMX19_03568at 990.287 kb on + strand, within MPMX19_03568at 990.287 kb on + strand, within MPMX19_03568at 990.287 kb on + strand, within MPMX19_03568at 990.287 kb on + strand, within MPMX19_03568at 990.288 kb on - strand, within MPMX19_03568at 990.288 kb on - strand, within MPMX19_03568at 990.288 kb on - strand, within MPMX19_03568at 990.329 kb on + strand, within MPMX19_03568at 990.515 kb on + strandat 990.515 kb on + strandat 990.515 kb on + strandat 990.515 kb on + strandat 990.515 kb on + strandat 990.516 kb on - strandat 990.516 kb on - strandat 990.643 kb on + strandat 990.732 kb on + strand, within MPMX19_03569at 990.732 kb on + strand, within MPMX19_03569at 990.732 kb on + strand, within MPMX19_03569at 990.732 kb on + strand, within MPMX19_03569at 990.733 kb on - strand, within MPMX19_03569at 990.750 kb on + strand, within MPMX19_03569at 990.750 kb on + strand, within MPMX19_03569at 990.751 kb on - strand, within MPMX19_03569at 990.795 kb on + strand, within MPMX19_03569at 990.795 kb on + strand, within MPMX19_03569at 990.795 kb on + strand, within MPMX19_03569at 990.795 kb on + strand, within MPMX19_03569at 990.795 kb on + strand, within MPMX19_03569at 990.796 kb on - strand, within MPMX19_03569at 990.796 kb on - strand, within MPMX19_03569at 990.796 kb on - strand, within MPMX19_03569at 991.440 kb on + strandat 991.440 kb on + strandat 991.440 kb on + strandat 991.441 kb on - strandat 991.624 kb on + strand, within MPMX19_03570at 991.624 kb on + strand, within MPMX19_03570at 991.624 kb on + strand, within MPMX19_03570at 991.789 kb on + strand, within MPMX19_03570at 991.789 kb on + strand, within MPMX19_03570at 991.789 kb on + strand, within MPMX19_03570at 991.789 kb on + strand, within MPMX19_03570at 991.789 kb on + strand, within MPMX19_03570at 991.790 kb on - strand, within MPMX19_03570at 991.790 kb on - strand, within MPMX19_03570at 991.790 kb on - strand, within MPMX19_03570at 991.879 kb on + strand, within MPMX19_03570at 991.879 kb on + strand, within MPMX19_03570at 991.880 kb on - strand, within MPMX19_03570at 991.880 kb on - strand, within MPMX19_03570at 991.880 kb on - strand, within MPMX19_03570at 991.880 kb on - strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.224 kb on + strand, within MPMX19_03570at 992.225 kb on - strand, within MPMX19_03570

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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989,618 + MPMX19_03568 0.41 +0.4
989,618 + MPMX19_03568 0.41 -1.3
989,618 + MPMX19_03568 0.41 -2.6
989,618 + MPMX19_03568 0.41 +2.0
989,619 - MPMX19_03568 0.41 -1.2
989,619 - MPMX19_03568 0.41 +0.2
989,726 + MPMX19_03568 0.48 +0.4
989,726 + MPMX19_03568 0.48 +0.2
989,726 + MPMX19_03568 0.48 -0.3
989,726 + MPMX19_03568 0.48 +0.2
989,727 - MPMX19_03568 0.48 +0.0
989,727 - MPMX19_03568 0.48 +0.7
989,727 - MPMX19_03568 0.48 -0.6
989,879 + MPMX19_03568 0.57 -1.2
989,879 + MPMX19_03568 0.57 +0.6
989,879 + MPMX19_03568 0.57 -0.7
989,879 + MPMX19_03568 0.57 -0.3
989,879 + MPMX19_03568 0.57 -0.2
989,879 + MPMX19_03568 0.57 -0.3
989,880 - MPMX19_03568 0.57 -0.6
989,880 - MPMX19_03568 0.57 -0.5
989,880 - MPMX19_03568 0.57 +0.2
989,880 - MPMX19_03568 0.57 -1.1
989,880 - MPMX19_03568 0.57 -1.1
989,880 - MPMX19_03568 0.57 -0.3
989,880 - MPMX19_03568 0.57 -1.7
989,906 + MPMX19_03568 0.59 -1.1
989,936 + MPMX19_03568 0.61 -1.7
989,936 + MPMX19_03568 0.61 -1.6
989,936 + MPMX19_03568 0.61 +0.8
989,936 + MPMX19_03568 0.61 -1.7
989,936 + MPMX19_03568 0.61 +2.0
989,936 + MPMX19_03568 0.61 -1.1
989,937 - MPMX19_03568 0.61 +0.4
989,937 - MPMX19_03568 0.61 -1.0
989,937 - MPMX19_03568 0.61 -1.4
989,937 - MPMX19_03568 0.61 +0.0
989,937 - MPMX19_03568 0.61 +0.1
989,937 - MPMX19_03568 0.61 -0.1
989,937 - MPMX19_03568 0.61 +1.3
989,937 - MPMX19_03568 0.61 -0.9
989,937 - MPMX19_03568 0.61 -0.7
989,937 - MPMX19_03568 0.61 -0.1
990,012 - MPMX19_03568 0.66 -0.7
990,107 + MPMX19_03568 0.72 -0.8
990,108 - MPMX19_03568 0.72 +0.4
990,108 - MPMX19_03568 0.72 -1.1
990,108 - MPMX19_03568 0.72 -0.9
990,108 - MPMX19_03568 0.72 +0.9
990,266 + MPMX19_03568 0.82 +1.7
990,266 + MPMX19_03568 0.82 -0.8
990,266 + MPMX19_03568 0.82 -0.1
990,267 - MPMX19_03568 0.82 -0.6
990,267 - MPMX19_03568 0.82 -1.0
990,287 + MPMX19_03568 0.83 +0.2
990,287 + MPMX19_03568 0.83 +0.2
990,287 + MPMX19_03568 0.83 +1.4
990,287 + MPMX19_03568 0.83 -0.2
990,287 + MPMX19_03568 0.83 -2.0
990,287 + MPMX19_03568 0.83 -1.3
990,288 - MPMX19_03568 0.83 -0.3
990,288 - MPMX19_03568 0.83 -0.0
990,288 - MPMX19_03568 0.83 +0.3
990,329 + MPMX19_03568 0.86 -1.7
990,515 + -2.0
990,515 + -1.6
990,515 + +0.4
990,515 + -1.3
990,515 + -0.5
990,516 - -1.0
990,516 - -0.4
990,643 + +0.2
990,732 + MPMX19_03569 0.19 -0.4
990,732 + MPMX19_03569 0.19 +0.0
990,732 + MPMX19_03569 0.19 -1.0
990,732 + MPMX19_03569 0.19 -0.7
990,733 - MPMX19_03569 0.19 +0.0
990,750 + MPMX19_03569 0.21 -1.1
990,750 + MPMX19_03569 0.21 -3.0
990,751 - MPMX19_03569 0.22 -0.3
990,795 + MPMX19_03569 0.28 +1.3
990,795 + MPMX19_03569 0.28 +0.8
990,795 + MPMX19_03569 0.28 -0.8
990,795 + MPMX19_03569 0.28 -0.6
990,795 + MPMX19_03569 0.28 +0.2
990,796 - MPMX19_03569 0.29 +0.4
990,796 - MPMX19_03569 0.29 +0.1
990,796 - MPMX19_03569 0.29 -0.1
991,440 + -1.1
991,440 + -0.6
991,440 + -1.3
991,441 - +0.4
991,624 + MPMX19_03570 0.20 -0.6
991,624 + MPMX19_03570 0.20 -1.1
991,624 + MPMX19_03570 0.20 +1.4
991,789 + MPMX19_03570 0.36 -1.3
991,789 + MPMX19_03570 0.36 +0.3
991,789 + MPMX19_03570 0.36 -0.4
991,789 + MPMX19_03570 0.36 -0.3
991,789 + MPMX19_03570 0.36 -1.4
991,790 - MPMX19_03570 0.36 -0.3
991,790 - MPMX19_03570 0.36 -1.8
991,790 - MPMX19_03570 0.36 -0.8
991,879 + MPMX19_03570 0.46 -2.3
991,879 + MPMX19_03570 0.46 -0.0
991,880 - MPMX19_03570 0.46 -0.5
991,880 - MPMX19_03570 0.46 -2.8
991,880 - MPMX19_03570 0.46 -0.3
991,880 - MPMX19_03570 0.46 -1.0
992,026 + MPMX19_03570 0.61 -0.2
992,026 + MPMX19_03570 0.61 +0.1
992,026 + MPMX19_03570 0.61 +0.3
992,026 + MPMX19_03570 0.61 -0.6
992,026 + MPMX19_03570 0.61 -0.5
992,026 + MPMX19_03570 0.61 -1.8
992,027 - MPMX19_03570 0.61 -0.6
992,027 - MPMX19_03570 0.61 -2.2
992,027 - MPMX19_03570 0.61 -0.2
992,027 - MPMX19_03570 0.61 -1.6
992,027 - MPMX19_03570 0.61 -1.5
992,027 - MPMX19_03570 0.61 -0.5
992,027 - MPMX19_03570 0.61 -0.3
992,224 + MPMX19_03570 0.81 +0.0
992,225 - MPMX19_03570 0.81 +0.2

Or see this region's nucleotide sequence