Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03562 and MPMX19_03563 are separated by 45 nucleotides MPMX19_03563 and MPMX19_03564 are separated by 118 nucleotides
MPMX19_03562: MPMX19_03562 - Propane 2-monooxygenase, hydroxylase component small subunit, at 982,928 to 984,061
_03562
MPMX19_03563: MPMX19_03563 - Propane 2-monooxygenase, reductase component, at 984,107 to 985,165
_03563
MPMX19_03564: MPMX19_03564 - Propane 2-monooxygenase, hydroxylase component large subunit, at 985,284 to 986,948
_03564
Position (kb) 984
985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 983.253 kb on + strand, within MPMX19_03562 at 983.253 kb on + strand, within MPMX19_03562 at 983.253 kb on + strand, within MPMX19_03562 at 983.382 kb on + strand, within MPMX19_03562 at 983.382 kb on + strand, within MPMX19_03562 at 983.383 kb on - strand, within MPMX19_03562 at 983.383 kb on - strand, within MPMX19_03562 at 983.413 kb on + strand, within MPMX19_03562 at 983.413 kb on + strand, within MPMX19_03562 at 983.414 kb on - strand, within MPMX19_03562 at 983.414 kb on - strand, within MPMX19_03562 at 983.520 kb on + strand, within MPMX19_03562 at 983.520 kb on + strand, within MPMX19_03562 at 983.520 kb on + strand, within MPMX19_03562 at 983.520 kb on + strand, within MPMX19_03562 at 983.521 kb on - strand, within MPMX19_03562 at 983.521 kb on - strand, within MPMX19_03562 at 983.521 kb on - strand, within MPMX19_03562 at 983.521 kb on - strand, within MPMX19_03562 at 983.554 kb on - strand, within MPMX19_03562 at 983.595 kb on + strand, within MPMX19_03562 at 983.595 kb on + strand, within MPMX19_03562 at 983.595 kb on + strand, within MPMX19_03562 at 983.595 kb on + strand, within MPMX19_03562 at 983.595 kb on + strand, within MPMX19_03562 at 983.596 kb on - strand, within MPMX19_03562 at 983.596 kb on - strand, within MPMX19_03562 at 983.596 kb on - strand, within MPMX19_03562 at 983.596 kb on - strand, within MPMX19_03562 at 983.596 kb on - strand, within MPMX19_03562 at 983.637 kb on + strand, within MPMX19_03562 at 983.637 kb on + strand, within MPMX19_03562 at 983.637 kb on + strand, within MPMX19_03562 at 983.638 kb on - strand, within MPMX19_03562 at 983.638 kb on - strand, within MPMX19_03562 at 983.638 kb on - strand, within MPMX19_03562 at 983.776 kb on - strand, within MPMX19_03562 at 983.856 kb on + strand, within MPMX19_03562 at 983.856 kb on + strand, within MPMX19_03562 at 983.857 kb on - strand, within MPMX19_03562 at 983.857 kb on - strand, within MPMX19_03562 at 983.857 kb on - strand, within MPMX19_03562 at 983.857 kb on - strand, within MPMX19_03562 at 983.857 kb on - strand, within MPMX19_03562 at 983.904 kb on + strand, within MPMX19_03562 at 983.904 kb on + strand, within MPMX19_03562 at 983.905 kb on - strand, within MPMX19_03562 at 983.905 kb on - strand, within MPMX19_03562 at 983.946 kb on + strand, within MPMX19_03562 at 983.947 kb on - strand, within MPMX19_03562 at 983.979 kb on + strand at 983.979 kb on + strand at 983.979 kb on + strand at 983.979 kb on + strand at 983.979 kb on + strand at 983.979 kb on + strand at 983.979 kb on + strand at 983.979 kb on + strand at 983.980 kb on - strand at 983.980 kb on - strand at 983.980 kb on - strand at 983.980 kb on - strand at 983.980 kb on - strand at 983.980 kb on - strand at 983.980 kb on - strand at 983.980 kb on - strand at 983.980 kb on - strand at 983.980 kb on - strand at 984.011 kb on + strand at 984.011 kb on + strand at 984.012 kb on - strand at 984.012 kb on - strand at 984.012 kb on - strand at 984.084 kb on + strand at 984.084 kb on + strand at 984.084 kb on + strand at 984.084 kb on + strand at 984.084 kb on + strand at 984.084 kb on + strand at 984.084 kb on + strand at 984.085 kb on - strand at 984.085 kb on - strand at 984.085 kb on - strand at 984.138 kb on + strand at 984.138 kb on + strand at 984.139 kb on - strand at 984.139 kb on - strand at 984.414 kb on + strand, within MPMX19_03563 at 984.550 kb on - strand, within MPMX19_03563 at 984.624 kb on + strand, within MPMX19_03563 at 984.624 kb on + strand, within MPMX19_03563 at 984.723 kb on + strand, within MPMX19_03563 at 984.723 kb on + strand, within MPMX19_03563 at 984.723 kb on + strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.724 kb on - strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.861 kb on + strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.862 kb on - strand, within MPMX19_03563 at 984.891 kb on + strand, within MPMX19_03563 at 984.891 kb on + strand, within MPMX19_03563 at 984.891 kb on + strand, within MPMX19_03563 at 984.891 kb on + strand, within MPMX19_03563 at 984.960 kb on + strand, within MPMX19_03563 at 984.961 kb on - strand, within MPMX19_03563 at 984.961 kb on - strand, within MPMX19_03563 at 984.961 kb on - strand, within MPMX19_03563 at 984.961 kb on - strand, within MPMX19_03563 at 985.148 kb on + strand at 985.149 kb on - strand at 985.198 kb on + strand at 985.198 kb on + strand at 985.199 kb on - strand at 985.199 kb on - strand at 985.519 kb on + strand, within MPMX19_03564 at 985.519 kb on + strand, within MPMX19_03564 at 985.520 kb on - strand, within MPMX19_03564 at 985.520 kb on - strand, within MPMX19_03564 at 985.520 kb on - strand, within MPMX19_03564 at 985.520 kb on - strand, within MPMX19_03564 at 985.520 kb on - strand, within MPMX19_03564 at 985.520 kb on - strand, within MPMX19_03564 at 985.582 kb on + strand, within MPMX19_03564 at 985.582 kb on + strand, within MPMX19_03564 at 985.583 kb on - strand, within MPMX19_03564 at 985.583 kb on - strand, within MPMX19_03564 at 985.633 kb on + strand, within MPMX19_03564 at 985.633 kb on + strand, within MPMX19_03564 at 985.633 kb on + strand, within MPMX19_03564 at 985.633 kb on + strand, within MPMX19_03564 at 985.634 kb on - strand, within MPMX19_03564 at 985.634 kb on - strand, within MPMX19_03564 at 985.634 kb on - strand, within MPMX19_03564 at 985.634 kb on - strand, within MPMX19_03564 at 985.634 kb on - strand, within MPMX19_03564 at 985.634 kb on - strand, within MPMX19_03564 at 985.721 kb on - strand, within MPMX19_03564 at 985.726 kb on + strand, within MPMX19_03564 at 985.726 kb on + strand, within MPMX19_03564 at 985.727 kb on - strand, within MPMX19_03564 at 985.727 kb on - strand, within MPMX19_03564 at 985.727 kb on - strand, within MPMX19_03564 at 985.727 kb on - strand, within MPMX19_03564 at 985.780 kb on + strand, within MPMX19_03564 at 985.780 kb on + strand, within MPMX19_03564 at 985.780 kb on + strand, within MPMX19_03564 at 985.780 kb on + strand, within MPMX19_03564 at 985.810 kb on + strand, within MPMX19_03564 at 985.810 kb on + strand, within MPMX19_03564 at 985.822 kb on + strand, within MPMX19_03564 at 985.924 kb on + strand, within MPMX19_03564 at 985.924 kb on + strand, within MPMX19_03564 at 985.924 kb on + strand, within MPMX19_03564 at 985.924 kb on + strand, within MPMX19_03564 at 985.924 kb on + strand, within MPMX19_03564 at 985.924 kb on + strand, within MPMX19_03564 at 985.925 kb on - strand, within MPMX19_03564 at 985.925 kb on - strand, within MPMX19_03564 at 985.925 kb on - strand, within MPMX19_03564 at 985.925 kb on - strand, within MPMX19_03564 at 985.925 kb on - strand, within MPMX19_03564 at 985.925 kb on - strand, within MPMX19_03564 at 985.988 kb on - strand, within MPMX19_03564 at 986.008 kb on + strand, within MPMX19_03564 at 986.008 kb on + strand, within MPMX19_03564 at 986.009 kb on - strand, within MPMX19_03564 at 986.009 kb on - strand, within MPMX19_03564 at 986.009 kb on - strand, within MPMX19_03564 at 986.009 kb on - strand, within MPMX19_03564 at 986.009 kb on - strand, within MPMX19_03564 at 986.017 kb on + strand, within MPMX19_03564 at 986.020 kb on + strand, within MPMX19_03564 at 986.020 kb on + strand, within MPMX19_03564 at 986.020 kb on + strand, within MPMX19_03564 at 986.021 kb on - strand, within MPMX19_03564 at 986.021 kb on - strand, within MPMX19_03564 at 986.056 kb on + strand, within MPMX19_03564 at 986.057 kb on - strand, within MPMX19_03564 at 986.057 kb on - strand, within MPMX19_03564 at 986.150 kb on - strand, within MPMX19_03564 at 986.150 kb on - strand, within MPMX19_03564 at 986.150 kb on - strand, within MPMX19_03564
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 983,253 + MPMX19_03562 0.29 -0.9 983,253 + MPMX19_03562 0.29 -0.6 983,253 + MPMX19_03562 0.29 -0.3 983,382 + MPMX19_03562 0.40 -0.9 983,382 + MPMX19_03562 0.40 -2.1 983,383 - MPMX19_03562 0.40 -0.3 983,383 - MPMX19_03562 0.40 -1.2 983,413 + MPMX19_03562 0.43 +0.7 983,413 + MPMX19_03562 0.43 +0.3 983,414 - MPMX19_03562 0.43 -0.6 983,414 - MPMX19_03562 0.43 -1.7 983,520 + MPMX19_03562 0.52 -0.1 983,520 + MPMX19_03562 0.52 -0.8 983,520 + MPMX19_03562 0.52 -1.3 983,520 + MPMX19_03562 0.52 -1.4 983,521 - MPMX19_03562 0.52 -1.1 983,521 - MPMX19_03562 0.52 +0.7 983,521 - MPMX19_03562 0.52 -0.7 983,521 - MPMX19_03562 0.52 +1.3 983,554 - MPMX19_03562 0.55 -0.3 983,595 + MPMX19_03562 0.59 -0.6 983,595 + MPMX19_03562 0.59 -2.3 983,595 + MPMX19_03562 0.59 -0.8 983,595 + MPMX19_03562 0.59 -1.4 983,595 + MPMX19_03562 0.59 +0.2 983,596 - MPMX19_03562 0.59 -2.0 983,596 - MPMX19_03562 0.59 -0.3 983,596 - MPMX19_03562 0.59 +1.3 983,596 - MPMX19_03562 0.59 +0.7 983,596 - MPMX19_03562 0.59 +1.0 983,637 + MPMX19_03562 0.63 +0.6 983,637 + MPMX19_03562 0.63 -0.5 983,637 + MPMX19_03562 0.63 -0.6 983,638 - MPMX19_03562 0.63 -1.7 983,638 - MPMX19_03562 0.63 -0.1 983,638 - MPMX19_03562 0.63 +0.1 983,776 - MPMX19_03562 0.75 -1.0 983,856 + MPMX19_03562 0.82 -2.1 983,856 + MPMX19_03562 0.82 -0.8 983,857 - MPMX19_03562 0.82 -1.1 983,857 - MPMX19_03562 0.82 +0.2 983,857 - MPMX19_03562 0.82 -0.4 983,857 - MPMX19_03562 0.82 -1.1 983,857 - MPMX19_03562 0.82 -0.7 983,904 + MPMX19_03562 0.86 -0.3 983,904 + MPMX19_03562 0.86 -1.1 983,905 - MPMX19_03562 0.86 -0.7 983,905 - MPMX19_03562 0.86 -1.4 983,946 + MPMX19_03562 0.90 -1.3 983,947 - MPMX19_03562 0.90 +1.0 983,979 + -0.1 983,979 + -0.6 983,979 + +2.4 983,979 + -1.9 983,979 + -0.8 983,979 + -0.6 983,979 + +0.4 983,979 + +0.8 983,980 - -0.5 983,980 - -0.3 983,980 - -0.1 983,980 - +1.4 983,980 - -0.6 983,980 - +0.0 983,980 - +0.0 983,980 - +0.4 983,980 - -0.9 983,980 - -2.7 984,011 + -0.8 984,011 + -0.5 984,012 - -0.3 984,012 - +0.3 984,012 - -0.1 984,084 + -0.1 984,084 + -1.6 984,084 + -0.4 984,084 + +0.9 984,084 + -0.6 984,084 + +0.0 984,084 + +0.8 984,085 - -0.6 984,085 - -0.5 984,085 - -0.9 984,138 + -0.8 984,138 + -0.1 984,139 - +0.3 984,139 - -1.3 984,414 + MPMX19_03563 0.29 -1.4 984,550 - MPMX19_03563 0.42 +0.8 984,624 + MPMX19_03563 0.49 -1.7 984,624 + MPMX19_03563 0.49 -2.7 984,723 + MPMX19_03563 0.58 -1.4 984,723 + MPMX19_03563 0.58 +2.0 984,723 + MPMX19_03563 0.58 -1.0 984,724 - MPMX19_03563 0.58 -1.0 984,724 - MPMX19_03563 0.58 +0.0 984,724 - MPMX19_03563 0.58 -0.6 984,724 - MPMX19_03563 0.58 +0.2 984,724 - MPMX19_03563 0.58 +0.1 984,724 - MPMX19_03563 0.58 -0.3 984,724 - MPMX19_03563 0.58 -0.1 984,724 - MPMX19_03563 0.58 -1.4 984,724 - MPMX19_03563 0.58 -0.2 984,724 - MPMX19_03563 0.58 +0.5 984,724 - MPMX19_03563 0.58 +0.3 984,724 - MPMX19_03563 0.58 -1.4 984,724 - MPMX19_03563 0.58 -0.4 984,861 + MPMX19_03563 0.71 -1.2 984,861 + MPMX19_03563 0.71 -0.0 984,861 + MPMX19_03563 0.71 -0.6 984,861 + MPMX19_03563 0.71 +0.1 984,861 + MPMX19_03563 0.71 -0.4 984,861 + MPMX19_03563 0.71 +0.4 984,861 + MPMX19_03563 0.71 -1.8 984,861 + MPMX19_03563 0.71 -0.3 984,861 + MPMX19_03563 0.71 -2.2 984,861 + MPMX19_03563 0.71 +0.4 984,861 + MPMX19_03563 0.71 -1.1 984,862 - MPMX19_03563 0.71 -1.4 984,862 - MPMX19_03563 0.71 -0.2 984,862 - MPMX19_03563 0.71 +0.4 984,862 - MPMX19_03563 0.71 +0.4 984,862 - MPMX19_03563 0.71 +0.2 984,862 - MPMX19_03563 0.71 -0.4 984,862 - MPMX19_03563 0.71 -0.4 984,862 - MPMX19_03563 0.71 -1.6 984,862 - MPMX19_03563 0.71 -1.0 984,891 + MPMX19_03563 0.74 -1.9 984,891 + MPMX19_03563 0.74 -0.6 984,891 + MPMX19_03563 0.74 -0.3 984,891 + MPMX19_03563 0.74 +0.2 984,960 + MPMX19_03563 0.81 -1.0 984,961 - MPMX19_03563 0.81 -0.7 984,961 - MPMX19_03563 0.81 +0.6 984,961 - MPMX19_03563 0.81 -2.7 984,961 - MPMX19_03563 0.81 -1.0 985,148 + -1.0 985,149 - -0.1 985,198 + +0.4 985,198 + -0.4 985,199 - -1.0 985,199 - -2.1 985,519 + MPMX19_03564 0.14 -1.0 985,519 + MPMX19_03564 0.14 +0.3 985,520 - MPMX19_03564 0.14 -0.2 985,520 - MPMX19_03564 0.14 -2.0 985,520 - MPMX19_03564 0.14 -1.6 985,520 - MPMX19_03564 0.14 -0.4 985,520 - MPMX19_03564 0.14 +0.0 985,520 - MPMX19_03564 0.14 -0.6 985,582 + MPMX19_03564 0.18 -1.2 985,582 + MPMX19_03564 0.18 +0.4 985,583 - MPMX19_03564 0.18 -1.0 985,583 - MPMX19_03564 0.18 -1.1 985,633 + MPMX19_03564 0.21 -0.4 985,633 + MPMX19_03564 0.21 +0.2 985,633 + MPMX19_03564 0.21 -0.1 985,633 + MPMX19_03564 0.21 +1.0 985,634 - MPMX19_03564 0.21 +0.0 985,634 - MPMX19_03564 0.21 +1.5 985,634 - MPMX19_03564 0.21 -1.1 985,634 - MPMX19_03564 0.21 -1.4 985,634 - MPMX19_03564 0.21 -0.9 985,634 - MPMX19_03564 0.21 -1.2 985,721 - MPMX19_03564 0.26 -1.7 985,726 + MPMX19_03564 0.27 -2.1 985,726 + MPMX19_03564 0.27 -0.3 985,727 - MPMX19_03564 0.27 +0.4 985,727 - MPMX19_03564 0.27 -2.2 985,727 - MPMX19_03564 0.27 -1.6 985,727 - MPMX19_03564 0.27 -1.1 985,780 + MPMX19_03564 0.30 +0.2 985,780 + MPMX19_03564 0.30 -0.6 985,780 + MPMX19_03564 0.30 +0.4 985,780 + MPMX19_03564 0.30 -1.1 985,810 + MPMX19_03564 0.32 +0.7 985,810 + MPMX19_03564 0.32 -0.5 985,822 + MPMX19_03564 0.32 -1.4 985,924 + MPMX19_03564 0.38 -0.4 985,924 + MPMX19_03564 0.38 -0.8 985,924 + MPMX19_03564 0.38 -0.6 985,924 + MPMX19_03564 0.38 -0.6 985,924 + MPMX19_03564 0.38 -0.7 985,924 + MPMX19_03564 0.38 +0.0 985,925 - MPMX19_03564 0.38 -1.3 985,925 - MPMX19_03564 0.38 +0.4 985,925 - MPMX19_03564 0.38 +0.3 985,925 - MPMX19_03564 0.38 -1.3 985,925 - MPMX19_03564 0.38 -1.4 985,925 - MPMX19_03564 0.38 -1.0 985,988 - MPMX19_03564 0.42 -0.7 986,008 + MPMX19_03564 0.43 -0.8 986,008 + MPMX19_03564 0.43 -2.8 986,009 - MPMX19_03564 0.44 -1.6 986,009 - MPMX19_03564 0.44 +1.3 986,009 - MPMX19_03564 0.44 -1.0 986,009 - MPMX19_03564 0.44 +0.4 986,009 - MPMX19_03564 0.44 -1.8 986,017 + MPMX19_03564 0.44 -0.7 986,020 + MPMX19_03564 0.44 +1.5 986,020 + MPMX19_03564 0.44 +0.4 986,020 + MPMX19_03564 0.44 +0.2 986,021 - MPMX19_03564 0.44 +0.2 986,021 - MPMX19_03564 0.44 +1.0 986,056 + MPMX19_03564 0.46 -1.1 986,057 - MPMX19_03564 0.46 -2.2 986,057 - MPMX19_03564 0.46 +0.7 986,150 - MPMX19_03564 0.52 +0.0 986,150 - MPMX19_03564 0.52 -1.0 986,150 - MPMX19_03564 0.52 +0.2
Or see this region's nucleotide sequence