Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03550

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03549 and MPMX19_03550 are separated by 8 nucleotidesMPMX19_03550 and MPMX19_03551 are separated by 51 nucleotides MPMX19_03549: MPMX19_03549 - HTH-type transcriptional regulator PgrR, at 970,050 to 970,958 _03549 MPMX19_03550: MPMX19_03550 - HTH-type transcriptional regulator DmlR, at 970,967 to 971,926 _03550 MPMX19_03551: MPMX19_03551 - NAD(P)H azoreductase, at 971,978 to 972,844 _03551 Position (kb) 970 971 972Strain fitness (log2 ratio) -2 -1 0 1 2at 970.035 kb on + strandat 970.044 kb on + strandat 970.063 kb on + strandat 970.063 kb on + strandat 970.064 kb on - strandat 970.064 kb on - strandat 970.064 kb on - strandat 970.064 kb on - strandat 970.205 kb on + strand, within MPMX19_03549at 970.205 kb on + strand, within MPMX19_03549at 970.205 kb on + strand, within MPMX19_03549at 970.206 kb on - strand, within MPMX19_03549at 970.206 kb on - strand, within MPMX19_03549at 970.206 kb on - strand, within MPMX19_03549at 970.206 kb on - strand, within MPMX19_03549at 970.405 kb on - strand, within MPMX19_03549at 970.567 kb on - strand, within MPMX19_03549at 970.567 kb on - strand, within MPMX19_03549at 970.567 kb on - strand, within MPMX19_03549at 970.657 kb on - strand, within MPMX19_03549at 970.800 kb on + strand, within MPMX19_03549at 970.869 kb on + strandat 970.870 kb on - strandat 970.870 kb on - strandat 970.870 kb on - strandat 970.980 kb on + strandat 970.980 kb on + strandat 970.981 kb on - strandat 970.981 kb on - strandat 970.981 kb on - strandat 971.076 kb on + strand, within MPMX19_03550at 971.076 kb on + strand, within MPMX19_03550at 971.252 kb on - strand, within MPMX19_03550at 971.460 kb on + strand, within MPMX19_03550at 971.460 kb on + strand, within MPMX19_03550at 971.460 kb on + strand, within MPMX19_03550at 971.460 kb on + strand, within MPMX19_03550at 971.460 kb on + strand, within MPMX19_03550at 971.460 kb on + strand, within MPMX19_03550at 971.460 kb on + strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.461 kb on - strand, within MPMX19_03550at 971.523 kb on + strand, within MPMX19_03550at 971.523 kb on + strand, within MPMX19_03550at 971.523 kb on + strand, within MPMX19_03550at 971.524 kb on - strand, within MPMX19_03550at 972.148 kb on + strand, within MPMX19_03551at 972.148 kb on + strand, within MPMX19_03551at 972.266 kb on + strand, within MPMX19_03551at 972.267 kb on - strand, within MPMX19_03551at 972.267 kb on - strand, within MPMX19_03551at 972.267 kb on - strand, within MPMX19_03551at 972.267 kb on - strand, within MPMX19_03551at 972.383 kb on + strand, within MPMX19_03551at 972.383 kb on + strand, within MPMX19_03551at 972.383 kb on + strand, within MPMX19_03551at 972.384 kb on - strand, within MPMX19_03551at 972.384 kb on - strand, within MPMX19_03551at 972.438 kb on - strand, within MPMX19_03551at 972.438 kb on - strand, within MPMX19_03551at 972.638 kb on + strand, within MPMX19_03551at 972.638 kb on + strand, within MPMX19_03551at 972.638 kb on + strand, within MPMX19_03551at 972.638 kb on + strand, within MPMX19_03551at 972.639 kb on - strand, within MPMX19_03551at 972.639 kb on - strand, within MPMX19_03551at 972.639 kb on - strand, within MPMX19_03551at 972.639 kb on - strand, within MPMX19_03551at 972.639 kb on - strand, within MPMX19_03551at 972.704 kb on + strand, within MPMX19_03551at 972.704 kb on + strand, within MPMX19_03551at 972.704 kb on + strand, within MPMX19_03551at 972.731 kb on + strand, within MPMX19_03551at 972.731 kb on + strand, within MPMX19_03551at 972.731 kb on + strand, within MPMX19_03551at 972.809 kb on + strandat 972.809 kb on + strandat 972.809 kb on + strandat 972.809 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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970,035 + -0.7
970,044 + -1.1
970,063 + -0.4
970,063 + -2.1
970,064 - -1.3
970,064 - -0.5
970,064 - -1.2
970,064 - -1.4
970,205 + MPMX19_03549 0.17 -0.6
970,205 + MPMX19_03549 0.17 +2.0
970,205 + MPMX19_03549 0.17 -0.3
970,206 - MPMX19_03549 0.17 +0.2
970,206 - MPMX19_03549 0.17 -0.4
970,206 - MPMX19_03549 0.17 -0.4
970,206 - MPMX19_03549 0.17 +1.3
970,405 - MPMX19_03549 0.39 -1.3
970,567 - MPMX19_03549 0.57 -1.1
970,567 - MPMX19_03549 0.57 +2.0
970,567 - MPMX19_03549 0.57 +0.0
970,657 - MPMX19_03549 0.67 -0.4
970,800 + MPMX19_03549 0.83 -0.0
970,869 + -0.8
970,870 - +0.2
970,870 - -0.8
970,870 - +1.0
970,980 + -0.3
970,980 + +1.0
970,981 - -0.1
970,981 - +1.6
970,981 - +1.3
971,076 + MPMX19_03550 0.11 -1.5
971,076 + MPMX19_03550 0.11 -0.8
971,252 - MPMX19_03550 0.30 +0.3
971,460 + MPMX19_03550 0.51 +0.9
971,460 + MPMX19_03550 0.51 -1.0
971,460 + MPMX19_03550 0.51 -0.3
971,460 + MPMX19_03550 0.51 -0.8
971,460 + MPMX19_03550 0.51 +0.2
971,460 + MPMX19_03550 0.51 +0.0
971,460 + MPMX19_03550 0.51 +0.1
971,461 - MPMX19_03550 0.51 -1.4
971,461 - MPMX19_03550 0.51 +0.0
971,461 - MPMX19_03550 0.51 -1.5
971,461 - MPMX19_03550 0.51 -0.2
971,461 - MPMX19_03550 0.51 +0.4
971,461 - MPMX19_03550 0.51 +0.6
971,461 - MPMX19_03550 0.51 +1.5
971,461 - MPMX19_03550 0.51 -1.0
971,461 - MPMX19_03550 0.51 -0.8
971,523 + MPMX19_03550 0.58 -0.8
971,523 + MPMX19_03550 0.58 +0.6
971,523 + MPMX19_03550 0.58 -0.1
971,524 - MPMX19_03550 0.58 -1.2
972,148 + MPMX19_03551 0.20 +0.4
972,148 + MPMX19_03551 0.20 +1.0
972,266 + MPMX19_03551 0.33 +0.0
972,267 - MPMX19_03551 0.33 +0.6
972,267 - MPMX19_03551 0.33 -1.3
972,267 - MPMX19_03551 0.33 -0.9
972,267 - MPMX19_03551 0.33 -0.4
972,383 + MPMX19_03551 0.47 -0.1
972,383 + MPMX19_03551 0.47 -1.4
972,383 + MPMX19_03551 0.47 -1.1
972,384 - MPMX19_03551 0.47 -2.4
972,384 - MPMX19_03551 0.47 -0.8
972,438 - MPMX19_03551 0.53 -1.8
972,438 - MPMX19_03551 0.53 +0.0
972,638 + MPMX19_03551 0.76 -0.5
972,638 + MPMX19_03551 0.76 -0.5
972,638 + MPMX19_03551 0.76 +0.1
972,638 + MPMX19_03551 0.76 +1.8
972,639 - MPMX19_03551 0.76 -0.3
972,639 - MPMX19_03551 0.76 +0.2
972,639 - MPMX19_03551 0.76 -0.5
972,639 - MPMX19_03551 0.76 +0.4
972,639 - MPMX19_03551 0.76 +0.8
972,704 + MPMX19_03551 0.84 -0.9
972,704 + MPMX19_03551 0.84 -0.8
972,704 + MPMX19_03551 0.84 -2.4
972,731 + MPMX19_03551 0.87 -0.2
972,731 + MPMX19_03551 0.87 -1.4
972,731 + MPMX19_03551 0.87 -0.1
972,809 + -0.9
972,809 + -1.0
972,809 + -0.9
972,809 + +0.4

Or see this region's nucleotide sequence