Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03547

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03546 and MPMX19_03547 are separated by 160 nucleotidesMPMX19_03547 and MPMX19_03548 are separated by 62 nucleotidesMPMX19_03548 and MPMX19_03549 are separated by 123 nucleotides MPMX19_03546: MPMX19_03546 - Succinyl-diaminopimelate desuccinylase, at 966,678 to 968,225 _03546 MPMX19_03547: MPMX19_03547 - putative oxidoreductase, at 968,386 to 969,111 _03547 MPMX19_03548: MPMX19_03548 - Dihydroanticapsin 7-dehydrogenase, at 969,174 to 969,926 _03548 MPMX19_03549: MPMX19_03549 - HTH-type transcriptional regulator PgrR, at 970,050 to 970,958 _03549 Position (kb) 968 969 970Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.423 kb on + strand, within MPMX19_03546at 967.424 kb on - strand, within MPMX19_03546at 967.777 kb on + strand, within MPMX19_03546at 967.777 kb on + strand, within MPMX19_03546at 967.777 kb on + strand, within MPMX19_03546at 967.777 kb on + strand, within MPMX19_03546at 967.777 kb on + strand, within MPMX19_03546at 967.778 kb on - strand, within MPMX19_03546at 967.778 kb on - strand, within MPMX19_03546at 967.778 kb on - strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.900 kb on + strand, within MPMX19_03546at 967.901 kb on - strand, within MPMX19_03546at 967.901 kb on - strand, within MPMX19_03546at 967.901 kb on - strand, within MPMX19_03546at 967.901 kb on - strand, within MPMX19_03546at 967.901 kb on - strand, within MPMX19_03546at 968.095 kb on + strandat 968.126 kb on + strandat 968.237 kb on + strandat 968.237 kb on + strandat 968.252 kb on + strandat 968.502 kb on - strand, within MPMX19_03547at 968.573 kb on + strand, within MPMX19_03547at 968.573 kb on + strand, within MPMX19_03547at 968.574 kb on - strand, within MPMX19_03547at 968.574 kb on - strand, within MPMX19_03547at 968.574 kb on - strand, within MPMX19_03547at 968.574 kb on - strand, within MPMX19_03547at 968.654 kb on + strand, within MPMX19_03547at 968.654 kb on + strand, within MPMX19_03547at 968.655 kb on - strand, within MPMX19_03547at 968.655 kb on - strand, within MPMX19_03547at 968.655 kb on - strand, within MPMX19_03547at 968.711 kb on + strand, within MPMX19_03547at 968.711 kb on + strand, within MPMX19_03547at 968.712 kb on - strand, within MPMX19_03547at 968.712 kb on - strand, within MPMX19_03547at 968.712 kb on - strand, within MPMX19_03547at 968.712 kb on - strand, within MPMX19_03547at 968.712 kb on - strand, within MPMX19_03547at 969.124 kb on + strandat 969.124 kb on + strandat 969.125 kb on - strandat 969.137 kb on - strandat 969.137 kb on - strandat 969.188 kb on - strandat 969.412 kb on + strand, within MPMX19_03548at 969.413 kb on - strand, within MPMX19_03548at 969.413 kb on - strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.466 kb on + strand, within MPMX19_03548at 969.467 kb on - strand, within MPMX19_03548at 969.467 kb on - strand, within MPMX19_03548at 969.467 kb on - strand, within MPMX19_03548at 969.467 kb on - strand, within MPMX19_03548at 969.467 kb on - strand, within MPMX19_03548at 969.610 kb on + strand, within MPMX19_03548at 969.610 kb on + strand, within MPMX19_03548at 969.610 kb on + strand, within MPMX19_03548at 969.610 kb on + strand, within MPMX19_03548at 969.610 kb on + strand, within MPMX19_03548at 969.611 kb on - strand, within MPMX19_03548at 969.611 kb on - strand, within MPMX19_03548at 969.611 kb on - strand, within MPMX19_03548at 969.611 kb on - strand, within MPMX19_03548at 969.611 kb on - strand, within MPMX19_03548at 969.904 kb on + strandat 969.904 kb on + strandat 969.904 kb on + strandat 969.904 kb on + strandat 969.904 kb on + strandat 969.904 kb on + strandat 969.904 kb on + strandat 969.905 kb on - strandat 969.905 kb on - strandat 969.905 kb on - strandat 969.905 kb on - strandat 969.905 kb on - strandat 969.905 kb on - strandat 969.957 kb on + strandat 969.958 kb on - strandat 969.958 kb on - strandat 969.958 kb on - strandat 970.035 kb on + strandat 970.044 kb on + strandat 970.063 kb on + strandat 970.063 kb on + strandat 970.064 kb on - strandat 970.064 kb on - strandat 970.064 kb on - strandat 970.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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967,423 + MPMX19_03546 0.48 -0.2
967,423 + MPMX19_03546 0.48 -0.4
967,423 + MPMX19_03546 0.48 -0.2
967,423 + MPMX19_03546 0.48 -0.8
967,423 + MPMX19_03546 0.48 -0.5
967,423 + MPMX19_03546 0.48 -1.9
967,423 + MPMX19_03546 0.48 -1.4
967,423 + MPMX19_03546 0.48 +0.8
967,424 - MPMX19_03546 0.48 -1.9
967,777 + MPMX19_03546 0.71 -1.3
967,777 + MPMX19_03546 0.71 -0.4
967,777 + MPMX19_03546 0.71 -2.0
967,777 + MPMX19_03546 0.71 -1.0
967,777 + MPMX19_03546 0.71 -0.7
967,778 - MPMX19_03546 0.71 -0.4
967,778 - MPMX19_03546 0.71 -1.1
967,778 - MPMX19_03546 0.71 -0.4
967,900 + MPMX19_03546 0.79 -0.3
967,900 + MPMX19_03546 0.79 -1.7
967,900 + MPMX19_03546 0.79 +1.4
967,900 + MPMX19_03546 0.79 +0.7
967,900 + MPMX19_03546 0.79 -0.2
967,900 + MPMX19_03546 0.79 -0.1
967,900 + MPMX19_03546 0.79 +0.3
967,900 + MPMX19_03546 0.79 -0.2
967,900 + MPMX19_03546 0.79 -1.6
967,900 + MPMX19_03546 0.79 -0.3
967,901 - MPMX19_03546 0.79 +0.0
967,901 - MPMX19_03546 0.79 -1.3
967,901 - MPMX19_03546 0.79 +3.4
967,901 - MPMX19_03546 0.79 -0.6
967,901 - MPMX19_03546 0.79 -1.5
968,095 + -0.4
968,126 + +0.8
968,237 + -1.0
968,237 + -1.2
968,252 + -1.1
968,502 - MPMX19_03547 0.16 +0.0
968,573 + MPMX19_03547 0.26 +0.4
968,573 + MPMX19_03547 0.26 -0.4
968,574 - MPMX19_03547 0.26 -0.6
968,574 - MPMX19_03547 0.26 -0.6
968,574 - MPMX19_03547 0.26 +0.6
968,574 - MPMX19_03547 0.26 -0.3
968,654 + MPMX19_03547 0.37 -0.6
968,654 + MPMX19_03547 0.37 +2.0
968,655 - MPMX19_03547 0.37 -1.3
968,655 - MPMX19_03547 0.37 -0.7
968,655 - MPMX19_03547 0.37 +1.4
968,711 + MPMX19_03547 0.45 -0.3
968,711 + MPMX19_03547 0.45 -1.0
968,712 - MPMX19_03547 0.45 -1.0
968,712 - MPMX19_03547 0.45 -0.2
968,712 - MPMX19_03547 0.45 -0.2
968,712 - MPMX19_03547 0.45 +0.0
968,712 - MPMX19_03547 0.45 -0.3
969,124 + -1.4
969,124 + +0.6
969,125 - -1.6
969,137 - -1.2
969,137 - +0.2
969,188 - -1.1
969,412 + MPMX19_03548 0.32 -3.1
969,413 - MPMX19_03548 0.32 +0.6
969,413 - MPMX19_03548 0.32 -1.0
969,466 + MPMX19_03548 0.39 -0.9
969,466 + MPMX19_03548 0.39 +1.1
969,466 + MPMX19_03548 0.39 +0.2
969,466 + MPMX19_03548 0.39 -0.8
969,466 + MPMX19_03548 0.39 +1.3
969,466 + MPMX19_03548 0.39 +0.4
969,466 + MPMX19_03548 0.39 +0.0
969,466 + MPMX19_03548 0.39 -0.2
969,466 + MPMX19_03548 0.39 +1.0
969,466 + MPMX19_03548 0.39 -1.1
969,466 + MPMX19_03548 0.39 -0.8
969,466 + MPMX19_03548 0.39 -0.6
969,466 + MPMX19_03548 0.39 +0.2
969,466 + MPMX19_03548 0.39 -1.2
969,467 - MPMX19_03548 0.39 +0.4
969,467 - MPMX19_03548 0.39 -1.8
969,467 - MPMX19_03548 0.39 +0.0
969,467 - MPMX19_03548 0.39 -1.7
969,467 - MPMX19_03548 0.39 -0.2
969,610 + MPMX19_03548 0.58 -0.9
969,610 + MPMX19_03548 0.58 -1.0
969,610 + MPMX19_03548 0.58 -0.1
969,610 + MPMX19_03548 0.58 -0.7
969,610 + MPMX19_03548 0.58 +0.7
969,611 - MPMX19_03548 0.58 +0.1
969,611 - MPMX19_03548 0.58 -1.7
969,611 - MPMX19_03548 0.58 -0.7
969,611 - MPMX19_03548 0.58 +1.0
969,611 - MPMX19_03548 0.58 +0.6
969,904 + -0.1
969,904 + -0.2
969,904 + -0.8
969,904 + -0.8
969,904 + +1.0
969,904 + -2.3
969,904 + +1.2
969,905 - -1.1
969,905 - -1.1
969,905 - -0.6
969,905 - -0.5
969,905 - -2.6
969,905 - -1.6
969,957 + -1.1
969,958 - -1.7
969,958 - -0.7
969,958 - -0.6
970,035 + -0.7
970,044 + -1.1
970,063 + -0.4
970,063 + -2.1
970,064 - -1.3
970,064 - -0.5
970,064 - -1.2
970,064 - -1.4

Or see this region's nucleotide sequence