Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03535

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03533 and MPMX19_03534 are separated by 32 nucleotidesMPMX19_03534 and MPMX19_03535 overlap by 4 nucleotidesMPMX19_03535 and MPMX19_03536 overlap by 8 nucleotidesMPMX19_03536 and MPMX19_03537 overlap by 1 nucleotides MPMX19_03533: MPMX19_03533 - hypothetical protein, at 952,366 to 953,562 _03533 MPMX19_03534: MPMX19_03534 - High-affinity branched-chain amino acid transport system permease protein LivH, at 953,595 to 954,527 _03534 MPMX19_03535: MPMX19_03535 - hypothetical protein, at 954,524 to 955,513 _03535 MPMX19_03536: MPMX19_03536 - Lipopolysaccharide export system ATP-binding protein LptB, at 955,506 to 956,261 _03536 MPMX19_03537: MPMX19_03537 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 956,261 to 956,962 _03537 Position (kb) 954 955 956Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 953.536 kb on + strandat 953.537 kb on - strandat 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.736 kb on + strand, within MPMX19_03534at 953.736 kb on + strand, within MPMX19_03534at 953.736 kb on + strand, within MPMX19_03534at 953.736 kb on + strand, within MPMX19_03534at 953.736 kb on + strand, within MPMX19_03534at 953.737 kb on - strand, within MPMX19_03534at 953.737 kb on - strand, within MPMX19_03534at 953.737 kb on - strand, within MPMX19_03534at 953.737 kb on - strand, within MPMX19_03534at 953.737 kb on - strand, within MPMX19_03534at 954.018 kb on + strand, within MPMX19_03534at 954.018 kb on + strand, within MPMX19_03534at 954.027 kb on + strand, within MPMX19_03534at 954.027 kb on + strand, within MPMX19_03534at 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.746 kb on + strand, within MPMX19_03535at 954.747 kb on - strand, within MPMX19_03535at 954.827 kb on + strand, within MPMX19_03535at 954.827 kb on + strand, within MPMX19_03535at 954.827 kb on + strand, within MPMX19_03535at 954.828 kb on - strand, within MPMX19_03535at 954.957 kb on - strand, within MPMX19_03535at 954.965 kb on + strand, within MPMX19_03535at 954.965 kb on + strand, within MPMX19_03535at 954.965 kb on + strand, within MPMX19_03535at 954.965 kb on + strand, within MPMX19_03535at 954.965 kb on + strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 955.151 kb on + strand, within MPMX19_03535at 955.158 kb on - strand, within MPMX19_03535at 955.172 kb on + strand, within MPMX19_03535at 955.172 kb on + strand, within MPMX19_03535at 955.173 kb on - strand, within MPMX19_03535at 955.379 kb on + strand, within MPMX19_03535at 955.912 kb on + strand, within MPMX19_03536at 955.912 kb on + strand, within MPMX19_03536at 955.912 kb on + strand, within MPMX19_03536at 955.912 kb on + strand, within MPMX19_03536at 955.912 kb on + strand, within MPMX19_03536at 955.913 kb on - strand, within MPMX19_03536at 955.913 kb on - strand, within MPMX19_03536at 955.913 kb on - strand, within MPMX19_03536at 956.169 kb on + strand, within MPMX19_03536at 956.169 kb on + strand, within MPMX19_03536at 956.169 kb on + strand, within MPMX19_03536at 956.169 kb on + strand, within MPMX19_03536at 956.170 kb on - strand, within MPMX19_03536at 956.170 kb on - strand, within MPMX19_03536at 956.170 kb on - strand, within MPMX19_03536at 956.235 kb on + strandat 956.235 kb on + strandat 956.235 kb on + strandat 956.235 kb on + strandat 956.236 kb on - strandat 956.291 kb on + strandat 956.292 kb on - strandat 956.400 kb on + strand, within MPMX19_03537at 956.401 kb on - strand, within MPMX19_03537at 956.401 kb on - strand, within MPMX19_03537at 956.401 kb on - strand, within MPMX19_03537

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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953,536 + +1.0
953,537 - -0.9
953,721 + MPMX19_03534 0.14 +0.1
953,721 + MPMX19_03534 0.14 +1.2
953,721 + MPMX19_03534 0.14 -0.8
953,721 + MPMX19_03534 0.14 -1.2
953,721 + MPMX19_03534 0.14 +0.0
953,721 + MPMX19_03534 0.14 +0.1
953,721 + MPMX19_03534 0.14 -1.6
953,721 + MPMX19_03534 0.14 -1.4
953,721 + MPMX19_03534 0.14 +0.4
953,721 + MPMX19_03534 0.14 -0.6
953,721 + MPMX19_03534 0.14 -0.7
953,721 + MPMX19_03534 0.14 +1.2
953,721 + MPMX19_03534 0.14 +1.0
953,722 - MPMX19_03534 0.14 +0.1
953,722 - MPMX19_03534 0.14 -0.5
953,722 - MPMX19_03534 0.14 -2.8
953,722 - MPMX19_03534 0.14 +1.4
953,722 - MPMX19_03534 0.14 -0.8
953,722 - MPMX19_03534 0.14 -0.6
953,722 - MPMX19_03534 0.14 +1.6
953,722 - MPMX19_03534 0.14 -0.3
953,722 - MPMX19_03534 0.14 -0.6
953,736 + MPMX19_03534 0.15 +0.0
953,736 + MPMX19_03534 0.15 +0.1
953,736 + MPMX19_03534 0.15 -1.4
953,736 + MPMX19_03534 0.15 -1.2
953,736 + MPMX19_03534 0.15 +1.0
953,737 - MPMX19_03534 0.15 +0.3
953,737 - MPMX19_03534 0.15 -0.3
953,737 - MPMX19_03534 0.15 -0.3
953,737 - MPMX19_03534 0.15 -1.6
953,737 - MPMX19_03534 0.15 -0.6
954,018 + MPMX19_03534 0.45 -0.2
954,018 + MPMX19_03534 0.45 +0.0
954,027 + MPMX19_03534 0.46 -1.8
954,027 + MPMX19_03534 0.46 -0.2
954,459 + -1.0
954,459 + -2.0
954,459 + -0.4
954,459 + -0.4
954,459 + -0.0
954,459 + +0.4
954,459 + +1.5
954,459 + +0.7
954,460 - -1.6
954,460 - -1.2
954,460 - -1.0
954,460 - -0.2
954,460 - +0.1
954,460 - +0.0
954,460 - -0.3
954,460 - -2.0
954,460 - -1.2
954,746 + MPMX19_03535 0.22 -1.4
954,747 - MPMX19_03535 0.23 -2.6
954,827 + MPMX19_03535 0.31 -1.8
954,827 + MPMX19_03535 0.31 +1.4
954,827 + MPMX19_03535 0.31 -0.9
954,828 - MPMX19_03535 0.31 +0.7
954,957 - MPMX19_03535 0.44 -0.6
954,965 + MPMX19_03535 0.45 -1.4
954,965 + MPMX19_03535 0.45 -0.6
954,965 + MPMX19_03535 0.45 -1.6
954,965 + MPMX19_03535 0.45 -0.3
954,965 + MPMX19_03535 0.45 -1.3
954,966 - MPMX19_03535 0.45 -0.6
954,966 - MPMX19_03535 0.45 -1.2
954,966 - MPMX19_03535 0.45 -0.2
954,966 - MPMX19_03535 0.45 -1.1
954,966 - MPMX19_03535 0.45 -0.7
954,966 - MPMX19_03535 0.45 -0.6
954,966 - MPMX19_03535 0.45 -0.4
954,966 - MPMX19_03535 0.45 -0.1
954,966 - MPMX19_03535 0.45 -2.0
955,151 + MPMX19_03535 0.63 -0.4
955,158 - MPMX19_03535 0.64 -1.3
955,172 + MPMX19_03535 0.65 -1.2
955,172 + MPMX19_03535 0.65 -0.2
955,173 - MPMX19_03535 0.66 -1.2
955,379 + MPMX19_03535 0.86 +0.0
955,912 + MPMX19_03536 0.54 +0.7
955,912 + MPMX19_03536 0.54 -0.3
955,912 + MPMX19_03536 0.54 -0.2
955,912 + MPMX19_03536 0.54 -1.0
955,912 + MPMX19_03536 0.54 -1.0
955,913 - MPMX19_03536 0.54 +1.2
955,913 - MPMX19_03536 0.54 -1.0
955,913 - MPMX19_03536 0.54 -0.8
956,169 + MPMX19_03536 0.88 -1.3
956,169 + MPMX19_03536 0.88 +0.1
956,169 + MPMX19_03536 0.88 -1.0
956,169 + MPMX19_03536 0.88 +0.6
956,170 - MPMX19_03536 0.88 +2.0
956,170 - MPMX19_03536 0.88 -0.4
956,170 - MPMX19_03536 0.88 -0.9
956,235 + +1.3
956,235 + -2.0
956,235 + -0.1
956,235 + -1.7
956,236 - -0.9
956,291 + -1.3
956,292 - -1.0
956,400 + MPMX19_03537 0.20 -0.3
956,401 - MPMX19_03537 0.20 +1.0
956,401 - MPMX19_03537 0.20 -1.8
956,401 - MPMX19_03537 0.20 -0.7

Or see this region's nucleotide sequence