Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03528

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03526 and MPMX19_03527 are separated by 57 nucleotidesMPMX19_03527 and MPMX19_03528 are separated by 12 nucleotidesMPMX19_03528 and MPMX19_03529 are separated by 35 nucleotides MPMX19_03526: MPMX19_03526 - Quinate/shikimate dehydrogenase (NAD(+)), at 945,802 to 946,704 _03526 MPMX19_03527: MPMX19_03527 - hypothetical protein, at 946,762 to 947,388 _03527 MPMX19_03528: MPMX19_03528 - Sialic acid TRAP transporter large permease protein SiaM, at 947,401 to 948,681 _03528 MPMX19_03529: MPMX19_03529 - 2,3-diketo-L-gulonate-binding periplasmic protein YiaO, at 948,717 to 949,736 _03529 Position (kb) 947 948 949Strain fitness (log2 ratio) -3 -2 -1 0 1at 946.519 kb on + strand, within MPMX19_03526at 946.519 kb on + strand, within MPMX19_03526at 946.520 kb on - strand, within MPMX19_03526at 946.520 kb on - strand, within MPMX19_03526at 946.705 kb on + strandat 946.706 kb on - strandat 946.722 kb on + strandat 946.722 kb on + strandat 946.723 kb on - strandat 946.723 kb on - strandat 946.723 kb on - strandat 946.723 kb on - strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.783 kb on + strandat 946.783 kb on + strandat 946.783 kb on + strandat 946.783 kb on + strandat 946.783 kb on + strandat 946.783 kb on + strandat 946.784 kb on - strandat 946.784 kb on - strandat 946.865 kb on - strand, within MPMX19_03527at 946.981 kb on - strand, within MPMX19_03527at 947.147 kb on - strand, within MPMX19_03527at 947.203 kb on + strand, within MPMX19_03527at 947.203 kb on + strand, within MPMX19_03527at 947.203 kb on + strand, within MPMX19_03527at 947.203 kb on + strand, within MPMX19_03527at 947.203 kb on + strand, within MPMX19_03527at 947.203 kb on + strand, within MPMX19_03527at 947.204 kb on - strand, within MPMX19_03527at 947.204 kb on - strand, within MPMX19_03527at 947.204 kb on - strand, within MPMX19_03527at 947.204 kb on - strand, within MPMX19_03527at 947.204 kb on - strand, within MPMX19_03527at 947.204 kb on - strand, within MPMX19_03527at 947.349 kb on + strandat 947.349 kb on + strandat 947.350 kb on - strandat 947.350 kb on - strandat 947.464 kb on + strandat 947.465 kb on - strandat 947.683 kb on + strand, within MPMX19_03528at 947.684 kb on - strand, within MPMX19_03528at 947.684 kb on - strand, within MPMX19_03528at 947.875 kb on + strand, within MPMX19_03528at 947.875 kb on + strand, within MPMX19_03528at 947.875 kb on + strand, within MPMX19_03528at 947.875 kb on + strand, within MPMX19_03528at 947.875 kb on + strand, within MPMX19_03528at 947.875 kb on + strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 948.139 kb on + strand, within MPMX19_03528at 948.140 kb on - strand, within MPMX19_03528at 948.166 kb on + strand, within MPMX19_03528at 948.166 kb on + strand, within MPMX19_03528at 948.167 kb on - strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.204 kb on - strand, within MPMX19_03528at 948.466 kb on + strand, within MPMX19_03528at 948.466 kb on + strand, within MPMX19_03528at 948.466 kb on + strand, within MPMX19_03528at 948.466 kb on + strand, within MPMX19_03528at 948.467 kb on - strand, within MPMX19_03528at 948.467 kb on - strand, within MPMX19_03528at 948.467 kb on - strand, within MPMX19_03528at 948.467 kb on - strand, within MPMX19_03528at 948.798 kb on + strandat 948.798 kb on + strandat 948.798 kb on + strandat 948.799 kb on - strandat 948.799 kb on - strandat 948.799 kb on - strandat 948.967 kb on + strand, within MPMX19_03529at 948.967 kb on + strand, within MPMX19_03529at 948.967 kb on + strand, within MPMX19_03529at 949.257 kb on + strand, within MPMX19_03529at 949.257 kb on + strand, within MPMX19_03529at 949.257 kb on + strand, within MPMX19_03529at 949.257 kb on + strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.317 kb on + strand, within MPMX19_03529at 949.317 kb on + strand, within MPMX19_03529at 949.318 kb on - strand, within MPMX19_03529at 949.318 kb on - strand, within MPMX19_03529at 949.404 kb on + strand, within MPMX19_03529at 949.404 kb on + strand, within MPMX19_03529at 949.404 kb on + strand, within MPMX19_03529at 949.405 kb on - strand, within MPMX19_03529at 949.428 kb on + strand, within MPMX19_03529at 949.429 kb on - strand, within MPMX19_03529at 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.663 kb on - strandat 949.663 kb on - strandat 949.663 kb on - strandat 949.663 kb on - strandat 949.663 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
946,519 + MPMX19_03526 0.79 +0.1
946,519 + MPMX19_03526 0.79 -3.1
946,520 - MPMX19_03526 0.80 -0.8
946,520 - MPMX19_03526 0.80 -0.7
946,705 + +0.4
946,706 - -1.6
946,722 + -0.1
946,722 + -0.4
946,723 - +0.4
946,723 - +0.2
946,723 - -1.5
946,723 - -0.1
946,728 + -1.6
946,728 + +0.4
946,728 + -0.8
946,728 + -0.1
946,728 + -0.1
946,728 + +0.2
946,728 + +0.2
946,728 + -0.1
946,728 + +0.3
946,728 + -0.8
946,728 + -0.7
946,729 - -0.8
946,729 - +0.4
946,729 - -1.2
946,729 - -0.1
946,729 - -1.0
946,729 - -0.6
946,729 - -1.6
946,729 - -0.4
946,729 - -0.3
946,729 - -1.1
946,783 + +1.2
946,783 + -0.1
946,783 + -0.0
946,783 + -0.4
946,783 + +0.4
946,783 + -1.0
946,784 - -0.8
946,784 - -0.6
946,865 - MPMX19_03527 0.16 +0.2
946,981 - MPMX19_03527 0.35 +0.7
947,147 - MPMX19_03527 0.61 -1.3
947,203 + MPMX19_03527 0.70 +0.4
947,203 + MPMX19_03527 0.70 +0.3
947,203 + MPMX19_03527 0.70 +0.4
947,203 + MPMX19_03527 0.70 +0.4
947,203 + MPMX19_03527 0.70 -0.6
947,203 + MPMX19_03527 0.70 -0.8
947,204 - MPMX19_03527 0.70 -0.1
947,204 - MPMX19_03527 0.70 +1.0
947,204 - MPMX19_03527 0.70 -1.1
947,204 - MPMX19_03527 0.70 -0.4
947,204 - MPMX19_03527 0.70 -0.4
947,204 - MPMX19_03527 0.70 +0.3
947,349 + +0.1
947,349 + -0.1
947,350 - -0.4
947,350 - +0.6
947,464 + +1.3
947,465 - -1.0
947,683 + MPMX19_03528 0.22 -0.8
947,684 - MPMX19_03528 0.22 -0.1
947,684 - MPMX19_03528 0.22 -0.1
947,875 + MPMX19_03528 0.37 -0.3
947,875 + MPMX19_03528 0.37 -1.1
947,875 + MPMX19_03528 0.37 -0.3
947,875 + MPMX19_03528 0.37 -2.1
947,875 + MPMX19_03528 0.37 -0.6
947,875 + MPMX19_03528 0.37 -1.3
947,876 - MPMX19_03528 0.37 -0.3
947,876 - MPMX19_03528 0.37 -0.6
947,876 - MPMX19_03528 0.37 -0.7
947,876 - MPMX19_03528 0.37 -1.3
947,876 - MPMX19_03528 0.37 -0.1
947,876 - MPMX19_03528 0.37 -0.3
947,876 - MPMX19_03528 0.37 -0.3
947,971 + MPMX19_03528 0.44 -1.0
947,971 + MPMX19_03528 0.44 -1.0
947,971 + MPMX19_03528 0.44 +0.6
947,971 + MPMX19_03528 0.44 -0.6
947,971 + MPMX19_03528 0.44 -1.6
947,971 + MPMX19_03528 0.44 -0.8
947,971 + MPMX19_03528 0.44 -0.2
947,971 + MPMX19_03528 0.44 -0.6
947,971 + MPMX19_03528 0.44 +0.0
947,972 - MPMX19_03528 0.45 +0.2
947,972 - MPMX19_03528 0.45 +1.3
947,972 - MPMX19_03528 0.45 -1.6
947,972 - MPMX19_03528 0.45 -0.4
947,972 - MPMX19_03528 0.45 +0.0
947,972 - MPMX19_03528 0.45 -0.8
947,972 - MPMX19_03528 0.45 -0.6
947,972 - MPMX19_03528 0.45 -1.0
947,972 - MPMX19_03528 0.45 +0.9
947,972 - MPMX19_03528 0.45 +1.3
948,139 + MPMX19_03528 0.58 -0.5
948,140 - MPMX19_03528 0.58 -0.3
948,166 + MPMX19_03528 0.60 -0.3
948,166 + MPMX19_03528 0.60 -1.8
948,167 - MPMX19_03528 0.60 -0.8
948,193 + MPMX19_03528 0.62 +0.6
948,193 + MPMX19_03528 0.62 +1.6
948,193 + MPMX19_03528 0.62 -1.1
948,193 + MPMX19_03528 0.62 -0.6
948,193 + MPMX19_03528 0.62 -1.4
948,193 + MPMX19_03528 0.62 -0.7
948,193 + MPMX19_03528 0.62 -0.0
948,193 + MPMX19_03528 0.62 -1.1
948,193 + MPMX19_03528 0.62 -0.6
948,193 + MPMX19_03528 0.62 -0.4
948,193 + MPMX19_03528 0.62 -0.3
948,194 - MPMX19_03528 0.62 -0.6
948,194 - MPMX19_03528 0.62 -0.8
948,194 - MPMX19_03528 0.62 +0.1
948,194 - MPMX19_03528 0.62 -0.8
948,194 - MPMX19_03528 0.62 -1.4
948,194 - MPMX19_03528 0.62 -0.6
948,194 - MPMX19_03528 0.62 -2.0
948,204 - MPMX19_03528 0.63 +0.9
948,466 + MPMX19_03528 0.83 -0.5
948,466 + MPMX19_03528 0.83 +0.2
948,466 + MPMX19_03528 0.83 +0.0
948,466 + MPMX19_03528 0.83 -0.6
948,467 - MPMX19_03528 0.83 -0.6
948,467 - MPMX19_03528 0.83 +1.3
948,467 - MPMX19_03528 0.83 -0.8
948,467 - MPMX19_03528 0.83 -0.7
948,798 + -0.6
948,798 + +0.4
948,798 + -0.6
948,799 - -1.0
948,799 - -2.1
948,799 - +0.3
948,967 + MPMX19_03529 0.25 -1.0
948,967 + MPMX19_03529 0.25 -2.6
948,967 + MPMX19_03529 0.25 +0.4
949,257 + MPMX19_03529 0.53 -0.2
949,257 + MPMX19_03529 0.53 -1.3
949,257 + MPMX19_03529 0.53 +0.3
949,257 + MPMX19_03529 0.53 -1.8
949,258 - MPMX19_03529 0.53 +0.0
949,258 - MPMX19_03529 0.53 +0.4
949,258 - MPMX19_03529 0.53 +1.3
949,258 - MPMX19_03529 0.53 -1.4
949,258 - MPMX19_03529 0.53 -0.9
949,258 - MPMX19_03529 0.53 +0.2
949,258 - MPMX19_03529 0.53 +1.2
949,317 + MPMX19_03529 0.59 -1.3
949,317 + MPMX19_03529 0.59 -2.4
949,318 - MPMX19_03529 0.59 -2.0
949,318 - MPMX19_03529 0.59 +0.0
949,404 + MPMX19_03529 0.67 +0.6
949,404 + MPMX19_03529 0.67 -1.6
949,404 + MPMX19_03529 0.67 -0.6
949,405 - MPMX19_03529 0.67 -1.2
949,428 + MPMX19_03529 0.70 -0.1
949,429 - MPMX19_03529 0.70 -0.3
949,662 + -1.0
949,662 + -0.3
949,662 + -0.9
949,662 + +0.3
949,662 + -1.3
949,662 + -0.7
949,662 + -0.3
949,663 - -1.7
949,663 - -1.0
949,663 - +1.2
949,663 - -0.8
949,663 - -1.0

Or see this region's nucleotide sequence