Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03525

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03524 and MPMX19_03525 are separated by 40 nucleotidesMPMX19_03525 and MPMX19_03526 overlap by 4 nucleotidesMPMX19_03526 and MPMX19_03527 are separated by 57 nucleotides MPMX19_03524: MPMX19_03524 - hypothetical protein, at 943,384 to 945,315 _03524 MPMX19_03525: MPMX19_03525 - 3-dehydroquinate dehydratase, at 945,356 to 945,805 _03525 MPMX19_03526: MPMX19_03526 - Quinate/shikimate dehydrogenase (NAD(+)), at 945,802 to 946,704 _03526 MPMX19_03527: MPMX19_03527 - hypothetical protein, at 946,762 to 947,388 _03527 Position (kb) 945 946Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 944.366 kb on - strand, within MPMX19_03524at 944.593 kb on + strand, within MPMX19_03524at 944.593 kb on + strand, within MPMX19_03524at 944.593 kb on + strand, within MPMX19_03524at 944.593 kb on + strand, within MPMX19_03524at 944.593 kb on + strand, within MPMX19_03524at 944.593 kb on + strand, within MPMX19_03524at 944.593 kb on + strand, within MPMX19_03524at 944.593 kb on + strand, within MPMX19_03524at 944.594 kb on - strand, within MPMX19_03524at 944.594 kb on - strand, within MPMX19_03524at 944.594 kb on - strand, within MPMX19_03524at 944.594 kb on - strand, within MPMX19_03524at 944.594 kb on - strand, within MPMX19_03524at 944.773 kb on + strand, within MPMX19_03524at 944.773 kb on + strand, within MPMX19_03524at 944.773 kb on + strand, within MPMX19_03524at 944.773 kb on + strand, within MPMX19_03524at 944.774 kb on - strand, within MPMX19_03524at 944.774 kb on - strand, within MPMX19_03524at 945.055 kb on + strand, within MPMX19_03524at 945.055 kb on + strand, within MPMX19_03524at 945.055 kb on + strand, within MPMX19_03524at 945.055 kb on + strand, within MPMX19_03524at 945.055 kb on + strand, within MPMX19_03524at 945.056 kb on - strand, within MPMX19_03524at 945.056 kb on - strand, within MPMX19_03524at 945.056 kb on - strand, within MPMX19_03524at 945.056 kb on - strand, within MPMX19_03524at 945.056 kb on - strand, within MPMX19_03524at 945.056 kb on - strand, within MPMX19_03524at 945.056 kb on - strand, within MPMX19_03524at 945.056 kb on - strand, within MPMX19_03524at 945.056 kb on - strand, within MPMX19_03524at 945.058 kb on + strand, within MPMX19_03524at 945.059 kb on - strand, within MPMX19_03524at 945.059 kb on - strand, within MPMX19_03524at 945.130 kb on + strandat 945.130 kb on + strandat 945.130 kb on + strandat 945.130 kb on + strandat 945.130 kb on + strandat 945.130 kb on + strandat 945.130 kb on + strandat 945.131 kb on - strandat 945.131 kb on - strandat 945.166 kb on + strandat 945.166 kb on + strandat 945.166 kb on + strandat 945.166 kb on + strandat 945.166 kb on + strandat 945.166 kb on + strandat 945.166 kb on + strandat 945.166 kb on + strandat 945.166 kb on + strandat 945.166 kb on + strandat 945.166 kb on + strandat 945.166 kb on + strandat 945.167 kb on - strandat 945.304 kb on + strandat 945.304 kb on + strandat 945.425 kb on + strand, within MPMX19_03525at 945.425 kb on + strand, within MPMX19_03525at 945.425 kb on + strand, within MPMX19_03525at 945.425 kb on + strand, within MPMX19_03525at 945.425 kb on + strand, within MPMX19_03525at 945.425 kb on + strand, within MPMX19_03525at 945.425 kb on + strand, within MPMX19_03525at 945.425 kb on + strand, within MPMX19_03525at 945.425 kb on + strand, within MPMX19_03525at 945.425 kb on + strand, within MPMX19_03525at 945.425 kb on + strand, within MPMX19_03525at 945.425 kb on + strand, within MPMX19_03525at 945.425 kb on + strand, within MPMX19_03525at 945.425 kb on + strand, within MPMX19_03525at 945.425 kb on + strand, within MPMX19_03525at 945.425 kb on + strand, within MPMX19_03525at 945.425 kb on + strand, within MPMX19_03525at 945.425 kb on + strand, within MPMX19_03525at 945.426 kb on - strand, within MPMX19_03525at 945.426 kb on - strand, within MPMX19_03525at 945.426 kb on - strand, within MPMX19_03525at 945.426 kb on - strand, within MPMX19_03525at 945.426 kb on - strand, within MPMX19_03525at 945.426 kb on - strand, within MPMX19_03525at 945.426 kb on - strand, within MPMX19_03525at 945.426 kb on - strand, within MPMX19_03525at 945.426 kb on - strand, within MPMX19_03525at 945.426 kb on - strand, within MPMX19_03525at 945.426 kb on - strand, within MPMX19_03525at 945.426 kb on - strand, within MPMX19_03525at 945.426 kb on - strand, within MPMX19_03525at 945.702 kb on - strand, within MPMX19_03525at 945.702 kb on - strand, within MPMX19_03525at 945.752 kb on + strand, within MPMX19_03525at 945.752 kb on + strand, within MPMX19_03525at 945.752 kb on + strand, within MPMX19_03525at 945.752 kb on + strand, within MPMX19_03525at 945.752 kb on + strand, within MPMX19_03525at 945.753 kb on - strand, within MPMX19_03525at 945.753 kb on - strand, within MPMX19_03525at 945.753 kb on - strand, within MPMX19_03525at 945.753 kb on - strand, within MPMX19_03525at 945.843 kb on + strandat 945.843 kb on + strandat 945.843 kb on + strandat 945.844 kb on - strandat 945.844 kb on - strandat 945.844 kb on - strandat 945.844 kb on - strandat 945.844 kb on - strandat 945.938 kb on - strand, within MPMX19_03526at 945.938 kb on - strand, within MPMX19_03526at 945.938 kb on - strand, within MPMX19_03526at 946.018 kb on + strand, within MPMX19_03526at 946.018 kb on + strand, within MPMX19_03526at 946.018 kb on + strand, within MPMX19_03526at 946.019 kb on - strand, within MPMX19_03526at 946.019 kb on - strand, within MPMX19_03526at 946.019 kb on - strand, within MPMX19_03526at 946.039 kb on + strand, within MPMX19_03526at 946.039 kb on + strand, within MPMX19_03526at 946.039 kb on + strand, within MPMX19_03526at 946.039 kb on + strand, within MPMX19_03526at 946.040 kb on - strand, within MPMX19_03526at 946.040 kb on - strand, within MPMX19_03526at 946.040 kb on - strand, within MPMX19_03526at 946.519 kb on + strand, within MPMX19_03526at 946.519 kb on + strand, within MPMX19_03526at 946.520 kb on - strand, within MPMX19_03526at 946.520 kb on - strand, within MPMX19_03526at 946.705 kb on + strandat 946.706 kb on - strandat 946.722 kb on + strandat 946.722 kb on + strandat 946.723 kb on - strandat 946.723 kb on - strandat 946.723 kb on - strandat 946.723 kb on - strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.728 kb on + strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.729 kb on - strandat 946.783 kb on + strandat 946.783 kb on + strandat 946.783 kb on + strandat 946.783 kb on + strandat 946.783 kb on + strandat 946.783 kb on + strandat 946.784 kb on - strandat 946.784 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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944,366 - MPMX19_03524 0.51 -0.3
944,593 + MPMX19_03524 0.63 -1.9
944,593 + MPMX19_03524 0.63 -0.3
944,593 + MPMX19_03524 0.63 +1.0
944,593 + MPMX19_03524 0.63 -0.8
944,593 + MPMX19_03524 0.63 -1.4
944,593 + MPMX19_03524 0.63 -0.5
944,593 + MPMX19_03524 0.63 +0.0
944,593 + MPMX19_03524 0.63 -0.4
944,594 - MPMX19_03524 0.63 -1.9
944,594 - MPMX19_03524 0.63 +0.4
944,594 - MPMX19_03524 0.63 -2.2
944,594 - MPMX19_03524 0.63 -1.8
944,594 - MPMX19_03524 0.63 -0.6
944,773 + MPMX19_03524 0.72 -0.8
944,773 + MPMX19_03524 0.72 +0.0
944,773 + MPMX19_03524 0.72 +1.0
944,773 + MPMX19_03524 0.72 +0.7
944,774 - MPMX19_03524 0.72 -1.4
944,774 - MPMX19_03524 0.72 -0.9
945,055 + MPMX19_03524 0.86 -0.3
945,055 + MPMX19_03524 0.86 +0.4
945,055 + MPMX19_03524 0.86 +0.0
945,055 + MPMX19_03524 0.86 -0.4
945,055 + MPMX19_03524 0.86 +1.0
945,056 - MPMX19_03524 0.87 -2.4
945,056 - MPMX19_03524 0.87 -0.6
945,056 - MPMX19_03524 0.87 -1.1
945,056 - MPMX19_03524 0.87 -1.0
945,056 - MPMX19_03524 0.87 -0.6
945,056 - MPMX19_03524 0.87 -0.7
945,056 - MPMX19_03524 0.87 -1.2
945,056 - MPMX19_03524 0.87 -1.7
945,056 - MPMX19_03524 0.87 -1.2
945,058 + MPMX19_03524 0.87 -0.6
945,059 - MPMX19_03524 0.87 -0.3
945,059 - MPMX19_03524 0.87 -0.7
945,130 + +1.0
945,130 + -0.6
945,130 + -0.3
945,130 + -1.0
945,130 + -0.2
945,130 + -0.3
945,130 + -1.4
945,131 - -0.7
945,131 - -0.8
945,166 + +2.0
945,166 + -1.1
945,166 + -0.5
945,166 + +0.4
945,166 + +0.4
945,166 + -0.3
945,166 + +0.7
945,166 + +0.1
945,166 + +0.7
945,166 + +0.0
945,166 + -0.8
945,166 + -0.2
945,167 - -1.0
945,304 + -2.1
945,304 + +0.2
945,425 + MPMX19_03525 0.15 -1.2
945,425 + MPMX19_03525 0.15 -1.3
945,425 + MPMX19_03525 0.15 -0.2
945,425 + MPMX19_03525 0.15 -0.7
945,425 + MPMX19_03525 0.15 +0.3
945,425 + MPMX19_03525 0.15 -0.3
945,425 + MPMX19_03525 0.15 +0.6
945,425 + MPMX19_03525 0.15 -0.6
945,425 + MPMX19_03525 0.15 -2.4
945,425 + MPMX19_03525 0.15 -0.8
945,425 + MPMX19_03525 0.15 -0.8
945,425 + MPMX19_03525 0.15 -0.6
945,425 + MPMX19_03525 0.15 -0.1
945,425 + MPMX19_03525 0.15 -0.7
945,425 + MPMX19_03525 0.15 -1.4
945,425 + MPMX19_03525 0.15 -0.5
945,425 + MPMX19_03525 0.15 -0.7
945,425 + MPMX19_03525 0.15 -0.5
945,426 - MPMX19_03525 0.16 -0.3
945,426 - MPMX19_03525 0.16 -0.1
945,426 - MPMX19_03525 0.16 -0.5
945,426 - MPMX19_03525 0.16 -0.2
945,426 - MPMX19_03525 0.16 -1.0
945,426 - MPMX19_03525 0.16 -0.4
945,426 - MPMX19_03525 0.16 -1.8
945,426 - MPMX19_03525 0.16 -0.6
945,426 - MPMX19_03525 0.16 +1.7
945,426 - MPMX19_03525 0.16 -1.2
945,426 - MPMX19_03525 0.16 -1.4
945,426 - MPMX19_03525 0.16 +0.7
945,426 - MPMX19_03525 0.16 -0.6
945,702 - MPMX19_03525 0.77 -0.6
945,702 - MPMX19_03525 0.77 -1.0
945,752 + MPMX19_03525 0.88 -1.6
945,752 + MPMX19_03525 0.88 -0.4
945,752 + MPMX19_03525 0.88 -2.2
945,752 + MPMX19_03525 0.88 -0.7
945,752 + MPMX19_03525 0.88 -0.5
945,753 - MPMX19_03525 0.88 +0.4
945,753 - MPMX19_03525 0.88 -1.2
945,753 - MPMX19_03525 0.88 -0.6
945,753 - MPMX19_03525 0.88 -0.7
945,843 + -1.6
945,843 + -1.4
945,843 + -0.0
945,844 - -1.7
945,844 - -0.7
945,844 - -1.0
945,844 - +0.5
945,844 - -0.3
945,938 - MPMX19_03526 0.15 -1.0
945,938 - MPMX19_03526 0.15 -0.3
945,938 - MPMX19_03526 0.15 +1.8
946,018 + MPMX19_03526 0.24 -0.6
946,018 + MPMX19_03526 0.24 -1.1
946,018 + MPMX19_03526 0.24 -1.3
946,019 - MPMX19_03526 0.24 -0.6
946,019 - MPMX19_03526 0.24 +0.4
946,019 - MPMX19_03526 0.24 -1.4
946,039 + MPMX19_03526 0.26 -0.4
946,039 + MPMX19_03526 0.26 -0.9
946,039 + MPMX19_03526 0.26 +1.1
946,039 + MPMX19_03526 0.26 -0.3
946,040 - MPMX19_03526 0.26 -0.9
946,040 - MPMX19_03526 0.26 -1.0
946,040 - MPMX19_03526 0.26 -0.3
946,519 + MPMX19_03526 0.79 +0.1
946,519 + MPMX19_03526 0.79 -3.1
946,520 - MPMX19_03526 0.80 -0.8
946,520 - MPMX19_03526 0.80 -0.7
946,705 + +0.4
946,706 - -1.6
946,722 + -0.1
946,722 + -0.4
946,723 - +0.4
946,723 - +0.2
946,723 - -1.5
946,723 - -0.1
946,728 + -1.6
946,728 + +0.4
946,728 + -0.8
946,728 + -0.1
946,728 + -0.1
946,728 + +0.2
946,728 + +0.2
946,728 + -0.1
946,728 + +0.3
946,728 + -0.8
946,728 + -0.7
946,729 - -0.8
946,729 - +0.4
946,729 - -1.2
946,729 - -0.1
946,729 - -1.0
946,729 - -0.6
946,729 - -1.6
946,729 - -0.4
946,729 - -0.3
946,729 - -1.1
946,783 + +1.2
946,783 + -0.1
946,783 + -0.0
946,783 + -0.4
946,783 + +0.4
946,783 + -1.0
946,784 - -0.8
946,784 - -0.6

Or see this region's nucleotide sequence