Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03522 and MPMX19_03523 are separated by 96 nucleotides MPMX19_03523 and MPMX19_03524 are separated by 355 nucleotides MPMX19_03524 and MPMX19_03525 are separated by 40 nucleotides MPMX19_03525 and MPMX19_03526 overlap by 4 nucleotides
MPMX19_03522: MPMX19_03522 - Flavohemoprotein, at 940,368 to 942,467
_03522
MPMX19_03523: MPMX19_03523 - hypothetical protein, at 942,564 to 943,028
_03523
MPMX19_03524: MPMX19_03524 - hypothetical protein, at 943,384 to 945,315
_03524
MPMX19_03525: MPMX19_03525 - 3-dehydroquinate dehydratase, at 945,356 to 945,805
_03525
MPMX19_03526: MPMX19_03526 - Quinate/shikimate dehydrogenase (NAD(+)), at 945,802 to 946,704
_03526
Position (kb) 943
944
945
946 Strain fitness (log2 ratio) -2
-1
0
1
2 at 942.534 kb on - strand at 942.559 kb on + strand at 942.559 kb on + strand at 942.559 kb on + strand at 942.559 kb on + strand at 942.559 kb on + strand at 942.559 kb on + strand at 942.560 kb on - strand at 942.560 kb on - strand at 942.673 kb on - strand, within MPMX19_03523 at 942.673 kb on - strand, within MPMX19_03523 at 942.674 kb on + strand, within MPMX19_03523 at 942.674 kb on + strand, within MPMX19_03523 at 942.675 kb on - strand, within MPMX19_03523 at 942.675 kb on - strand, within MPMX19_03523 at 942.826 kb on - strand, within MPMX19_03523 at 942.826 kb on - strand, within MPMX19_03523 at 942.831 kb on + strand, within MPMX19_03523 at 942.831 kb on + strand, within MPMX19_03523 at 942.832 kb on - strand, within MPMX19_03523 at 942.832 kb on - strand, within MPMX19_03523 at 942.861 kb on + strand, within MPMX19_03523 at 942.862 kb on - strand, within MPMX19_03523 at 943.124 kb on - strand at 943.137 kb on + strand at 943.137 kb on + strand at 943.137 kb on + strand at 943.138 kb on - strand at 943.163 kb on + strand at 943.163 kb on + strand at 943.163 kb on + strand at 943.163 kb on + strand at 943.163 kb on + strand at 943.164 kb on - strand at 943.164 kb on - strand at 943.164 kb on - strand at 943.164 kb on - strand at 943.199 kb on - strand at 943.215 kb on + strand at 943.243 kb on + strand at 943.244 kb on - strand at 943.354 kb on - strand at 943.354 kb on - strand at 943.354 kb on - strand at 943.401 kb on + strand at 943.401 kb on + strand at 943.402 kb on - strand at 943.801 kb on + strand, within MPMX19_03524 at 943.802 kb on - strand, within MPMX19_03524 at 944.366 kb on - strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.594 kb on - strand, within MPMX19_03524 at 944.594 kb on - strand, within MPMX19_03524 at 944.594 kb on - strand, within MPMX19_03524 at 944.594 kb on - strand, within MPMX19_03524 at 944.594 kb on - strand, within MPMX19_03524 at 944.773 kb on + strand, within MPMX19_03524 at 944.773 kb on + strand, within MPMX19_03524 at 944.773 kb on + strand, within MPMX19_03524 at 944.773 kb on + strand, within MPMX19_03524 at 944.774 kb on - strand, within MPMX19_03524 at 944.774 kb on - strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.058 kb on + strand, within MPMX19_03524 at 945.059 kb on - strand, within MPMX19_03524 at 945.059 kb on - strand, within MPMX19_03524 at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.131 kb on - strand at 945.131 kb on - strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.167 kb on - strand at 945.304 kb on + strand at 945.304 kb on + strand at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.702 kb on - strand, within MPMX19_03525 at 945.702 kb on - strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.843 kb on + strand at 945.843 kb on + strand at 945.843 kb on + strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.938 kb on - strand, within MPMX19_03526 at 945.938 kb on - strand, within MPMX19_03526 at 945.938 kb on - strand, within MPMX19_03526 at 946.018 kb on + strand, within MPMX19_03526 at 946.018 kb on + strand, within MPMX19_03526 at 946.018 kb on + strand, within MPMX19_03526 at 946.019 kb on - strand, within MPMX19_03526 at 946.019 kb on - strand, within MPMX19_03526 at 946.019 kb on - strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.040 kb on - strand, within MPMX19_03526 at 946.040 kb on - strand, within MPMX19_03526 at 946.040 kb on - strand, within MPMX19_03526
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 942,534 - -0.6 942,559 + +0.3 942,559 + +0.9 942,559 + +1.0 942,559 + -0.7 942,559 + -0.8 942,559 + -0.8 942,560 - -1.2 942,560 - -1.2 942,673 - MPMX19_03523 0.23 -0.2 942,673 - MPMX19_03523 0.23 +0.0 942,674 + MPMX19_03523 0.24 -0.3 942,674 + MPMX19_03523 0.24 -0.4 942,675 - MPMX19_03523 0.24 -0.8 942,675 - MPMX19_03523 0.24 -0.4 942,826 - MPMX19_03523 0.56 -1.7 942,826 - MPMX19_03523 0.56 -0.6 942,831 + MPMX19_03523 0.57 -0.6 942,831 + MPMX19_03523 0.57 -0.6 942,832 - MPMX19_03523 0.58 -0.6 942,832 - MPMX19_03523 0.58 -1.3 942,861 + MPMX19_03523 0.64 -0.3 942,862 - MPMX19_03523 0.64 +1.0 943,124 - -1.3 943,137 + -0.6 943,137 + +2.0 943,137 + -0.9 943,138 - -0.5 943,163 + -0.7 943,163 + +1.0 943,163 + +1.0 943,163 + -1.3 943,163 + -0.8 943,164 - -2.4 943,164 - -0.4 943,164 - -1.4 943,164 - -0.7 943,199 - +0.1 943,215 + -0.3 943,243 + +0.2 943,244 - -0.3 943,354 - -0.2 943,354 - -1.2 943,354 - -0.4 943,401 + -1.3 943,401 + -2.0 943,402 - +0.1 943,801 + MPMX19_03524 0.22 -0.5 943,802 - MPMX19_03524 0.22 +0.4 944,366 - MPMX19_03524 0.51 -0.3 944,593 + MPMX19_03524 0.63 -1.9 944,593 + MPMX19_03524 0.63 -0.3 944,593 + MPMX19_03524 0.63 +1.0 944,593 + MPMX19_03524 0.63 -0.8 944,593 + MPMX19_03524 0.63 -1.4 944,593 + MPMX19_03524 0.63 -0.5 944,593 + MPMX19_03524 0.63 +0.0 944,593 + MPMX19_03524 0.63 -0.4 944,594 - MPMX19_03524 0.63 -1.9 944,594 - MPMX19_03524 0.63 +0.4 944,594 - MPMX19_03524 0.63 -2.2 944,594 - MPMX19_03524 0.63 -1.8 944,594 - MPMX19_03524 0.63 -0.6 944,773 + MPMX19_03524 0.72 -0.8 944,773 + MPMX19_03524 0.72 +0.0 944,773 + MPMX19_03524 0.72 +1.0 944,773 + MPMX19_03524 0.72 +0.7 944,774 - MPMX19_03524 0.72 -1.4 944,774 - MPMX19_03524 0.72 -0.9 945,055 + MPMX19_03524 0.86 -0.3 945,055 + MPMX19_03524 0.86 +0.4 945,055 + MPMX19_03524 0.86 +0.0 945,055 + MPMX19_03524 0.86 -0.4 945,055 + MPMX19_03524 0.86 +1.0 945,056 - MPMX19_03524 0.87 -2.4 945,056 - MPMX19_03524 0.87 -0.6 945,056 - MPMX19_03524 0.87 -1.1 945,056 - MPMX19_03524 0.87 -1.0 945,056 - MPMX19_03524 0.87 -0.6 945,056 - MPMX19_03524 0.87 -0.7 945,056 - MPMX19_03524 0.87 -1.2 945,056 - MPMX19_03524 0.87 -1.7 945,056 - MPMX19_03524 0.87 -1.2 945,058 + MPMX19_03524 0.87 -0.6 945,059 - MPMX19_03524 0.87 -0.3 945,059 - MPMX19_03524 0.87 -0.7 945,130 + +1.0 945,130 + -0.6 945,130 + -0.3 945,130 + -1.0 945,130 + -0.2 945,130 + -0.3 945,130 + -1.4 945,131 - -0.7 945,131 - -0.8 945,166 + +2.0 945,166 + -1.1 945,166 + -0.5 945,166 + +0.4 945,166 + +0.4 945,166 + -0.3 945,166 + +0.7 945,166 + +0.1 945,166 + +0.7 945,166 + +0.0 945,166 + -0.8 945,166 + -0.2 945,167 - -1.0 945,304 + -2.1 945,304 + +0.2 945,425 + MPMX19_03525 0.15 -1.2 945,425 + MPMX19_03525 0.15 -1.3 945,425 + MPMX19_03525 0.15 -0.2 945,425 + MPMX19_03525 0.15 -0.7 945,425 + MPMX19_03525 0.15 +0.3 945,425 + MPMX19_03525 0.15 -0.3 945,425 + MPMX19_03525 0.15 +0.6 945,425 + MPMX19_03525 0.15 -0.6 945,425 + MPMX19_03525 0.15 -2.4 945,425 + MPMX19_03525 0.15 -0.8 945,425 + MPMX19_03525 0.15 -0.8 945,425 + MPMX19_03525 0.15 -0.6 945,425 + MPMX19_03525 0.15 -0.1 945,425 + MPMX19_03525 0.15 -0.7 945,425 + MPMX19_03525 0.15 -1.4 945,425 + MPMX19_03525 0.15 -0.5 945,425 + MPMX19_03525 0.15 -0.7 945,425 + MPMX19_03525 0.15 -0.5 945,426 - MPMX19_03525 0.16 -0.3 945,426 - MPMX19_03525 0.16 -0.1 945,426 - MPMX19_03525 0.16 -0.5 945,426 - MPMX19_03525 0.16 -0.2 945,426 - MPMX19_03525 0.16 -1.0 945,426 - MPMX19_03525 0.16 -0.4 945,426 - MPMX19_03525 0.16 -1.8 945,426 - MPMX19_03525 0.16 -0.6 945,426 - MPMX19_03525 0.16 +1.7 945,426 - MPMX19_03525 0.16 -1.2 945,426 - MPMX19_03525 0.16 -1.4 945,426 - MPMX19_03525 0.16 +0.7 945,426 - MPMX19_03525 0.16 -0.6 945,702 - MPMX19_03525 0.77 -0.6 945,702 - MPMX19_03525 0.77 -1.0 945,752 + MPMX19_03525 0.88 -1.6 945,752 + MPMX19_03525 0.88 -0.4 945,752 + MPMX19_03525 0.88 -2.2 945,752 + MPMX19_03525 0.88 -0.7 945,752 + MPMX19_03525 0.88 -0.5 945,753 - MPMX19_03525 0.88 +0.4 945,753 - MPMX19_03525 0.88 -1.2 945,753 - MPMX19_03525 0.88 -0.6 945,753 - MPMX19_03525 0.88 -0.7 945,843 + -1.6 945,843 + -1.4 945,843 + -0.0 945,844 - -1.7 945,844 - -0.7 945,844 - -1.0 945,844 - +0.5 945,844 - -0.3 945,938 - MPMX19_03526 0.15 -1.0 945,938 - MPMX19_03526 0.15 -0.3 945,938 - MPMX19_03526 0.15 +1.8 946,018 + MPMX19_03526 0.24 -0.6 946,018 + MPMX19_03526 0.24 -1.1 946,018 + MPMX19_03526 0.24 -1.3 946,019 - MPMX19_03526 0.24 -0.6 946,019 - MPMX19_03526 0.24 +0.4 946,019 - MPMX19_03526 0.24 -1.4 946,039 + MPMX19_03526 0.26 -0.4 946,039 + MPMX19_03526 0.26 -0.9 946,039 + MPMX19_03526 0.26 +1.1 946,039 + MPMX19_03526 0.26 -0.3 946,040 - MPMX19_03526 0.26 -0.9 946,040 - MPMX19_03526 0.26 -1.0 946,040 - MPMX19_03526 0.26 -0.3
Or see this region's nucleotide sequence