Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03515 and MPMX19_03516 overlap by 4 nucleotides MPMX19_03516 and MPMX19_03517 are separated by 547 nucleotides
MPMX19_03515: MPMX19_03515 - Hydrogenase-4 component B, at 932,074 to 934,101
_03515
MPMX19_03516: MPMX19_03516 - Hydrogenase-4 component A, at 934,098 to 934,691
_03516
MPMX19_03517: MPMX19_03517 - Hydrogenase-4 component A, at 935,239 to 935,781
_03517
Position (kb) 934
935 Strain fitness (log2 ratio) -2
-1
0
1
2 at 933.163 kb on - strand, within MPMX19_03515 at 933.218 kb on + strand, within MPMX19_03515 at 933.602 kb on + strand, within MPMX19_03515 at 933.602 kb on + strand, within MPMX19_03515 at 933.602 kb on + strand, within MPMX19_03515 at 933.602 kb on + strand, within MPMX19_03515 at 933.603 kb on - strand, within MPMX19_03515 at 933.656 kb on + strand, within MPMX19_03515 at 933.656 kb on + strand, within MPMX19_03515 at 933.656 kb on + strand, within MPMX19_03515 at 933.785 kb on + strand, within MPMX19_03515 at 933.785 kb on + strand, within MPMX19_03515 at 933.797 kb on + strand, within MPMX19_03515 at 933.797 kb on + strand, within MPMX19_03515 at 933.797 kb on + strand, within MPMX19_03515 at 933.798 kb on - strand, within MPMX19_03515 at 933.798 kb on - strand, within MPMX19_03515 at 933.798 kb on - strand, within MPMX19_03515 at 933.798 kb on - strand, within MPMX19_03515 at 933.798 kb on - strand, within MPMX19_03515 at 933.798 kb on - strand, within MPMX19_03515 at 933.798 kb on - strand, within MPMX19_03515 at 933.809 kb on + strand, within MPMX19_03515 at 933.809 kb on + strand, within MPMX19_03515 at 933.809 kb on + strand, within MPMX19_03515 at 933.810 kb on - strand, within MPMX19_03515 at 933.810 kb on - strand, within MPMX19_03515 at 934.691 kb on + strand at 934.919 kb on - strand at 935.051 kb on + strand at 935.467 kb on + strand, within MPMX19_03517 at 935.468 kb on - strand, within MPMX19_03517
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 933,163 - MPMX19_03515 0.54 +1.2 933,218 + MPMX19_03515 0.56 -0.9 933,602 + MPMX19_03515 0.75 -0.1 933,602 + MPMX19_03515 0.75 +0.4 933,602 + MPMX19_03515 0.75 -2.7 933,602 + MPMX19_03515 0.75 -0.8 933,603 - MPMX19_03515 0.75 -0.6 933,656 + MPMX19_03515 0.78 -0.8 933,656 + MPMX19_03515 0.78 +1.8 933,656 + MPMX19_03515 0.78 -1.5 933,785 + MPMX19_03515 0.84 -0.8 933,785 + MPMX19_03515 0.84 -1.7 933,797 + MPMX19_03515 0.85 -0.3 933,797 + MPMX19_03515 0.85 -0.4 933,797 + MPMX19_03515 0.85 +0.1 933,798 - MPMX19_03515 0.85 -0.8 933,798 - MPMX19_03515 0.85 +1.4 933,798 - MPMX19_03515 0.85 +0.1 933,798 - MPMX19_03515 0.85 -0.5 933,798 - MPMX19_03515 0.85 -0.7 933,798 - MPMX19_03515 0.85 -1.3 933,798 - MPMX19_03515 0.85 -0.7 933,809 + MPMX19_03515 0.86 -2.1 933,809 + MPMX19_03515 0.86 -0.3 933,809 + MPMX19_03515 0.86 -1.2 933,810 - MPMX19_03515 0.86 +1.0 933,810 - MPMX19_03515 0.86 +0.2 934,691 + -1.0 934,919 - -2.1 935,051 + -1.3 935,467 + MPMX19_03517 0.42 +0.0 935,468 - MPMX19_03517 0.42 +0.0
Or see this region's nucleotide sequence