Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03508

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03505 and MPMX19_03506 are separated by 43 nucleotidesMPMX19_03506 and MPMX19_03507 overlap by 4 nucleotidesMPMX19_03507 and MPMX19_03508 overlap by 4 nucleotidesMPMX19_03508 and MPMX19_03509 overlap by 4 nucleotidesMPMX19_03509 and MPMX19_03510 are separated by 12 nucleotides MPMX19_03505: MPMX19_03505 - putative formate transporter 1, at 922,355 to 923,263 _03505 MPMX19_03506: MPMX19_03506 - Hydrogenase 3 maturation protease, at 923,307 to 923,765 _03506 MPMX19_03507: MPMX19_03507 - hypothetical protein, at 923,762 to 924,229 _03507 MPMX19_03508: MPMX19_03508 - Formate hydrogenlyase subunit 7, at 924,226 to 925,029 _03508 MPMX19_03509: MPMX19_03509 - NAD(P)H-quinone oxidoreductase subunit I, chloroplastic, at 925,026 to 925,601 _03509 MPMX19_03510: MPMX19_03510 - Formate hydrogenlyase subunit 5, at 925,614 to 927,329 _03510 Position (kb) 924 925 926Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 923.324 kb on - strandat 923.324 kb on - strandat 923.751 kb on + strandat 923.752 kb on - strandat 923.752 kb on - strandat 923.787 kb on + strandat 923.787 kb on + strandat 923.787 kb on + strandat 923.788 kb on - strandat 923.788 kb on - strandat 923.788 kb on - strandat 924.078 kb on + strand, within MPMX19_03507at 924.078 kb on + strand, within MPMX19_03507at 924.079 kb on - strand, within MPMX19_03507at 924.079 kb on - strand, within MPMX19_03507at 924.081 kb on + strand, within MPMX19_03507at 924.081 kb on + strand, within MPMX19_03507at 924.081 kb on + strand, within MPMX19_03507at 924.081 kb on + strand, within MPMX19_03507at 924.082 kb on - strand, within MPMX19_03507at 924.082 kb on - strand, within MPMX19_03507at 924.082 kb on - strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.148 kb on - strand, within MPMX19_03507at 924.148 kb on - strand, within MPMX19_03507at 924.148 kb on - strand, within MPMX19_03507at 924.148 kb on - strand, within MPMX19_03507at 924.216 kb on - strandat 924.216 kb on - strandat 924.216 kb on - strandat 924.216 kb on - strandat 924.464 kb on + strand, within MPMX19_03508at 924.464 kb on + strand, within MPMX19_03508at 924.464 kb on + strand, within MPMX19_03508at 924.608 kb on + strand, within MPMX19_03508at 924.608 kb on + strand, within MPMX19_03508at 924.608 kb on + strand, within MPMX19_03508at 924.608 kb on + strand, within MPMX19_03508at 924.608 kb on + strand, within MPMX19_03508at 924.608 kb on + strand, within MPMX19_03508at 924.608 kb on + strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.609 kb on - strand, within MPMX19_03508at 924.653 kb on + strand, within MPMX19_03508at 924.653 kb on + strand, within MPMX19_03508at 924.654 kb on - strand, within MPMX19_03508at 924.654 kb on - strand, within MPMX19_03508at 924.654 kb on - strand, within MPMX19_03508at 924.654 kb on - strand, within MPMX19_03508at 924.678 kb on + strand, within MPMX19_03508at 924.679 kb on - strand, within MPMX19_03508at 924.695 kb on + strand, within MPMX19_03508at 924.695 kb on + strand, within MPMX19_03508at 924.696 kb on - strand, within MPMX19_03508at 924.731 kb on + strand, within MPMX19_03508at 924.731 kb on + strand, within MPMX19_03508at 924.732 kb on - strand, within MPMX19_03508at 924.908 kb on + strand, within MPMX19_03508at 924.909 kb on - strand, within MPMX19_03508at 924.909 kb on - strand, within MPMX19_03508at 924.909 kb on - strand, within MPMX19_03508at 924.914 kb on + strand, within MPMX19_03508at 924.915 kb on - strand, within MPMX19_03508at 924.915 kb on - strand, within MPMX19_03508at 925.016 kb on - strandat 925.207 kb on + strand, within MPMX19_03509at 925.207 kb on + strand, within MPMX19_03509at 925.207 kb on + strand, within MPMX19_03509at 925.208 kb on - strand, within MPMX19_03509at 925.208 kb on - strand, within MPMX19_03509at 925.496 kb on + strand, within MPMX19_03509at 925.496 kb on + strand, within MPMX19_03509at 925.496 kb on + strand, within MPMX19_03509at 925.496 kb on + strand, within MPMX19_03509at 925.497 kb on - strand, within MPMX19_03509at 925.497 kb on - strand, within MPMX19_03509at 925.497 kb on - strand, within MPMX19_03509at 925.549 kb on + strandat 925.549 kb on + strandat 925.549 kb on + strandat 925.549 kb on + strandat 925.549 kb on + strandat 925.550 kb on - strandat 925.550 kb on - strandat 925.550 kb on - strandat 925.590 kb on + strandat 925.590 kb on + strandat 925.590 kb on + strandat 925.590 kb on + strandat 925.591 kb on - strandat 925.591 kb on - strandat 925.591 kb on - strandat 925.648 kb on + strandat 925.649 kb on - strandat 925.666 kb on + strandat 925.666 kb on + strandat 925.667 kb on - strandat 925.667 kb on - strandat 925.667 kb on - strandat 925.729 kb on + strandat 925.730 kb on - strandat 925.730 kb on - strandat 925.775 kb on + strandat 925.776 kb on - strandat 925.792 kb on + strand, within MPMX19_03510at 925.793 kb on - strand, within MPMX19_03510at 925.793 kb on - strand, within MPMX19_03510at 925.793 kb on - strand, within MPMX19_03510at 925.793 kb on - strand, within MPMX19_03510at 925.793 kb on - strand, within MPMX19_03510at 925.816 kb on + strand, within MPMX19_03510at 925.816 kb on + strand, within MPMX19_03510at 925.816 kb on + strand, within MPMX19_03510at 925.817 kb on - strand, within MPMX19_03510at 925.817 kb on - strand, within MPMX19_03510at 925.843 kb on + strand, within MPMX19_03510at 925.933 kb on + strand, within MPMX19_03510at 925.933 kb on + strand, within MPMX19_03510at 925.933 kb on + strand, within MPMX19_03510at 925.933 kb on + strand, within MPMX19_03510at 925.933 kb on + strand, within MPMX19_03510at 925.933 kb on + strand, within MPMX19_03510at 925.933 kb on + strand, within MPMX19_03510at 925.933 kb on + strand, within MPMX19_03510at 925.934 kb on - strand, within MPMX19_03510at 925.934 kb on - strand, within MPMX19_03510at 925.934 kb on - strand, within MPMX19_03510at 925.934 kb on - strand, within MPMX19_03510at 925.934 kb on - strand, within MPMX19_03510at 925.934 kb on - strand, within MPMX19_03510at 925.934 kb on - strand, within MPMX19_03510at 925.934 kb on - strand, within MPMX19_03510at 925.934 kb on - strand, within MPMX19_03510at 925.934 kb on - strand, within MPMX19_03510at 925.934 kb on - strand, within MPMX19_03510at 925.934 kb on - strand, within MPMX19_03510at 925.934 kb on - strand, within MPMX19_03510at 925.934 kb on - strand, within MPMX19_03510

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
923,324 - -2.0
923,324 - +0.7
923,751 + +0.0
923,752 - +0.0
923,752 - -0.1
923,787 + +0.2
923,787 + -2.5
923,787 + -1.4
923,788 - -0.8
923,788 - -1.2
923,788 - -0.8
924,078 + MPMX19_03507 0.68 +0.0
924,078 + MPMX19_03507 0.68 -0.6
924,079 - MPMX19_03507 0.68 +0.6
924,079 - MPMX19_03507 0.68 -0.9
924,081 + MPMX19_03507 0.68 -1.2
924,081 + MPMX19_03507 0.68 -1.0
924,081 + MPMX19_03507 0.68 -0.8
924,081 + MPMX19_03507 0.68 -0.7
924,082 - MPMX19_03507 0.68 +0.1
924,082 - MPMX19_03507 0.68 -1.8
924,082 - MPMX19_03507 0.68 -1.3
924,147 + MPMX19_03507 0.82 -0.6
924,147 + MPMX19_03507 0.82 -1.4
924,147 + MPMX19_03507 0.82 -1.2
924,147 + MPMX19_03507 0.82 +0.1
924,147 + MPMX19_03507 0.82 -0.6
924,147 + MPMX19_03507 0.82 -1.6
924,148 - MPMX19_03507 0.82 -0.4
924,148 - MPMX19_03507 0.82 +0.8
924,148 - MPMX19_03507 0.82 -0.3
924,148 - MPMX19_03507 0.82 -0.4
924,216 - -1.4
924,216 - -0.8
924,216 - -0.4
924,216 - -0.4
924,464 + MPMX19_03508 0.30 -2.7
924,464 + MPMX19_03508 0.30 -0.1
924,464 + MPMX19_03508 0.30 -1.0
924,608 + MPMX19_03508 0.48 -1.6
924,608 + MPMX19_03508 0.48 -0.3
924,608 + MPMX19_03508 0.48 +0.4
924,608 + MPMX19_03508 0.48 -1.4
924,608 + MPMX19_03508 0.48 -1.3
924,608 + MPMX19_03508 0.48 -0.8
924,608 + MPMX19_03508 0.48 +1.2
924,609 - MPMX19_03508 0.48 -0.6
924,609 - MPMX19_03508 0.48 -1.3
924,609 - MPMX19_03508 0.48 -0.6
924,609 - MPMX19_03508 0.48 -1.9
924,609 - MPMX19_03508 0.48 -3.1
924,609 - MPMX19_03508 0.48 -0.9
924,609 - MPMX19_03508 0.48 -0.1
924,609 - MPMX19_03508 0.48 -1.2
924,609 - MPMX19_03508 0.48 -1.6
924,609 - MPMX19_03508 0.48 -2.1
924,609 - MPMX19_03508 0.48 -1.2
924,609 - MPMX19_03508 0.48 -0.2
924,609 - MPMX19_03508 0.48 +1.3
924,653 + MPMX19_03508 0.53 -0.3
924,653 + MPMX19_03508 0.53 -1.2
924,654 - MPMX19_03508 0.53 +0.0
924,654 - MPMX19_03508 0.53 -1.1
924,654 - MPMX19_03508 0.53 -1.1
924,654 - MPMX19_03508 0.53 +0.8
924,678 + MPMX19_03508 0.56 +0.0
924,679 - MPMX19_03508 0.56 +0.0
924,695 + MPMX19_03508 0.58 -0.8
924,695 + MPMX19_03508 0.58 -0.8
924,696 - MPMX19_03508 0.58 +0.0
924,731 + MPMX19_03508 0.63 +0.3
924,731 + MPMX19_03508 0.63 +0.7
924,732 - MPMX19_03508 0.63 -2.0
924,908 + MPMX19_03508 0.85 -0.1
924,909 - MPMX19_03508 0.85 +0.1
924,909 - MPMX19_03508 0.85 +1.0
924,909 - MPMX19_03508 0.85 -0.6
924,914 + MPMX19_03508 0.86 -1.2
924,915 - MPMX19_03508 0.86 -2.0
924,915 - MPMX19_03508 0.86 -0.7
925,016 - -0.8
925,207 + MPMX19_03509 0.31 -1.1
925,207 + MPMX19_03509 0.31 +1.4
925,207 + MPMX19_03509 0.31 -1.0
925,208 - MPMX19_03509 0.32 -0.1
925,208 - MPMX19_03509 0.32 -2.3
925,496 + MPMX19_03509 0.82 -0.6
925,496 + MPMX19_03509 0.82 +0.6
925,496 + MPMX19_03509 0.82 -1.6
925,496 + MPMX19_03509 0.82 -1.1
925,497 - MPMX19_03509 0.82 +2.0
925,497 - MPMX19_03509 0.82 -0.5
925,497 - MPMX19_03509 0.82 +0.0
925,549 + -0.2
925,549 + +1.0
925,549 + -1.3
925,549 + -0.5
925,549 + -0.6
925,550 - -2.0
925,550 - -0.3
925,550 - +1.4
925,590 + -0.9
925,590 + -0.6
925,590 + -1.2
925,590 + +2.0
925,591 - -1.2
925,591 - -0.4
925,591 - -0.7
925,648 + -0.3
925,649 - -0.8
925,666 + -1.6
925,666 + -0.2
925,667 - -0.9
925,667 - -0.6
925,667 - -1.2
925,729 + -1.3
925,730 - -1.4
925,730 - +0.3
925,775 + -1.0
925,776 - -0.3
925,792 + MPMX19_03510 0.10 -1.6
925,793 - MPMX19_03510 0.10 +0.0
925,793 - MPMX19_03510 0.10 +0.3
925,793 - MPMX19_03510 0.10 -0.5
925,793 - MPMX19_03510 0.10 -0.4
925,793 - MPMX19_03510 0.10 -1.2
925,816 + MPMX19_03510 0.12 -0.4
925,816 + MPMX19_03510 0.12 +0.8
925,816 + MPMX19_03510 0.12 +0.4
925,817 - MPMX19_03510 0.12 +0.3
925,817 - MPMX19_03510 0.12 +1.0
925,843 + MPMX19_03510 0.13 -0.7
925,933 + MPMX19_03510 0.19 -0.2
925,933 + MPMX19_03510 0.19 -1.2
925,933 + MPMX19_03510 0.19 -0.4
925,933 + MPMX19_03510 0.19 +1.3
925,933 + MPMX19_03510 0.19 -0.2
925,933 + MPMX19_03510 0.19 -0.5
925,933 + MPMX19_03510 0.19 -0.4
925,933 + MPMX19_03510 0.19 -0.8
925,934 - MPMX19_03510 0.19 +0.0
925,934 - MPMX19_03510 0.19 -0.2
925,934 - MPMX19_03510 0.19 -0.7
925,934 - MPMX19_03510 0.19 -0.1
925,934 - MPMX19_03510 0.19 -0.6
925,934 - MPMX19_03510 0.19 -0.8
925,934 - MPMX19_03510 0.19 -0.4
925,934 - MPMX19_03510 0.19 -1.0
925,934 - MPMX19_03510 0.19 -0.5
925,934 - MPMX19_03510 0.19 -1.0
925,934 - MPMX19_03510 0.19 -1.0
925,934 - MPMX19_03510 0.19 +0.1
925,934 - MPMX19_03510 0.19 -0.8
925,934 - MPMX19_03510 0.19 -2.4

Or see this region's nucleotide sequence