Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03476

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03475 and MPMX19_03476 are separated by 12 nucleotidesMPMX19_03476 and MPMX19_03477 are separated by 17 nucleotides MPMX19_03475: MPMX19_03475 - Putative acid--amine ligase YgiC, at 886,115 to 887,323 _03475 MPMX19_03476: MPMX19_03476 - hypothetical protein, at 887,336 to 888,100 _03476 MPMX19_03477: MPMX19_03477 - Nicotinate phosphoribosyltransferase, at 888,118 to 889,434 _03477 Position (kb) 887 888 889Strain fitness (log2 ratio) -2 -1 0 1 2at 886.415 kb on + strand, within MPMX19_03475at 886.415 kb on + strand, within MPMX19_03475at 886.415 kb on + strand, within MPMX19_03475at 886.415 kb on + strand, within MPMX19_03475at 886.416 kb on - strand, within MPMX19_03475at 886.416 kb on - strand, within MPMX19_03475at 886.416 kb on - strand, within MPMX19_03475at 886.416 kb on - strand, within MPMX19_03475at 886.416 kb on - strand, within MPMX19_03475at 886.499 kb on + strand, within MPMX19_03475at 886.500 kb on - strand, within MPMX19_03475at 886.500 kb on - strand, within MPMX19_03475at 886.500 kb on - strand, within MPMX19_03475at 886.694 kb on + strand, within MPMX19_03475at 886.695 kb on - strand, within MPMX19_03475at 886.695 kb on - strand, within MPMX19_03475at 886.761 kb on - strand, within MPMX19_03475at 886.826 kb on + strand, within MPMX19_03475at 886.826 kb on + strand, within MPMX19_03475at 887.029 kb on + strand, within MPMX19_03475at 887.029 kb on + strand, within MPMX19_03475at 887.029 kb on + strand, within MPMX19_03475at 887.030 kb on - strand, within MPMX19_03475at 887.030 kb on - strand, within MPMX19_03475at 887.142 kb on - strand, within MPMX19_03475at 887.163 kb on - strand, within MPMX19_03475at 887.163 kb on - strand, within MPMX19_03475at 887.394 kb on + strandat 887.395 kb on - strandat 887.395 kb on - strandat 887.395 kb on - strandat 887.481 kb on + strand, within MPMX19_03476at 887.481 kb on + strand, within MPMX19_03476at 887.482 kb on - strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.502 kb on + strand, within MPMX19_03476at 887.503 kb on - strand, within MPMX19_03476at 887.503 kb on - strand, within MPMX19_03476at 887.503 kb on - strand, within MPMX19_03476at 887.850 kb on + strand, within MPMX19_03476at 888.170 kb on + strandat 888.210 kb on - strandat 888.210 kb on - strandat 888.210 kb on - strandat 888.356 kb on + strand, within MPMX19_03477at 888.356 kb on + strand, within MPMX19_03477at 888.356 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.482 kb on + strand, within MPMX19_03477at 888.483 kb on - strand, within MPMX19_03477at 888.483 kb on - strand, within MPMX19_03477at 888.483 kb on - strand, within MPMX19_03477at 888.483 kb on - strand, within MPMX19_03477at 888.483 kb on - strand, within MPMX19_03477at 888.483 kb on - strand, within MPMX19_03477at 888.483 kb on - strand, within MPMX19_03477at 888.483 kb on - strand, within MPMX19_03477at 888.617 kb on + strand, within MPMX19_03477at 888.617 kb on + strand, within MPMX19_03477at 888.617 kb on + strand, within MPMX19_03477at 888.617 kb on + strand, within MPMX19_03477at 888.617 kb on + strand, within MPMX19_03477at 888.617 kb on + strand, within MPMX19_03477at 888.617 kb on + strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.618 kb on - strand, within MPMX19_03477at 888.647 kb on + strand, within MPMX19_03477at 888.647 kb on + strand, within MPMX19_03477at 888.647 kb on + strand, within MPMX19_03477at 888.647 kb on + strand, within MPMX19_03477at 888.648 kb on - strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.815 kb on + strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.816 kb on - strand, within MPMX19_03477at 888.929 kb on + strand, within MPMX19_03477at 888.929 kb on + strand, within MPMX19_03477at 888.929 kb on + strand, within MPMX19_03477at 888.930 kb on - strand, within MPMX19_03477at 888.930 kb on - strand, within MPMX19_03477at 888.930 kb on - strand, within MPMX19_03477at 888.930 kb on - strand, within MPMX19_03477at 889.007 kb on + strand, within MPMX19_03477at 889.007 kb on + strand, within MPMX19_03477at 889.007 kb on + strand, within MPMX19_03477at 889.007 kb on + strand, within MPMX19_03477at 889.007 kb on + strand, within MPMX19_03477at 889.008 kb on - strand, within MPMX19_03477at 889.008 kb on - strand, within MPMX19_03477

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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886,415 + MPMX19_03475 0.25 +0.3
886,415 + MPMX19_03475 0.25 -0.3
886,415 + MPMX19_03475 0.25 +1.3
886,415 + MPMX19_03475 0.25 +2.0
886,416 - MPMX19_03475 0.25 -0.5
886,416 - MPMX19_03475 0.25 -0.6
886,416 - MPMX19_03475 0.25 -2.1
886,416 - MPMX19_03475 0.25 -0.9
886,416 - MPMX19_03475 0.25 -0.0
886,499 + MPMX19_03475 0.32 -0.3
886,500 - MPMX19_03475 0.32 -0.9
886,500 - MPMX19_03475 0.32 -1.2
886,500 - MPMX19_03475 0.32 -0.0
886,694 + MPMX19_03475 0.48 -0.8
886,695 - MPMX19_03475 0.48 -1.8
886,695 - MPMX19_03475 0.48 -1.8
886,761 - MPMX19_03475 0.53 +0.7
886,826 + MPMX19_03475 0.59 -2.6
886,826 + MPMX19_03475 0.59 -1.0
887,029 + MPMX19_03475 0.76 -0.2
887,029 + MPMX19_03475 0.76 -0.6
887,029 + MPMX19_03475 0.76 -0.9
887,030 - MPMX19_03475 0.76 -0.8
887,030 - MPMX19_03475 0.76 +0.5
887,142 - MPMX19_03475 0.85 -0.1
887,163 - MPMX19_03475 0.87 -1.0
887,163 - MPMX19_03475 0.87 -0.6
887,394 + -0.8
887,395 - +0.6
887,395 - -0.2
887,395 - -1.2
887,481 + MPMX19_03476 0.19 +1.4
887,481 + MPMX19_03476 0.19 +0.5
887,482 - MPMX19_03476 0.19 +0.4
887,502 + MPMX19_03476 0.22 +1.7
887,502 + MPMX19_03476 0.22 +0.4
887,502 + MPMX19_03476 0.22 -0.3
887,502 + MPMX19_03476 0.22 +0.2
887,502 + MPMX19_03476 0.22 +1.6
887,502 + MPMX19_03476 0.22 -0.3
887,503 - MPMX19_03476 0.22 -0.9
887,503 - MPMX19_03476 0.22 -1.3
887,503 - MPMX19_03476 0.22 -0.8
887,850 + MPMX19_03476 0.67 +0.4
888,170 + +1.5
888,210 - +0.2
888,210 - -0.3
888,210 - -1.2
888,356 + MPMX19_03477 0.18 -0.8
888,356 + MPMX19_03477 0.18 -0.3
888,356 + MPMX19_03477 0.18 -1.5
888,482 + MPMX19_03477 0.28 +0.4
888,482 + MPMX19_03477 0.28 +0.6
888,482 + MPMX19_03477 0.28 -0.6
888,482 + MPMX19_03477 0.28 -0.2
888,482 + MPMX19_03477 0.28 +0.3
888,482 + MPMX19_03477 0.28 +0.9
888,482 + MPMX19_03477 0.28 -0.8
888,482 + MPMX19_03477 0.28 -0.7
888,482 + MPMX19_03477 0.28 -0.6
888,482 + MPMX19_03477 0.28 -1.6
888,483 - MPMX19_03477 0.28 -1.3
888,483 - MPMX19_03477 0.28 +1.6
888,483 - MPMX19_03477 0.28 -0.0
888,483 - MPMX19_03477 0.28 -0.7
888,483 - MPMX19_03477 0.28 -0.5
888,483 - MPMX19_03477 0.28 -0.6
888,483 - MPMX19_03477 0.28 -1.1
888,483 - MPMX19_03477 0.28 +0.3
888,617 + MPMX19_03477 0.38 -0.6
888,617 + MPMX19_03477 0.38 -0.0
888,617 + MPMX19_03477 0.38 -0.3
888,617 + MPMX19_03477 0.38 +0.4
888,617 + MPMX19_03477 0.38 -0.6
888,617 + MPMX19_03477 0.38 -1.6
888,617 + MPMX19_03477 0.38 +0.6
888,618 - MPMX19_03477 0.38 +0.3
888,618 - MPMX19_03477 0.38 -1.0
888,618 - MPMX19_03477 0.38 -0.3
888,618 - MPMX19_03477 0.38 -0.0
888,618 - MPMX19_03477 0.38 +1.0
888,618 - MPMX19_03477 0.38 -1.5
888,618 - MPMX19_03477 0.38 +0.4
888,618 - MPMX19_03477 0.38 -0.2
888,618 - MPMX19_03477 0.38 +2.4
888,618 - MPMX19_03477 0.38 -0.2
888,618 - MPMX19_03477 0.38 +0.1
888,618 - MPMX19_03477 0.38 -0.9
888,618 - MPMX19_03477 0.38 +0.3
888,647 + MPMX19_03477 0.40 -1.1
888,647 + MPMX19_03477 0.40 +0.2
888,647 + MPMX19_03477 0.40 -1.2
888,647 + MPMX19_03477 0.40 -1.1
888,648 - MPMX19_03477 0.40 -0.1
888,815 + MPMX19_03477 0.53 +0.8
888,815 + MPMX19_03477 0.53 +0.1
888,815 + MPMX19_03477 0.53 -0.0
888,815 + MPMX19_03477 0.53 -2.5
888,815 + MPMX19_03477 0.53 -2.2
888,815 + MPMX19_03477 0.53 -0.0
888,815 + MPMX19_03477 0.53 -1.0
888,815 + MPMX19_03477 0.53 -0.3
888,815 + MPMX19_03477 0.53 -0.3
888,815 + MPMX19_03477 0.53 -0.2
888,815 + MPMX19_03477 0.53 -1.2
888,815 + MPMX19_03477 0.53 -1.5
888,816 - MPMX19_03477 0.53 +1.0
888,816 - MPMX19_03477 0.53 -0.5
888,816 - MPMX19_03477 0.53 -1.1
888,816 - MPMX19_03477 0.53 -0.3
888,816 - MPMX19_03477 0.53 -1.0
888,816 - MPMX19_03477 0.53 +0.4
888,816 - MPMX19_03477 0.53 -0.5
888,816 - MPMX19_03477 0.53 +0.5
888,816 - MPMX19_03477 0.53 +0.7
888,816 - MPMX19_03477 0.53 -1.8
888,816 - MPMX19_03477 0.53 -2.3
888,816 - MPMX19_03477 0.53 -0.8
888,816 - MPMX19_03477 0.53 -0.0
888,816 - MPMX19_03477 0.53 -2.2
888,816 - MPMX19_03477 0.53 -0.3
888,816 - MPMX19_03477 0.53 -0.8
888,929 + MPMX19_03477 0.62 -0.3
888,929 + MPMX19_03477 0.62 -0.7
888,929 + MPMX19_03477 0.62 -0.6
888,930 - MPMX19_03477 0.62 +0.4
888,930 - MPMX19_03477 0.62 +0.4
888,930 - MPMX19_03477 0.62 -1.1
888,930 - MPMX19_03477 0.62 -0.9
889,007 + MPMX19_03477 0.68 -0.6
889,007 + MPMX19_03477 0.68 +0.8
889,007 + MPMX19_03477 0.68 +0.1
889,007 + MPMX19_03477 0.68 +0.2
889,007 + MPMX19_03477 0.68 -0.0
889,008 - MPMX19_03477 0.68 +1.0
889,008 - MPMX19_03477 0.68 -0.8

Or see this region's nucleotide sequence