Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03457 and MPMX19_03458 are separated by 291 nucleotides MPMX19_03458 and MPMX19_03459 are separated by 68 nucleotides
MPMX19_03457: MPMX19_03457 - hypothetical protein, at 853,315 to 855,117
_03457
MPMX19_03458: MPMX19_03458 - hypothetical protein, at 855,409 to 856,488
_03458
MPMX19_03459: MPMX19_03459 - hypothetical protein, at 856,557 to 868,442
_03459
Position (kb) 855
856
857 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 854.564 kb on + strand, within MPMX19_03457 at 854.564 kb on + strand, within MPMX19_03457 at 854.565 kb on - strand, within MPMX19_03457 at 854.882 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 855.117 kb on + strand at 855.117 kb on + strand at 855.118 kb on - strand at 855.118 kb on - strand at 855.118 kb on - strand at 855.118 kb on - strand at 855.118 kb on - strand at 855.140 kb on + strand at 855.140 kb on + strand at 855.140 kb on + strand at 855.140 kb on + strand at 855.140 kb on + strand at 855.141 kb on - strand at 855.141 kb on - strand at 855.141 kb on - strand at 855.141 kb on - strand at 855.141 kb on - strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.177 kb on - strand at 855.177 kb on - strand at 855.177 kb on - strand at 855.244 kb on + strand at 855.244 kb on + strand at 855.245 kb on - strand at 855.245 kb on - strand at 855.245 kb on - strand at 855.245 kb on - strand at 855.245 kb on - strand at 855.331 kb on + strand at 855.366 kb on - strand at 855.462 kb on + strand at 855.462 kb on + strand at 855.462 kb on + strand at 855.463 kb on - strand at 855.463 kb on - strand at 855.463 kb on - strand at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.690 kb on + strand, within MPMX19_03458 at 855.690 kb on + strand, within MPMX19_03458 at 855.690 kb on + strand, within MPMX19_03458 at 855.691 kb on - strand, within MPMX19_03458 at 855.715 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 856.381 kb on + strand at 856.381 kb on + strand at 856.381 kb on + strand at 856.382 kb on - strand at 856.382 kb on - strand at 856.382 kb on - strand at 856.530 kb on + strand at 856.530 kb on + strand at 856.531 kb on - strand at 856.531 kb on - strand at 856.531 kb on - strand at 856.531 kb on - strand at 856.574 kb on + strand at 856.575 kb on - strand at 856.620 kb on + strand at 856.620 kb on + strand at 856.621 kb on - strand at 856.621 kb on - strand at 856.621 kb on - strand at 856.701 kb on + strand at 856.701 kb on + strand at 856.701 kb on + strand at 856.702 kb on - strand at 856.702 kb on - strand at 856.702 kb on - strand at 856.785 kb on + strand at 856.785 kb on + strand at 856.947 kb on + strand at 856.947 kb on + strand at 856.947 kb on + strand at 856.947 kb on + strand at 856.947 kb on + strand at 856.948 kb on - strand at 856.948 kb on - strand at 856.948 kb on - strand at 856.948 kb on - strand at 857.032 kb on - strand at 857.238 kb on + strand at 857.238 kb on + strand at 857.238 kb on + strand at 857.238 kb on + strand at 857.239 kb on - strand at 857.239 kb on - strand at 857.239 kb on - strand at 857.313 kb on + strand at 857.313 kb on + strand at 857.313 kb on + strand at 857.313 kb on + strand at 857.314 kb on - strand at 857.314 kb on - strand at 857.314 kb on - strand at 857.314 kb on - strand at 857.314 kb on - strand at 857.314 kb on - strand at 857.314 kb on - strand at 857.340 kb on + strand at 857.340 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 854,564 + MPMX19_03457 0.69 -0.0 854,564 + MPMX19_03457 0.69 +0.6 854,565 - MPMX19_03457 0.69 +1.7 854,882 + MPMX19_03457 0.87 +0.8 854,912 + MPMX19_03457 0.89 -1.3 854,912 + MPMX19_03457 0.89 -2.7 854,912 + MPMX19_03457 0.89 -1.8 854,912 + MPMX19_03457 0.89 -0.7 854,912 + MPMX19_03457 0.89 -0.2 854,912 + MPMX19_03457 0.89 -3.0 854,913 - MPMX19_03457 0.89 +0.1 854,913 - MPMX19_03457 0.89 -0.6 854,913 - MPMX19_03457 0.89 -0.8 854,913 - MPMX19_03457 0.89 -1.0 854,913 - MPMX19_03457 0.89 +0.4 854,913 - MPMX19_03457 0.89 +0.3 855,117 + -0.3 855,117 + -1.5 855,118 - -1.8 855,118 - -1.2 855,118 - -1.5 855,118 - +0.8 855,118 - -0.4 855,140 + -2.9 855,140 + -0.5 855,140 + -0.3 855,140 + +0.4 855,140 + -2.2 855,141 - +0.6 855,141 - +0.5 855,141 - -0.3 855,141 - -1.6 855,141 - +0.6 855,170 + +0.6 855,170 + +0.6 855,170 + -0.5 855,170 + -0.3 855,170 + +0.4 855,170 + -1.4 855,170 + -0.6 855,171 - -0.8 855,171 - -0.8 855,171 - -0.2 855,171 - -0.3 855,171 - +0.8 855,171 - -1.9 855,171 - -0.4 855,171 - -2.3 855,177 - +1.3 855,177 - -0.7 855,177 - -2.0 855,244 + -1.0 855,244 + +0.3 855,245 - -1.3 855,245 - -0.8 855,245 - -2.3 855,245 - -0.8 855,245 - -0.3 855,331 + -0.2 855,366 - -1.1 855,462 + +0.1 855,462 + -1.3 855,462 + -1.8 855,463 - +0.1 855,463 - -0.1 855,463 - -1.0 855,520 + MPMX19_03458 0.10 -0.5 855,520 + MPMX19_03458 0.10 +0.1 855,520 + MPMX19_03458 0.10 -1.0 855,520 + MPMX19_03458 0.10 +0.4 855,520 + MPMX19_03458 0.10 +3.0 855,520 + MPMX19_03458 0.10 +0.8 855,520 + MPMX19_03458 0.10 -1.3 855,520 + MPMX19_03458 0.10 +0.1 855,521 - MPMX19_03458 0.10 -0.7 855,521 - MPMX19_03458 0.10 -0.1 855,521 - MPMX19_03458 0.10 +0.3 855,521 - MPMX19_03458 0.10 -0.3 855,521 - MPMX19_03458 0.10 +0.4 855,521 - MPMX19_03458 0.10 -1.7 855,690 + MPMX19_03458 0.26 -0.0 855,690 + MPMX19_03458 0.26 +0.2 855,690 + MPMX19_03458 0.26 +2.7 855,691 - MPMX19_03458 0.26 -1.5 855,715 + MPMX19_03458 0.28 -0.5 855,733 + MPMX19_03458 0.30 +0.2 855,733 + MPMX19_03458 0.30 -1.3 855,733 + MPMX19_03458 0.30 -0.6 855,733 + MPMX19_03458 0.30 -0.9 855,733 + MPMX19_03458 0.30 -0.3 855,733 + MPMX19_03458 0.30 -0.0 855,733 + MPMX19_03458 0.30 +1.6 855,733 + MPMX19_03458 0.30 -0.3 855,733 + MPMX19_03458 0.30 +0.5 855,733 + MPMX19_03458 0.30 -0.3 855,733 + MPMX19_03458 0.30 -0.0 855,733 + MPMX19_03458 0.30 -0.8 855,733 + MPMX19_03458 0.30 -1.5 855,734 - MPMX19_03458 0.30 +0.2 855,734 - MPMX19_03458 0.30 -1.7 855,734 - MPMX19_03458 0.30 -0.8 855,734 - MPMX19_03458 0.30 -0.1 855,734 - MPMX19_03458 0.30 -1.3 855,734 - MPMX19_03458 0.30 +0.3 855,734 - MPMX19_03458 0.30 +0.4 855,734 - MPMX19_03458 0.30 -2.0 855,734 - MPMX19_03458 0.30 +0.7 855,734 - MPMX19_03458 0.30 +0.2 855,734 - MPMX19_03458 0.30 -0.9 855,734 - MPMX19_03458 0.30 +0.4 855,734 - MPMX19_03458 0.30 +1.3 855,734 - MPMX19_03458 0.30 +0.3 855,734 - MPMX19_03458 0.30 +0.3 856,381 + -1.0 856,381 + -0.0 856,381 + +0.8 856,382 - -0.3 856,382 - +1.4 856,382 - -1.8 856,530 + -0.2 856,530 + -1.9 856,531 - -0.6 856,531 - -1.3 856,531 - -0.6 856,531 - -1.2 856,574 + -1.0 856,575 - +0.5 856,620 + -1.9 856,620 + +0.7 856,621 - -1.0 856,621 - -0.8 856,621 - -1.3 856,701 + -0.1 856,701 + -0.9 856,701 + +0.4 856,702 - -1.4 856,702 - -2.2 856,702 - +0.2 856,785 + +0.4 856,785 + -0.0 856,947 + -0.2 856,947 + +1.4 856,947 + -1.3 856,947 + +0.1 856,947 + +0.1 856,948 - -0.3 856,948 - -2.2 856,948 - -0.2 856,948 - -0.8 857,032 - +0.6 857,238 + +2.0 857,238 + -0.3 857,238 + -1.0 857,238 + -1.6 857,239 - +1.1 857,239 - +0.8 857,239 - -1.0 857,313 + -1.1 857,313 + -1.3 857,313 + +0.6 857,313 + +0.4 857,314 - +0.4 857,314 - -0.2 857,314 - +0.2 857,314 - +1.4 857,314 - -0.5 857,314 - -1.2 857,314 - -0.5 857,340 + +0.5 857,340 + +0.1
Or see this region's nucleotide sequence