Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03447 and MPMX19_03448 are separated by 26 nucleotides MPMX19_03448 and MPMX19_03449 are separated by 211 nucleotides
MPMX19_03447: MPMX19_03447 - hypothetical protein, at 843,349 to 844,590
_03447
MPMX19_03448: MPMX19_03448 - hypothetical protein, at 844,617 to 845,423
_03448
MPMX19_03449: MPMX19_03449 - hypothetical protein, at 845,635 to 846,339
_03449
Position (kb) 844
845
846 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.925 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.980 kb on - strand, within MPMX19_03447 at 843.980 kb on - strand, within MPMX19_03447 at 844.037 kb on - strand, within MPMX19_03447 at 844.037 kb on - strand, within MPMX19_03447 at 844.037 kb on - strand, within MPMX19_03447 at 844.042 kb on + strand, within MPMX19_03447 at 844.042 kb on + strand, within MPMX19_03447 at 844.042 kb on + strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.045 kb on + strand, within MPMX19_03447 at 844.045 kb on + strand, within MPMX19_03447 at 844.045 kb on + strand, within MPMX19_03447 at 844.046 kb on - strand, within MPMX19_03447 at 844.046 kb on - strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.094 kb on - strand, within MPMX19_03447 at 844.094 kb on - strand, within MPMX19_03447 at 844.094 kb on - strand, within MPMX19_03447 at 844.229 kb on + strand, within MPMX19_03447 at 844.229 kb on + strand, within MPMX19_03447 at 844.229 kb on + strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.316 kb on - strand, within MPMX19_03447 at 844.316 kb on - strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.499 kb on - strand at 844.614 kb on + strand at 844.614 kb on + strand at 844.614 kb on + strand at 844.614 kb on + strand at 844.614 kb on + strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.633 kb on - strand at 844.633 kb on - strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.689 kb on - strand at 844.689 kb on - strand at 844.878 kb on + strand, within MPMX19_03448 at 844.878 kb on + strand, within MPMX19_03448 at 844.878 kb on + strand, within MPMX19_03448 at 844.905 kb on + strand, within MPMX19_03448 at 844.950 kb on + strand, within MPMX19_03448 at 844.951 kb on - strand, within MPMX19_03448 at 844.951 kb on - strand, within MPMX19_03448 at 845.025 kb on + strand, within MPMX19_03448 at 845.025 kb on + strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.169 kb on + strand, within MPMX19_03448 at 845.169 kb on + strand, within MPMX19_03448 at 845.169 kb on + strand, within MPMX19_03448 at 845.170 kb on - strand, within MPMX19_03448 at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.534 kb on + strand at 845.534 kb on + strand at 845.534 kb on + strand at 845.535 kb on - strand at 845.535 kb on - strand at 845.584 kb on + strand at 845.584 kb on + strand at 845.584 kb on + strand at 845.584 kb on + strand at 845.585 kb on - strand at 845.585 kb on - strand at 845.782 kb on + strand, within MPMX19_03449 at 845.783 kb on - strand, within MPMX19_03449 at 845.818 kb on + strand, within MPMX19_03449 at 845.819 kb on - strand, within MPMX19_03449 at 845.819 kb on - strand, within MPMX19_03449 at 845.851 kb on + strand, within MPMX19_03449 at 845.851 kb on + strand, within MPMX19_03449 at 845.851 kb on + strand, within MPMX19_03449 at 845.908 kb on + strand, within MPMX19_03449 at 845.909 kb on - strand, within MPMX19_03449 at 845.909 kb on - strand, within MPMX19_03449 at 846.029 kb on - strand, within MPMX19_03449 at 846.034 kb on + strand, within MPMX19_03449 at 846.035 kb on - strand, within MPMX19_03449 at 846.067 kb on + strand, within MPMX19_03449 at 846.067 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.145 kb on + strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.146 kb on - strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.154 kb on + strand, within MPMX19_03449 at 846.155 kb on - strand, within MPMX19_03449 at 846.155 kb on - strand, within MPMX19_03449 at 846.337 kb on + strand at 846.338 kb on - strand at 846.374 kb on + strand at 846.374 kb on + strand at 846.374 kb on + strand at 846.374 kb on + strand at 846.374 kb on + strand at 846.375 kb on - strand at 846.375 kb on - strand at 846.423 kb on + strand at 846.423 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 843,673 + MPMX19_03447 0.26 -1.8 843,673 + MPMX19_03447 0.26 +0.7 843,673 + MPMX19_03447 0.26 -0.4 843,673 + MPMX19_03447 0.26 +0.6 843,673 + MPMX19_03447 0.26 +0.1 843,673 + MPMX19_03447 0.26 -1.2 843,673 + MPMX19_03447 0.26 +0.5 843,673 + MPMX19_03447 0.26 +0.1 843,673 + MPMX19_03447 0.26 +0.5 843,673 + MPMX19_03447 0.26 +0.3 843,674 - MPMX19_03447 0.26 -0.0 843,674 - MPMX19_03447 0.26 +0.3 843,674 - MPMX19_03447 0.26 -0.2 843,674 - MPMX19_03447 0.26 -1.0 843,674 - MPMX19_03447 0.26 -0.9 843,674 - MPMX19_03447 0.26 -0.5 843,674 - MPMX19_03447 0.26 -1.8 843,674 - MPMX19_03447 0.26 -1.8 843,674 - MPMX19_03447 0.26 -0.3 843,674 - MPMX19_03447 0.26 -0.5 843,674 - MPMX19_03447 0.26 -1.9 843,823 + MPMX19_03447 0.38 +0.4 843,823 + MPMX19_03447 0.38 +0.4 843,823 + MPMX19_03447 0.38 -1.6 843,823 + MPMX19_03447 0.38 -1.2 843,823 + MPMX19_03447 0.38 -0.6 843,823 + MPMX19_03447 0.38 +1.1 843,824 - MPMX19_03447 0.38 -0.1 843,824 - MPMX19_03447 0.38 -1.0 843,824 - MPMX19_03447 0.38 -1.2 843,824 - MPMX19_03447 0.38 -1.0 843,824 - MPMX19_03447 0.38 -0.5 843,925 + MPMX19_03447 0.46 -0.9 843,943 + MPMX19_03447 0.48 +0.2 843,943 + MPMX19_03447 0.48 -1.2 843,943 + MPMX19_03447 0.48 -2.7 843,943 + MPMX19_03447 0.48 +0.7 843,943 + MPMX19_03447 0.48 +0.7 843,943 + MPMX19_03447 0.48 +0.1 843,943 + MPMX19_03447 0.48 -1.5 843,943 + MPMX19_03447 0.48 -1.3 843,943 + MPMX19_03447 0.48 -1.9 843,943 + MPMX19_03447 0.48 -0.9 843,943 + MPMX19_03447 0.48 -2.4 843,944 - MPMX19_03447 0.48 -1.3 843,944 - MPMX19_03447 0.48 -0.6 843,944 - MPMX19_03447 0.48 -0.0 843,944 - MPMX19_03447 0.48 -0.3 843,944 - MPMX19_03447 0.48 -0.1 843,944 - MPMX19_03447 0.48 -0.8 843,944 - MPMX19_03447 0.48 -0.8 843,944 - MPMX19_03447 0.48 -1.0 843,944 - MPMX19_03447 0.48 -0.8 843,944 - MPMX19_03447 0.48 -0.3 843,944 - MPMX19_03447 0.48 -1.5 843,979 + MPMX19_03447 0.51 -1.3 843,979 + MPMX19_03447 0.51 -0.2 843,979 + MPMX19_03447 0.51 +0.3 843,979 + MPMX19_03447 0.51 -1.7 843,979 + MPMX19_03447 0.51 -0.5 843,980 - MPMX19_03447 0.51 -1.5 843,980 - MPMX19_03447 0.51 -0.6 844,037 - MPMX19_03447 0.55 +0.4 844,037 - MPMX19_03447 0.55 -1.5 844,037 - MPMX19_03447 0.55 +0.4 844,042 + MPMX19_03447 0.56 -0.1 844,042 + MPMX19_03447 0.56 -0.2 844,042 + MPMX19_03447 0.56 -0.3 844,043 - MPMX19_03447 0.56 -0.6 844,043 - MPMX19_03447 0.56 -0.6 844,043 - MPMX19_03447 0.56 +0.6 844,043 - MPMX19_03447 0.56 -1.0 844,043 - MPMX19_03447 0.56 -0.3 844,043 - MPMX19_03447 0.56 -0.6 844,043 - MPMX19_03447 0.56 -1.0 844,043 - MPMX19_03447 0.56 -1.3 844,043 - MPMX19_03447 0.56 -0.8 844,043 - MPMX19_03447 0.56 -0.2 844,045 + MPMX19_03447 0.56 -0.0 844,045 + MPMX19_03447 0.56 -0.2 844,045 + MPMX19_03447 0.56 -1.0 844,046 - MPMX19_03447 0.56 -1.6 844,046 - MPMX19_03447 0.56 -0.7 844,093 + MPMX19_03447 0.60 -1.6 844,093 + MPMX19_03447 0.60 -0.7 844,093 + MPMX19_03447 0.60 -0.2 844,093 + MPMX19_03447 0.60 +0.4 844,093 + MPMX19_03447 0.60 -1.3 844,093 + MPMX19_03447 0.60 -1.0 844,094 - MPMX19_03447 0.60 +0.8 844,094 - MPMX19_03447 0.60 -0.2 844,094 - MPMX19_03447 0.60 -1.0 844,229 + MPMX19_03447 0.71 -2.8 844,229 + MPMX19_03447 0.71 +1.4 844,229 + MPMX19_03447 0.71 -1.2 844,230 - MPMX19_03447 0.71 -0.1 844,230 - MPMX19_03447 0.71 -1.0 844,230 - MPMX19_03447 0.71 -1.0 844,230 - MPMX19_03447 0.71 +1.4 844,230 - MPMX19_03447 0.71 -1.6 844,316 - MPMX19_03447 0.78 -0.6 844,316 - MPMX19_03447 0.78 -1.3 844,345 + MPMX19_03447 0.80 -0.6 844,345 + MPMX19_03447 0.80 -0.2 844,345 + MPMX19_03447 0.80 +0.1 844,345 + MPMX19_03447 0.80 -0.8 844,345 + MPMX19_03447 0.80 +0.5 844,345 + MPMX19_03447 0.80 +1.0 844,345 + MPMX19_03447 0.80 +0.0 844,345 + MPMX19_03447 0.80 -0.5 844,346 - MPMX19_03447 0.80 +0.3 844,346 - MPMX19_03447 0.80 -0.2 844,346 - MPMX19_03447 0.80 -0.1 844,346 - MPMX19_03447 0.80 -1.0 844,346 - MPMX19_03447 0.80 +0.4 844,346 - MPMX19_03447 0.80 +0.4 844,346 - MPMX19_03447 0.80 -1.3 844,346 - MPMX19_03447 0.80 -1.7 844,499 - -0.7 844,614 + +0.4 844,614 + +0.8 844,614 + -1.2 844,614 + +0.4 844,614 + -0.8 844,615 - +0.2 844,615 - +1.0 844,615 - -0.8 844,615 - -0.6 844,615 - -0.2 844,615 - -0.2 844,615 - -1.3 844,633 - -0.8 844,633 - +1.0 844,688 + -0.3 844,688 + +1.0 844,688 + -0.8 844,688 + +0.3 844,688 + +0.4 844,689 - +0.4 844,689 - +0.7 844,878 + MPMX19_03448 0.32 +0.4 844,878 + MPMX19_03448 0.32 -0.6 844,878 + MPMX19_03448 0.32 -0.0 844,905 + MPMX19_03448 0.36 -1.3 844,950 + MPMX19_03448 0.41 -1.6 844,951 - MPMX19_03448 0.41 -1.1 844,951 - MPMX19_03448 0.41 -1.3 845,025 + MPMX19_03448 0.51 -0.4 845,025 + MPMX19_03448 0.51 -0.7 845,026 - MPMX19_03448 0.51 +1.3 845,026 - MPMX19_03448 0.51 -0.8 845,026 - MPMX19_03448 0.51 -0.0 845,026 - MPMX19_03448 0.51 -0.0 845,026 - MPMX19_03448 0.51 +0.4 845,169 + MPMX19_03448 0.68 -1.1 845,169 + MPMX19_03448 0.68 -0.2 845,169 + MPMX19_03448 0.68 -0.8 845,170 - MPMX19_03448 0.69 -1.5 845,357 + -1.7 845,357 + -0.2 845,357 + -1.1 845,357 + -0.7 845,357 + +0.3 845,357 + +0.2 845,357 + -0.7 845,357 + -2.3 845,358 - -0.2 845,358 - -0.9 845,358 - +1.4 845,358 - +0.4 845,358 - +0.4 845,534 + -1.8 845,534 + -0.6 845,534 + -0.1 845,535 - +0.2 845,535 - -0.2 845,584 + -1.9 845,584 + -0.0 845,584 + -1.1 845,584 + -0.8 845,585 - +0.5 845,585 - -0.8 845,782 + MPMX19_03449 0.21 -1.0 845,783 - MPMX19_03449 0.21 +0.2 845,818 + MPMX19_03449 0.26 +1.0 845,819 - MPMX19_03449 0.26 -0.2 845,819 - MPMX19_03449 0.26 -0.3 845,851 + MPMX19_03449 0.31 +0.1 845,851 + MPMX19_03449 0.31 -2.1 845,851 + MPMX19_03449 0.31 +0.8 845,908 + MPMX19_03449 0.39 -1.9 845,909 - MPMX19_03449 0.39 -0.6 845,909 - MPMX19_03449 0.39 -0.9 846,029 - MPMX19_03449 0.56 -0.3 846,034 + MPMX19_03449 0.57 +0.7 846,035 - MPMX19_03449 0.57 -0.6 846,067 + MPMX19_03449 0.61 +0.2 846,067 + MPMX19_03449 0.61 +1.4 846,145 + MPMX19_03449 0.72 -1.3 846,145 + MPMX19_03449 0.72 +0.4 846,145 + MPMX19_03449 0.72 -0.8 846,145 + MPMX19_03449 0.72 +0.3 846,145 + MPMX19_03449 0.72 +0.3 846,145 + MPMX19_03449 0.72 -0.5 846,146 - MPMX19_03449 0.72 -0.6 846,146 - MPMX19_03449 0.72 -0.3 846,146 - MPMX19_03449 0.72 -1.6 846,146 - MPMX19_03449 0.72 -1.3 846,146 - MPMX19_03449 0.72 -0.0 846,146 - MPMX19_03449 0.72 -0.6 846,154 + MPMX19_03449 0.74 -1.0 846,154 + MPMX19_03449 0.74 -0.3 846,154 + MPMX19_03449 0.74 -1.3 846,154 + MPMX19_03449 0.74 -0.4 846,154 + MPMX19_03449 0.74 +0.4 846,154 + MPMX19_03449 0.74 -2.4 846,154 + MPMX19_03449 0.74 -0.0 846,155 - MPMX19_03449 0.74 -1.7 846,155 - MPMX19_03449 0.74 -0.9 846,337 + -0.6 846,338 - +0.5 846,374 + -0.6 846,374 + -2.0 846,374 + +0.2 846,374 + -1.8 846,374 + -0.9 846,375 - +0.6 846,375 - +0.2 846,423 + -1.1 846,423 + -0.8
Or see this region's nucleotide sequence