Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03418

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03417 and MPMX19_03418 overlap by 4 nucleotidesMPMX19_03418 and MPMX19_03419 overlap by 37 nucleotides MPMX19_03417: MPMX19_03417 - Protein ClpV1, at 807,089 to 809,740 _03417 MPMX19_03418: MPMX19_03418 - hypothetical protein, at 809,737 to 810,774 _03418 MPMX19_03419: MPMX19_03419 - hypothetical protein, at 810,738 to 812,534 _03419 Position (kb) 809 810 811Strain fitness (log2 ratio) -2 -1 0 1 2at 809.081 kb on + strand, within MPMX19_03417at 809.081 kb on + strand, within MPMX19_03417at 809.082 kb on - strand, within MPMX19_03417at 809.082 kb on - strand, within MPMX19_03417at 809.082 kb on - strand, within MPMX19_03417at 809.151 kb on + strand, within MPMX19_03417at 809.151 kb on + strand, within MPMX19_03417at 809.151 kb on + strand, within MPMX19_03417at 809.151 kb on + strand, within MPMX19_03417at 809.151 kb on + strand, within MPMX19_03417at 809.151 kb on + strand, within MPMX19_03417at 809.151 kb on + strand, within MPMX19_03417at 809.152 kb on - strand, within MPMX19_03417at 809.152 kb on - strand, within MPMX19_03417at 809.152 kb on - strand, within MPMX19_03417at 809.152 kb on - strand, within MPMX19_03417at 809.152 kb on - strand, within MPMX19_03417at 809.152 kb on - strand, within MPMX19_03417at 809.565 kb on + strandat 809.565 kb on + strandat 809.565 kb on + strandat 809.565 kb on + strandat 809.565 kb on + strandat 809.565 kb on + strandat 809.565 kb on + strandat 809.566 kb on - strandat 809.566 kb on - strandat 809.566 kb on - strandat 809.566 kb on - strandat 809.566 kb on - strandat 809.566 kb on - strandat 809.566 kb on - strandat 809.643 kb on + strandat 809.644 kb on - strandat 809.644 kb on - strandat 809.644 kb on - strandat 809.644 kb on - strandat 809.644 kb on - strandat 810.017 kb on + strand, within MPMX19_03418at 810.017 kb on + strand, within MPMX19_03418at 810.018 kb on - strand, within MPMX19_03418at 810.387 kb on - strand, within MPMX19_03418at 810.422 kb on + strand, within MPMX19_03418at 810.422 kb on + strand, within MPMX19_03418at 810.422 kb on + strand, within MPMX19_03418at 810.422 kb on + strand, within MPMX19_03418at 810.422 kb on + strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.841 kb on + strandat 810.841 kb on + strandat 810.841 kb on + strandat 810.842 kb on - strandat 810.842 kb on - strandat 811.045 kb on + strand, within MPMX19_03419at 811.045 kb on + strand, within MPMX19_03419at 811.045 kb on + strand, within MPMX19_03419at 811.045 kb on + strand, within MPMX19_03419at 811.045 kb on + strand, within MPMX19_03419at 811.046 kb on - strand, within MPMX19_03419at 811.046 kb on - strand, within MPMX19_03419at 811.046 kb on - strand, within MPMX19_03419at 811.046 kb on - strand, within MPMX19_03419at 811.046 kb on - strand, within MPMX19_03419at 811.046 kb on - strand, within MPMX19_03419at 811.046 kb on - strand, within MPMX19_03419at 811.345 kb on + strand, within MPMX19_03419at 811.345 kb on + strand, within MPMX19_03419at 811.345 kb on + strand, within MPMX19_03419at 811.345 kb on + strand, within MPMX19_03419at 811.346 kb on - strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.456 kb on + strand, within MPMX19_03419at 811.457 kb on - strand, within MPMX19_03419at 811.457 kb on - strand, within MPMX19_03419at 811.457 kb on - strand, within MPMX19_03419at 811.457 kb on - strand, within MPMX19_03419at 811.457 kb on - strand, within MPMX19_03419at 811.457 kb on - strand, within MPMX19_03419at 811.457 kb on - strand, within MPMX19_03419at 811.457 kb on - strand, within MPMX19_03419at 811.555 kb on + strand, within MPMX19_03419at 811.741 kb on + strand, within MPMX19_03419at 811.742 kb on - strand, within MPMX19_03419at 811.771 kb on + strand, within MPMX19_03419at 811.771 kb on + strand, within MPMX19_03419at 811.771 kb on + strand, within MPMX19_03419at 811.771 kb on + strand, within MPMX19_03419at 811.772 kb on - strand, within MPMX19_03419

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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809,081 + MPMX19_03417 0.75 -0.2
809,081 + MPMX19_03417 0.75 +0.3
809,082 - MPMX19_03417 0.75 -0.8
809,082 - MPMX19_03417 0.75 -1.2
809,082 - MPMX19_03417 0.75 -0.9
809,151 + MPMX19_03417 0.78 -1.7
809,151 + MPMX19_03417 0.78 -0.2
809,151 + MPMX19_03417 0.78 -0.6
809,151 + MPMX19_03417 0.78 -0.3
809,151 + MPMX19_03417 0.78 -1.0
809,151 + MPMX19_03417 0.78 -0.6
809,151 + MPMX19_03417 0.78 -2.6
809,152 - MPMX19_03417 0.78 -1.3
809,152 - MPMX19_03417 0.78 +0.3
809,152 - MPMX19_03417 0.78 -0.2
809,152 - MPMX19_03417 0.78 -2.0
809,152 - MPMX19_03417 0.78 -1.1
809,152 - MPMX19_03417 0.78 -1.1
809,565 + -0.3
809,565 + -1.5
809,565 + -0.6
809,565 + -0.7
809,565 + -0.3
809,565 + -0.0
809,565 + +0.2
809,566 - -0.6
809,566 - -0.9
809,566 - -1.0
809,566 - +1.0
809,566 - -1.3
809,566 - -1.0
809,566 - -0.2
809,643 + +0.6
809,644 - -1.2
809,644 - -0.8
809,644 - -0.3
809,644 - +1.4
809,644 - -0.1
810,017 + MPMX19_03418 0.27 -1.2
810,017 + MPMX19_03418 0.27 +2.0
810,018 - MPMX19_03418 0.27 -0.8
810,387 - MPMX19_03418 0.63 -0.0
810,422 + MPMX19_03418 0.66 -0.2
810,422 + MPMX19_03418 0.66 -1.2
810,422 + MPMX19_03418 0.66 +0.1
810,422 + MPMX19_03418 0.66 -0.6
810,422 + MPMX19_03418 0.66 -0.2
810,423 - MPMX19_03418 0.66 +0.4
810,423 - MPMX19_03418 0.66 -0.3
810,423 - MPMX19_03418 0.66 -0.9
810,423 - MPMX19_03418 0.66 -0.9
810,423 - MPMX19_03418 0.66 -0.0
810,423 - MPMX19_03418 0.66 -1.2
810,423 - MPMX19_03418 0.66 +0.6
810,423 - MPMX19_03418 0.66 +1.0
810,485 + MPMX19_03418 0.72 -0.5
810,485 + MPMX19_03418 0.72 -1.1
810,485 + MPMX19_03418 0.72 -0.2
810,485 + MPMX19_03418 0.72 +0.8
810,485 + MPMX19_03418 0.72 -0.7
810,485 + MPMX19_03418 0.72 +0.5
810,486 - MPMX19_03418 0.72 -0.9
810,486 - MPMX19_03418 0.72 -1.6
810,486 - MPMX19_03418 0.72 -0.8
810,486 - MPMX19_03418 0.72 +1.3
810,486 - MPMX19_03418 0.72 -0.0
810,486 - MPMX19_03418 0.72 +0.2
810,486 - MPMX19_03418 0.72 +0.1
810,841 + -0.6
810,841 + +1.6
810,841 + -1.7
810,842 - -1.5
810,842 - +1.1
811,045 + MPMX19_03419 0.17 -1.9
811,045 + MPMX19_03419 0.17 -1.6
811,045 + MPMX19_03419 0.17 +0.3
811,045 + MPMX19_03419 0.17 -0.0
811,045 + MPMX19_03419 0.17 -0.5
811,046 - MPMX19_03419 0.17 -0.3
811,046 - MPMX19_03419 0.17 -0.8
811,046 - MPMX19_03419 0.17 -0.7
811,046 - MPMX19_03419 0.17 +0.4
811,046 - MPMX19_03419 0.17 -0.7
811,046 - MPMX19_03419 0.17 +1.0
811,046 - MPMX19_03419 0.17 +0.3
811,345 + MPMX19_03419 0.34 +0.5
811,345 + MPMX19_03419 0.34 -0.2
811,345 + MPMX19_03419 0.34 +0.7
811,345 + MPMX19_03419 0.34 -0.3
811,346 - MPMX19_03419 0.34 +0.8
811,456 + MPMX19_03419 0.40 -0.8
811,456 + MPMX19_03419 0.40 -1.6
811,456 + MPMX19_03419 0.40 -0.2
811,456 + MPMX19_03419 0.40 -0.2
811,456 + MPMX19_03419 0.40 -0.0
811,456 + MPMX19_03419 0.40 -1.7
811,456 + MPMX19_03419 0.40 -1.3
811,456 + MPMX19_03419 0.40 -2.0
811,456 + MPMX19_03419 0.40 +0.6
811,456 + MPMX19_03419 0.40 -1.7
811,456 + MPMX19_03419 0.40 +0.4
811,456 + MPMX19_03419 0.40 -0.0
811,456 + MPMX19_03419 0.40 +0.5
811,456 + MPMX19_03419 0.40 +0.6
811,456 + MPMX19_03419 0.40 -1.0
811,456 + MPMX19_03419 0.40 -1.1
811,456 + MPMX19_03419 0.40 -1.5
811,456 + MPMX19_03419 0.40 -0.6
811,456 + MPMX19_03419 0.40 +0.6
811,456 + MPMX19_03419 0.40 -1.6
811,457 - MPMX19_03419 0.40 -1.2
811,457 - MPMX19_03419 0.40 +0.6
811,457 - MPMX19_03419 0.40 -2.2
811,457 - MPMX19_03419 0.40 +0.5
811,457 - MPMX19_03419 0.40 +1.0
811,457 - MPMX19_03419 0.40 -0.1
811,457 - MPMX19_03419 0.40 +1.0
811,457 - MPMX19_03419 0.40 -0.3
811,555 + MPMX19_03419 0.45 +0.7
811,741 + MPMX19_03419 0.56 +0.3
811,742 - MPMX19_03419 0.56 +0.1
811,771 + MPMX19_03419 0.57 -1.4
811,771 + MPMX19_03419 0.57 -1.0
811,771 + MPMX19_03419 0.57 +0.2
811,771 + MPMX19_03419 0.57 +1.0
811,772 - MPMX19_03419 0.58 +0.4

Or see this region's nucleotide sequence