Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03417

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03416 and MPMX19_03417 are separated by 52 nucleotidesMPMX19_03417 and MPMX19_03418 overlap by 4 nucleotides MPMX19_03416: MPMX19_03416 - Actin cross-linking toxin VgrG1, at 804,919 to 807,036 _03416 MPMX19_03417: MPMX19_03417 - Protein ClpV1, at 807,089 to 809,740 _03417 MPMX19_03418: MPMX19_03418 - hypothetical protein, at 809,737 to 810,774 _03418 MPMX19_03419: MPMX19_03419 - hypothetical protein, at 810,738 to 812,534 _03419 Position (kb) 807 808 809 810Strain fitness (log2 ratio) -2 -1 0 1 2at 806.258 kb on + strand, within MPMX19_03416at 806.258 kb on + strand, within MPMX19_03416at 806.258 kb on + strand, within MPMX19_03416at 806.258 kb on + strand, within MPMX19_03416at 806.258 kb on + strand, within MPMX19_03416at 806.258 kb on + strand, within MPMX19_03416at 806.258 kb on + strand, within MPMX19_03416at 806.259 kb on - strand, within MPMX19_03416at 806.259 kb on - strand, within MPMX19_03416at 806.259 kb on - strand, within MPMX19_03416at 806.259 kb on - strand, within MPMX19_03416at 806.303 kb on + strand, within MPMX19_03416at 806.303 kb on + strand, within MPMX19_03416at 806.333 kb on + strand, within MPMX19_03416at 806.333 kb on + strand, within MPMX19_03416at 806.333 kb on + strand, within MPMX19_03416at 806.333 kb on + strand, within MPMX19_03416at 806.333 kb on + strand, within MPMX19_03416at 806.333 kb on + strand, within MPMX19_03416at 806.333 kb on + strand, within MPMX19_03416at 806.333 kb on + strand, within MPMX19_03416at 806.333 kb on + strand, within MPMX19_03416at 806.333 kb on + strand, within MPMX19_03416at 806.333 kb on + strand, within MPMX19_03416at 806.334 kb on - strand, within MPMX19_03416at 806.334 kb on - strand, within MPMX19_03416at 806.334 kb on - strand, within MPMX19_03416at 806.334 kb on - strand, within MPMX19_03416at 806.334 kb on - strand, within MPMX19_03416at 806.334 kb on - strand, within MPMX19_03416at 806.334 kb on - strand, within MPMX19_03416at 806.334 kb on - strand, within MPMX19_03416at 806.334 kb on - strand, within MPMX19_03416at 806.334 kb on - strand, within MPMX19_03416at 806.334 kb on - strand, within MPMX19_03416at 806.334 kb on - strand, within MPMX19_03416at 806.334 kb on - strand, within MPMX19_03416at 806.334 kb on - strand, within MPMX19_03416at 806.334 kb on - strand, within MPMX19_03416at 806.334 kb on - strand, within MPMX19_03416at 806.411 kb on + strand, within MPMX19_03416at 806.435 kb on + strand, within MPMX19_03416at 806.435 kb on + strand, within MPMX19_03416at 806.435 kb on + strand, within MPMX19_03416at 806.435 kb on + strand, within MPMX19_03416at 806.436 kb on - strand, within MPMX19_03416at 806.436 kb on - strand, within MPMX19_03416at 806.436 kb on - strand, within MPMX19_03416at 806.436 kb on - strand, within MPMX19_03416at 806.522 kb on + strand, within MPMX19_03416at 806.564 kb on + strand, within MPMX19_03416at 806.564 kb on + strand, within MPMX19_03416at 806.565 kb on - strand, within MPMX19_03416at 806.565 kb on - strand, within MPMX19_03416at 806.606 kb on + strand, within MPMX19_03416at 806.606 kb on + strand, within MPMX19_03416at 806.606 kb on + strand, within MPMX19_03416at 806.606 kb on + strand, within MPMX19_03416at 806.606 kb on + strand, within MPMX19_03416at 806.606 kb on + strand, within MPMX19_03416at 806.607 kb on - strand, within MPMX19_03416at 806.607 kb on - strand, within MPMX19_03416at 806.607 kb on - strand, within MPMX19_03416at 806.748 kb on - strand, within MPMX19_03416at 806.813 kb on + strand, within MPMX19_03416at 806.814 kb on - strand, within MPMX19_03416at 806.814 kb on - strand, within MPMX19_03416at 806.919 kb on - strandat 807.251 kb on - strandat 807.251 kb on - strandat 807.408 kb on + strand, within MPMX19_03417at 807.409 kb on - strand, within MPMX19_03417at 807.411 kb on + strand, within MPMX19_03417at 807.411 kb on + strand, within MPMX19_03417at 807.412 kb on - strand, within MPMX19_03417at 807.412 kb on - strand, within MPMX19_03417at 807.412 kb on - strand, within MPMX19_03417at 807.648 kb on + strand, within MPMX19_03417at 807.648 kb on + strand, within MPMX19_03417at 807.648 kb on + strand, within MPMX19_03417at 807.648 kb on + strand, within MPMX19_03417at 807.648 kb on + strand, within MPMX19_03417at 807.648 kb on + strand, within MPMX19_03417at 807.648 kb on + strand, within MPMX19_03417at 807.648 kb on + strand, within MPMX19_03417at 807.648 kb on + strand, within MPMX19_03417at 807.648 kb on + strand, within MPMX19_03417at 807.648 kb on + strand, within MPMX19_03417at 807.648 kb on + strand, within MPMX19_03417at 807.649 kb on - strand, within MPMX19_03417at 807.649 kb on - strand, within MPMX19_03417at 807.649 kb on - strand, within MPMX19_03417at 807.649 kb on - strand, within MPMX19_03417at 807.649 kb on - strand, within MPMX19_03417at 807.649 kb on - strand, within MPMX19_03417at 807.649 kb on - strand, within MPMX19_03417at 807.649 kb on - strand, within MPMX19_03417at 807.649 kb on - strand, within MPMX19_03417at 807.649 kb on - strand, within MPMX19_03417at 807.649 kb on - strand, within MPMX19_03417at 807.649 kb on - strand, within MPMX19_03417at 807.762 kb on + strand, within MPMX19_03417at 807.762 kb on + strand, within MPMX19_03417at 807.762 kb on + strand, within MPMX19_03417at 807.762 kb on + strand, within MPMX19_03417at 807.763 kb on - strand, within MPMX19_03417at 807.763 kb on - strand, within MPMX19_03417at 807.763 kb on - strand, within MPMX19_03417at 807.810 kb on + strand, within MPMX19_03417at 807.811 kb on - strand, within MPMX19_03417at 807.811 kb on - strand, within MPMX19_03417at 808.187 kb on + strand, within MPMX19_03417at 808.188 kb on - strand, within MPMX19_03417at 808.188 kb on - strand, within MPMX19_03417at 808.503 kb on + strand, within MPMX19_03417at 808.503 kb on + strand, within MPMX19_03417at 808.504 kb on - strand, within MPMX19_03417at 808.504 kb on - strand, within MPMX19_03417at 808.504 kb on - strand, within MPMX19_03417at 808.677 kb on + strand, within MPMX19_03417at 808.677 kb on + strand, within MPMX19_03417at 808.677 kb on + strand, within MPMX19_03417at 808.678 kb on - strand, within MPMX19_03417at 808.678 kb on - strand, within MPMX19_03417at 808.678 kb on - strand, within MPMX19_03417at 808.678 kb on - strand, within MPMX19_03417at 808.686 kb on + strand, within MPMX19_03417at 808.686 kb on + strand, within MPMX19_03417at 808.686 kb on + strand, within MPMX19_03417at 808.686 kb on + strand, within MPMX19_03417at 809.081 kb on + strand, within MPMX19_03417at 809.081 kb on + strand, within MPMX19_03417at 809.082 kb on - strand, within MPMX19_03417at 809.082 kb on - strand, within MPMX19_03417at 809.082 kb on - strand, within MPMX19_03417at 809.151 kb on + strand, within MPMX19_03417at 809.151 kb on + strand, within MPMX19_03417at 809.151 kb on + strand, within MPMX19_03417at 809.151 kb on + strand, within MPMX19_03417at 809.151 kb on + strand, within MPMX19_03417at 809.151 kb on + strand, within MPMX19_03417at 809.151 kb on + strand, within MPMX19_03417at 809.152 kb on - strand, within MPMX19_03417at 809.152 kb on - strand, within MPMX19_03417at 809.152 kb on - strand, within MPMX19_03417at 809.152 kb on - strand, within MPMX19_03417at 809.152 kb on - strand, within MPMX19_03417at 809.152 kb on - strand, within MPMX19_03417at 809.565 kb on + strandat 809.565 kb on + strandat 809.565 kb on + strandat 809.565 kb on + strandat 809.565 kb on + strandat 809.565 kb on + strandat 809.565 kb on + strandat 809.566 kb on - strandat 809.566 kb on - strandat 809.566 kb on - strandat 809.566 kb on - strandat 809.566 kb on - strandat 809.566 kb on - strandat 809.566 kb on - strandat 809.643 kb on + strandat 809.644 kb on - strandat 809.644 kb on - strandat 809.644 kb on - strandat 809.644 kb on - strandat 809.644 kb on - strandat 810.017 kb on + strand, within MPMX19_03418at 810.017 kb on + strand, within MPMX19_03418at 810.018 kb on - strand, within MPMX19_03418at 810.387 kb on - strand, within MPMX19_03418at 810.422 kb on + strand, within MPMX19_03418at 810.422 kb on + strand, within MPMX19_03418at 810.422 kb on + strand, within MPMX19_03418at 810.422 kb on + strand, within MPMX19_03418at 810.422 kb on + strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.423 kb on - strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.485 kb on + strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418at 810.486 kb on - strand, within MPMX19_03418

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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806,258 + MPMX19_03416 0.63 +0.4
806,258 + MPMX19_03416 0.63 -1.1
806,258 + MPMX19_03416 0.63 -0.6
806,258 + MPMX19_03416 0.63 +0.5
806,258 + MPMX19_03416 0.63 -1.1
806,258 + MPMX19_03416 0.63 +1.0
806,258 + MPMX19_03416 0.63 +1.4
806,259 - MPMX19_03416 0.63 +0.2
806,259 - MPMX19_03416 0.63 -1.6
806,259 - MPMX19_03416 0.63 +0.3
806,259 - MPMX19_03416 0.63 -0.8
806,303 + MPMX19_03416 0.65 -0.1
806,303 + MPMX19_03416 0.65 +1.0
806,333 + MPMX19_03416 0.67 -1.6
806,333 + MPMX19_03416 0.67 -0.5
806,333 + MPMX19_03416 0.67 -1.0
806,333 + MPMX19_03416 0.67 -0.6
806,333 + MPMX19_03416 0.67 -0.6
806,333 + MPMX19_03416 0.67 +0.3
806,333 + MPMX19_03416 0.67 -0.2
806,333 + MPMX19_03416 0.67 -0.3
806,333 + MPMX19_03416 0.67 +0.5
806,333 + MPMX19_03416 0.67 -1.9
806,333 + MPMX19_03416 0.67 +0.2
806,334 - MPMX19_03416 0.67 -1.2
806,334 - MPMX19_03416 0.67 -0.2
806,334 - MPMX19_03416 0.67 -2.5
806,334 - MPMX19_03416 0.67 -1.1
806,334 - MPMX19_03416 0.67 +1.0
806,334 - MPMX19_03416 0.67 -0.7
806,334 - MPMX19_03416 0.67 -0.4
806,334 - MPMX19_03416 0.67 +1.0
806,334 - MPMX19_03416 0.67 -2.2
806,334 - MPMX19_03416 0.67 -1.7
806,334 - MPMX19_03416 0.67 -0.3
806,334 - MPMX19_03416 0.67 +0.1
806,334 - MPMX19_03416 0.67 -0.6
806,334 - MPMX19_03416 0.67 -1.4
806,334 - MPMX19_03416 0.67 -0.1
806,334 - MPMX19_03416 0.67 -1.3
806,411 + MPMX19_03416 0.70 -1.6
806,435 + MPMX19_03416 0.72 -2.2
806,435 + MPMX19_03416 0.72 -0.2
806,435 + MPMX19_03416 0.72 -0.4
806,435 + MPMX19_03416 0.72 -1.2
806,436 - MPMX19_03416 0.72 -0.4
806,436 - MPMX19_03416 0.72 -1.3
806,436 - MPMX19_03416 0.72 -0.2
806,436 - MPMX19_03416 0.72 +0.2
806,522 + MPMX19_03416 0.76 -2.3
806,564 + MPMX19_03416 0.78 -1.5
806,564 + MPMX19_03416 0.78 -0.7
806,565 - MPMX19_03416 0.78 -1.5
806,565 - MPMX19_03416 0.78 +0.4
806,606 + MPMX19_03416 0.80 -0.9
806,606 + MPMX19_03416 0.80 -0.5
806,606 + MPMX19_03416 0.80 +1.3
806,606 + MPMX19_03416 0.80 +1.3
806,606 + MPMX19_03416 0.80 -1.0
806,606 + MPMX19_03416 0.80 -2.2
806,607 - MPMX19_03416 0.80 +1.0
806,607 - MPMX19_03416 0.80 -1.2
806,607 - MPMX19_03416 0.80 -0.2
806,748 - MPMX19_03416 0.86 -0.5
806,813 + MPMX19_03416 0.89 -0.0
806,814 - MPMX19_03416 0.89 +0.9
806,814 - MPMX19_03416 0.89 -0.6
806,919 - -0.4
807,251 - +1.0
807,251 - -1.3
807,408 + MPMX19_03417 0.12 -0.4
807,409 - MPMX19_03417 0.12 -0.9
807,411 + MPMX19_03417 0.12 -0.5
807,411 + MPMX19_03417 0.12 +0.2
807,412 - MPMX19_03417 0.12 +0.7
807,412 - MPMX19_03417 0.12 -1.8
807,412 - MPMX19_03417 0.12 -1.3
807,648 + MPMX19_03417 0.21 -2.6
807,648 + MPMX19_03417 0.21 +0.4
807,648 + MPMX19_03417 0.21 -1.0
807,648 + MPMX19_03417 0.21 +0.1
807,648 + MPMX19_03417 0.21 +0.6
807,648 + MPMX19_03417 0.21 +0.4
807,648 + MPMX19_03417 0.21 -0.1
807,648 + MPMX19_03417 0.21 +0.8
807,648 + MPMX19_03417 0.21 -0.0
807,648 + MPMX19_03417 0.21 -0.8
807,648 + MPMX19_03417 0.21 -1.1
807,648 + MPMX19_03417 0.21 -0.4
807,649 - MPMX19_03417 0.21 +0.9
807,649 - MPMX19_03417 0.21 +0.3
807,649 - MPMX19_03417 0.21 +0.2
807,649 - MPMX19_03417 0.21 -0.2
807,649 - MPMX19_03417 0.21 -0.5
807,649 - MPMX19_03417 0.21 -0.5
807,649 - MPMX19_03417 0.21 -0.1
807,649 - MPMX19_03417 0.21 -0.8
807,649 - MPMX19_03417 0.21 -1.5
807,649 - MPMX19_03417 0.21 -2.2
807,649 - MPMX19_03417 0.21 +0.8
807,649 - MPMX19_03417 0.21 -1.6
807,762 + MPMX19_03417 0.25 -1.5
807,762 + MPMX19_03417 0.25 +1.0
807,762 + MPMX19_03417 0.25 -0.7
807,762 + MPMX19_03417 0.25 -0.9
807,763 - MPMX19_03417 0.25 +2.0
807,763 - MPMX19_03417 0.25 -1.4
807,763 - MPMX19_03417 0.25 +0.6
807,810 + MPMX19_03417 0.27 -1.2
807,811 - MPMX19_03417 0.27 +1.0
807,811 - MPMX19_03417 0.27 -0.8
808,187 + MPMX19_03417 0.41 -0.8
808,188 - MPMX19_03417 0.41 -1.0
808,188 - MPMX19_03417 0.41 -0.3
808,503 + MPMX19_03417 0.53 -0.2
808,503 + MPMX19_03417 0.53 -0.7
808,504 - MPMX19_03417 0.53 -0.6
808,504 - MPMX19_03417 0.53 -0.8
808,504 - MPMX19_03417 0.53 +1.6
808,677 + MPMX19_03417 0.60 -1.0
808,677 + MPMX19_03417 0.60 +0.2
808,677 + MPMX19_03417 0.60 -1.7
808,678 - MPMX19_03417 0.60 -0.9
808,678 - MPMX19_03417 0.60 -2.3
808,678 - MPMX19_03417 0.60 -1.6
808,678 - MPMX19_03417 0.60 +1.0
808,686 + MPMX19_03417 0.60 -0.6
808,686 + MPMX19_03417 0.60 +0.2
808,686 + MPMX19_03417 0.60 -1.5
808,686 + MPMX19_03417 0.60 -1.8
809,081 + MPMX19_03417 0.75 -0.2
809,081 + MPMX19_03417 0.75 +0.3
809,082 - MPMX19_03417 0.75 -0.8
809,082 - MPMX19_03417 0.75 -1.2
809,082 - MPMX19_03417 0.75 -0.9
809,151 + MPMX19_03417 0.78 -1.7
809,151 + MPMX19_03417 0.78 -0.2
809,151 + MPMX19_03417 0.78 -0.6
809,151 + MPMX19_03417 0.78 -0.3
809,151 + MPMX19_03417 0.78 -1.0
809,151 + MPMX19_03417 0.78 -0.6
809,151 + MPMX19_03417 0.78 -2.6
809,152 - MPMX19_03417 0.78 -1.3
809,152 - MPMX19_03417 0.78 +0.3
809,152 - MPMX19_03417 0.78 -0.2
809,152 - MPMX19_03417 0.78 -2.0
809,152 - MPMX19_03417 0.78 -1.1
809,152 - MPMX19_03417 0.78 -1.1
809,565 + -0.3
809,565 + -1.5
809,565 + -0.6
809,565 + -0.7
809,565 + -0.3
809,565 + -0.0
809,565 + +0.2
809,566 - -0.6
809,566 - -0.9
809,566 - -1.0
809,566 - +1.0
809,566 - -1.3
809,566 - -1.0
809,566 - -0.2
809,643 + +0.6
809,644 - -1.2
809,644 - -0.8
809,644 - -0.3
809,644 - +1.4
809,644 - -0.1
810,017 + MPMX19_03418 0.27 -1.2
810,017 + MPMX19_03418 0.27 +2.0
810,018 - MPMX19_03418 0.27 -0.8
810,387 - MPMX19_03418 0.63 -0.0
810,422 + MPMX19_03418 0.66 -0.2
810,422 + MPMX19_03418 0.66 -1.2
810,422 + MPMX19_03418 0.66 +0.1
810,422 + MPMX19_03418 0.66 -0.6
810,422 + MPMX19_03418 0.66 -0.2
810,423 - MPMX19_03418 0.66 +0.4
810,423 - MPMX19_03418 0.66 -0.3
810,423 - MPMX19_03418 0.66 -0.9
810,423 - MPMX19_03418 0.66 -0.9
810,423 - MPMX19_03418 0.66 -0.0
810,423 - MPMX19_03418 0.66 -1.2
810,423 - MPMX19_03418 0.66 +0.6
810,423 - MPMX19_03418 0.66 +1.0
810,485 + MPMX19_03418 0.72 -0.5
810,485 + MPMX19_03418 0.72 -1.1
810,485 + MPMX19_03418 0.72 -0.2
810,485 + MPMX19_03418 0.72 +0.8
810,485 + MPMX19_03418 0.72 -0.7
810,485 + MPMX19_03418 0.72 +0.5
810,486 - MPMX19_03418 0.72 -0.9
810,486 - MPMX19_03418 0.72 -1.6
810,486 - MPMX19_03418 0.72 -0.8
810,486 - MPMX19_03418 0.72 +1.3
810,486 - MPMX19_03418 0.72 -0.0
810,486 - MPMX19_03418 0.72 +0.2
810,486 - MPMX19_03418 0.72 +0.1

Or see this region's nucleotide sequence