Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03402

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03401 and MPMX19_03402 are separated by 1 nucleotidesMPMX19_03402 and MPMX19_03403 are separated by 1 nucleotides MPMX19_03401: MPMX19_03401 - putative ABC transporter ATP-binding protein, at 787,039 to 789,180 _03401 MPMX19_03402: MPMX19_03402 - putative D,D-dipeptide transport system permease protein DdpC, at 789,182 to 790,066 _03402 MPMX19_03403: MPMX19_03403 - Glutathione transport system permease protein GsiC, at 790,068 to 791,024 _03403 Position (kb) 789 790 791Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 788.366 kb on + strand, within MPMX19_03401at 788.366 kb on + strand, within MPMX19_03401at 788.367 kb on - strand, within MPMX19_03401at 788.367 kb on - strand, within MPMX19_03401at 788.367 kb on - strand, within MPMX19_03401at 788.367 kb on - strand, within MPMX19_03401at 788.430 kb on - strand, within MPMX19_03401at 789.074 kb on + strandat 789.074 kb on + strandat 789.074 kb on + strandat 789.074 kb on + strandat 789.074 kb on + strandat 789.075 kb on - strandat 789.075 kb on - strandat 789.477 kb on + strand, within MPMX19_03402at 789.477 kb on + strand, within MPMX19_03402at 789.477 kb on + strand, within MPMX19_03402at 789.477 kb on + strand, within MPMX19_03402at 789.477 kb on + strand, within MPMX19_03402at 789.477 kb on + strand, within MPMX19_03402at 789.477 kb on + strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.717 kb on + strand, within MPMX19_03402at 789.717 kb on + strand, within MPMX19_03402at 789.717 kb on + strand, within MPMX19_03402at 789.718 kb on - strand, within MPMX19_03402at 789.740 kb on + strand, within MPMX19_03402at 789.903 kb on + strand, within MPMX19_03402at 789.903 kb on + strand, within MPMX19_03402at 789.903 kb on + strand, within MPMX19_03402at 789.903 kb on + strand, within MPMX19_03402at 789.904 kb on - strand, within MPMX19_03402at 789.904 kb on - strand, within MPMX19_03402at 789.904 kb on - strand, within MPMX19_03402at 789.904 kb on - strand, within MPMX19_03402at 789.904 kb on - strand, within MPMX19_03402at 789.904 kb on - strand, within MPMX19_03402at 789.904 kb on - strand, within MPMX19_03402at 789.910 kb on - strand, within MPMX19_03402at 790.114 kb on + strandat 790.114 kb on + strandat 790.114 kb on + strandat 790.115 kb on - strandat 790.115 kb on - strandat 790.115 kb on - strandat 790.115 kb on - strandat 790.115 kb on - strandat 790.115 kb on - strandat 790.115 kb on - strandat 790.115 kb on - strandat 790.115 kb on - strandat 790.147 kb on + strandat 790.148 kb on - strandat 790.238 kb on - strand, within MPMX19_03403at 790.390 kb on + strand, within MPMX19_03403at 790.390 kb on + strand, within MPMX19_03403at 790.390 kb on + strand, within MPMX19_03403at 790.390 kb on + strand, within MPMX19_03403at 790.390 kb on + strand, within MPMX19_03403at 790.390 kb on + strand, within MPMX19_03403at 790.390 kb on + strand, within MPMX19_03403at 790.390 kb on + strand, within MPMX19_03403at 790.390 kb on + strand, within MPMX19_03403at 790.390 kb on + strand, within MPMX19_03403at 790.391 kb on - strand, within MPMX19_03403at 790.391 kb on - strand, within MPMX19_03403at 790.391 kb on - strand, within MPMX19_03403at 790.391 kb on - strand, within MPMX19_03403at 790.391 kb on - strand, within MPMX19_03403at 790.391 kb on - strand, within MPMX19_03403at 790.391 kb on - strand, within MPMX19_03403at 790.391 kb on - strand, within MPMX19_03403at 790.391 kb on - strand, within MPMX19_03403at 790.525 kb on + strand, within MPMX19_03403at 790.552 kb on + strand, within MPMX19_03403at 790.552 kb on + strand, within MPMX19_03403at 790.552 kb on + strand, within MPMX19_03403at 790.552 kb on + strand, within MPMX19_03403at 790.552 kb on + strand, within MPMX19_03403at 790.552 kb on + strand, within MPMX19_03403at 790.552 kb on + strand, within MPMX19_03403at 790.552 kb on + strand, within MPMX19_03403at 790.552 kb on + strand, within MPMX19_03403at 790.552 kb on + strand, within MPMX19_03403at 790.553 kb on - strand, within MPMX19_03403at 790.553 kb on - strand, within MPMX19_03403at 790.553 kb on - strand, within MPMX19_03403at 790.553 kb on - strand, within MPMX19_03403at 790.553 kb on - strand, within MPMX19_03403at 790.553 kb on - strand, within MPMX19_03403at 790.553 kb on - strand, within MPMX19_03403at 790.553 kb on - strand, within MPMX19_03403at 790.553 kb on - strand, within MPMX19_03403at 790.615 kb on + strand, within MPMX19_03403at 790.615 kb on + strand, within MPMX19_03403at 790.831 kb on + strand, within MPMX19_03403at 790.993 kb on + strandat 790.993 kb on + strandat 790.993 kb on + strandat 790.993 kb on + strandat 790.994 kb on - strandat 790.994 kb on - strandat 791.014 kb on + strandat 791.015 kb on - strandat 791.015 kb on - strandat 791.015 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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788,366 + MPMX19_03401 0.62 +0.2
788,366 + MPMX19_03401 0.62 -2.1
788,367 - MPMX19_03401 0.62 -0.2
788,367 - MPMX19_03401 0.62 -1.5
788,367 - MPMX19_03401 0.62 -0.2
788,367 - MPMX19_03401 0.62 -0.6
788,430 - MPMX19_03401 0.65 -1.0
789,074 + +0.8
789,074 + -0.7
789,074 + -1.0
789,074 + +0.4
789,074 + -2.2
789,075 - +1.0
789,075 - +0.2
789,477 + MPMX19_03402 0.33 -0.6
789,477 + MPMX19_03402 0.33 -0.8
789,477 + MPMX19_03402 0.33 -2.5
789,477 + MPMX19_03402 0.33 -1.2
789,477 + MPMX19_03402 0.33 +0.2
789,477 + MPMX19_03402 0.33 -0.3
789,477 + MPMX19_03402 0.33 +0.8
789,478 - MPMX19_03402 0.33 -0.9
789,478 - MPMX19_03402 0.33 -1.5
789,478 - MPMX19_03402 0.33 -0.4
789,478 - MPMX19_03402 0.33 -0.6
789,478 - MPMX19_03402 0.33 +0.3
789,478 - MPMX19_03402 0.33 +0.4
789,478 - MPMX19_03402 0.33 -1.6
789,478 - MPMX19_03402 0.33 -0.4
789,478 - MPMX19_03402 0.33 +1.6
789,478 - MPMX19_03402 0.33 -0.7
789,478 - MPMX19_03402 0.33 +0.8
789,478 - MPMX19_03402 0.33 -1.0
789,576 + MPMX19_03402 0.45 -0.9
789,576 + MPMX19_03402 0.45 +0.4
789,576 + MPMX19_03402 0.45 +0.7
789,576 + MPMX19_03402 0.45 -0.2
789,576 + MPMX19_03402 0.45 -0.0
789,576 + MPMX19_03402 0.45 -1.5
789,576 + MPMX19_03402 0.45 +0.4
789,576 + MPMX19_03402 0.45 -1.5
789,576 + MPMX19_03402 0.45 -1.0
789,576 + MPMX19_03402 0.45 -0.1
789,576 + MPMX19_03402 0.45 -1.3
789,576 + MPMX19_03402 0.45 -1.0
789,576 + MPMX19_03402 0.45 -0.8
789,577 - MPMX19_03402 0.45 -1.2
789,577 - MPMX19_03402 0.45 -0.9
789,577 - MPMX19_03402 0.45 +1.0
789,577 - MPMX19_03402 0.45 -0.3
789,577 - MPMX19_03402 0.45 +0.2
789,577 - MPMX19_03402 0.45 +0.9
789,577 - MPMX19_03402 0.45 -0.0
789,577 - MPMX19_03402 0.45 -1.3
789,577 - MPMX19_03402 0.45 +0.9
789,577 - MPMX19_03402 0.45 +0.9
789,577 - MPMX19_03402 0.45 +0.1
789,717 + MPMX19_03402 0.60 +2.0
789,717 + MPMX19_03402 0.60 -1.3
789,717 + MPMX19_03402 0.60 -1.6
789,718 - MPMX19_03402 0.61 +0.5
789,740 + MPMX19_03402 0.63 -1.3
789,903 + MPMX19_03402 0.81 -2.2
789,903 + MPMX19_03402 0.81 -1.0
789,903 + MPMX19_03402 0.81 -0.4
789,903 + MPMX19_03402 0.81 -1.1
789,904 - MPMX19_03402 0.82 +0.2
789,904 - MPMX19_03402 0.82 -1.6
789,904 - MPMX19_03402 0.82 -0.6
789,904 - MPMX19_03402 0.82 -0.6
789,904 - MPMX19_03402 0.82 +0.2
789,904 - MPMX19_03402 0.82 +0.8
789,904 - MPMX19_03402 0.82 -1.7
789,910 - MPMX19_03402 0.82 +1.7
790,114 + +0.2
790,114 + +0.1
790,114 + -0.6
790,115 - -2.0
790,115 - -0.2
790,115 - -1.1
790,115 - +1.0
790,115 - -0.2
790,115 - -0.5
790,115 - -0.9
790,115 - +0.2
790,115 - -0.7
790,147 + -1.7
790,148 - +1.3
790,238 - MPMX19_03403 0.18 -0.9
790,390 + MPMX19_03403 0.34 -1.0
790,390 + MPMX19_03403 0.34 +0.1
790,390 + MPMX19_03403 0.34 +0.4
790,390 + MPMX19_03403 0.34 -1.2
790,390 + MPMX19_03403 0.34 -1.2
790,390 + MPMX19_03403 0.34 -1.4
790,390 + MPMX19_03403 0.34 -0.3
790,390 + MPMX19_03403 0.34 +0.6
790,390 + MPMX19_03403 0.34 +0.2
790,390 + MPMX19_03403 0.34 -0.9
790,391 - MPMX19_03403 0.34 +0.1
790,391 - MPMX19_03403 0.34 -0.2
790,391 - MPMX19_03403 0.34 +0.6
790,391 - MPMX19_03403 0.34 -0.3
790,391 - MPMX19_03403 0.34 -0.8
790,391 - MPMX19_03403 0.34 -1.2
790,391 - MPMX19_03403 0.34 -0.3
790,391 - MPMX19_03403 0.34 -0.8
790,391 - MPMX19_03403 0.34 -1.5
790,525 + MPMX19_03403 0.48 +0.2
790,552 + MPMX19_03403 0.51 -1.7
790,552 + MPMX19_03403 0.51 -0.3
790,552 + MPMX19_03403 0.51 +1.0
790,552 + MPMX19_03403 0.51 +0.8
790,552 + MPMX19_03403 0.51 -0.3
790,552 + MPMX19_03403 0.51 -1.1
790,552 + MPMX19_03403 0.51 -0.2
790,552 + MPMX19_03403 0.51 -1.4
790,552 + MPMX19_03403 0.51 +0.9
790,552 + MPMX19_03403 0.51 -0.7
790,553 - MPMX19_03403 0.51 -1.0
790,553 - MPMX19_03403 0.51 +0.4
790,553 - MPMX19_03403 0.51 -0.3
790,553 - MPMX19_03403 0.51 -0.0
790,553 - MPMX19_03403 0.51 -0.9
790,553 - MPMX19_03403 0.51 -0.0
790,553 - MPMX19_03403 0.51 -1.0
790,553 - MPMX19_03403 0.51 +1.0
790,553 - MPMX19_03403 0.51 -2.8
790,615 + MPMX19_03403 0.57 -1.7
790,615 + MPMX19_03403 0.57 +0.6
790,831 + MPMX19_03403 0.80 -0.8
790,993 + -0.4
790,993 + -0.6
790,993 + -0.2
790,993 + -1.4
790,994 - -0.8
790,994 - -0.6
791,014 + +0.4
791,015 - +0.1
791,015 - -0.0
791,015 - +1.4

Or see this region's nucleotide sequence