Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03374 and MPMX19_03375 overlap by 4 nucleotides MPMX19_03375 and MPMX19_03376 are separated by 136 nucleotides
MPMX19_03374: MPMX19_03374 - Alpha-hemolysin translocation ATP-binding protein HlyB, at 751,457 to 753,139
_03374
MPMX19_03375: MPMX19_03375 - Outer membrane protein TolC, at 753,136 to 754,560
_03375
MPMX19_03376: MPMX19_03376 - hypothetical protein, at 754,697 to 760,675
_03376
Position (kb) 753
754
755 Strain fitness (log2 ratio) -2
-1
0
1 at 752.154 kb on + strand, within MPMX19_03374 at 752.155 kb on - strand, within MPMX19_03374 at 752.155 kb on - strand, within MPMX19_03374 at 752.155 kb on - strand, within MPMX19_03374 at 752.997 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.021 kb on + strand at 753.022 kb on - strand at 753.022 kb on - strand at 753.022 kb on - strand at 753.022 kb on - strand at 753.022 kb on - strand at 753.022 kb on - strand at 753.022 kb on - strand at 753.022 kb on - strand at 753.713 kb on + strand, within MPMX19_03375 at 753.713 kb on + strand, within MPMX19_03375 at 753.714 kb on - strand, within MPMX19_03375 at 753.714 kb on - strand, within MPMX19_03375 at 753.714 kb on - strand, within MPMX19_03375 at 753.714 kb on - strand, within MPMX19_03375 at 753.732 kb on - strand, within MPMX19_03375 at 753.917 kb on + strand, within MPMX19_03375 at 753.917 kb on + strand, within MPMX19_03375 at 753.917 kb on + strand, within MPMX19_03375 at 753.917 kb on + strand, within MPMX19_03375 at 753.918 kb on - strand, within MPMX19_03375 at 753.918 kb on - strand, within MPMX19_03375 at 753.918 kb on - strand, within MPMX19_03375 at 754.018 kb on - strand, within MPMX19_03375 at 754.028 kb on + strand, within MPMX19_03375 at 754.133 kb on + strand, within MPMX19_03375 at 754.134 kb on - strand, within MPMX19_03375 at 754.134 kb on - strand, within MPMX19_03375 at 754.365 kb on - strand, within MPMX19_03375 at 754.554 kb on + strand at 754.554 kb on + strand at 754.555 kb on - strand at 754.555 kb on - strand at 754.555 kb on - strand at 754.555 kb on - strand at 754.555 kb on - strand at 754.555 kb on - strand at 754.595 kb on - strand at 754.595 kb on - strand at 754.595 kb on - strand at 754.620 kb on - strand at 754.620 kb on - strand at 754.633 kb on + strand at 754.633 kb on + strand at 754.634 kb on - strand at 754.634 kb on - strand at 754.634 kb on - strand at 754.635 kb on + strand at 754.635 kb on + strand at 754.635 kb on + strand at 754.636 kb on - strand at 754.636 kb on - strand at 754.636 kb on - strand at 754.636 kb on - strand at 754.643 kb on + strand at 754.669 kb on - strand at 754.671 kb on + strand at 754.671 kb on + strand at 754.698 kb on + strand at 754.712 kb on - strand at 754.729 kb on + strand at 754.729 kb on + strand at 754.817 kb on + strand at 754.817 kb on + strand at 754.817 kb on + strand at 754.817 kb on + strand at 754.817 kb on + strand at 754.818 kb on - strand at 754.820 kb on - strand at 754.820 kb on - strand at 754.820 kb on - strand at 754.820 kb on - strand at 754.820 kb on - strand at 755.092 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 752,154 + MPMX19_03374 0.41 -1.3 752,155 - MPMX19_03374 0.41 -0.5 752,155 - MPMX19_03374 0.41 -0.8 752,155 - MPMX19_03374 0.41 -1.2 752,997 + +0.4 753,021 + -2.2 753,021 + -0.8 753,021 + -0.2 753,021 + +0.4 753,021 + -1.2 753,021 + -0.2 753,021 + +0.7 753,021 + -0.1 753,021 + -2.1 753,021 + +0.0 753,021 + -0.5 753,021 + +0.8 753,022 - +0.1 753,022 - -1.4 753,022 - -0.6 753,022 - +0.7 753,022 - +0.2 753,022 - -1.3 753,022 - -1.0 753,022 - -2.1 753,713 + MPMX19_03375 0.40 +0.0 753,713 + MPMX19_03375 0.40 +1.3 753,714 - MPMX19_03375 0.41 +0.5 753,714 - MPMX19_03375 0.41 +0.5 753,714 - MPMX19_03375 0.41 -1.5 753,714 - MPMX19_03375 0.41 +0.4 753,732 - MPMX19_03375 0.42 +1.4 753,917 + MPMX19_03375 0.55 +0.5 753,917 + MPMX19_03375 0.55 +0.2 753,917 + MPMX19_03375 0.55 +1.1 753,917 + MPMX19_03375 0.55 -1.7 753,918 - MPMX19_03375 0.55 -0.3 753,918 - MPMX19_03375 0.55 +0.4 753,918 - MPMX19_03375 0.55 +0.1 754,018 - MPMX19_03375 0.62 -0.9 754,028 + MPMX19_03375 0.63 +0.9 754,133 + MPMX19_03375 0.70 -0.5 754,134 - MPMX19_03375 0.70 +1.0 754,134 - MPMX19_03375 0.70 -1.9 754,365 - MPMX19_03375 0.86 -0.3 754,554 + -1.9 754,554 + -0.5 754,555 - -1.2 754,555 - +0.3 754,555 - +0.0 754,555 - -0.2 754,555 - +0.7 754,555 - -1.4 754,595 - -0.2 754,595 - -0.6 754,595 - +0.2 754,620 - +0.4 754,620 - -0.6 754,633 + -0.6 754,633 + +0.6 754,634 - +0.4 754,634 - -0.3 754,634 - -0.5 754,635 + -0.6 754,635 + -1.5 754,635 + -0.7 754,636 - -0.3 754,636 - +1.0 754,636 - -1.0 754,636 - -0.6 754,643 + +0.5 754,669 - -2.4 754,671 + +1.2 754,671 + +0.7 754,698 + -1.2 754,712 - +0.7 754,729 + -1.2 754,729 + -0.5 754,817 + -1.1 754,817 + -1.6 754,817 + +0.4 754,817 + -0.1 754,817 + +0.3 754,818 - +0.0 754,820 - -0.8 754,820 - -1.9 754,820 - +0.4 754,820 - -1.2 754,820 - +0.4 755,092 + -0.3
Or see this region's nucleotide sequence