Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03364 and MPMX19_03365 are separated by 7 nucleotides MPMX19_03365 and MPMX19_03366 are separated by 8 nucleotides MPMX19_03366 and MPMX19_03367 are separated by 34 nucleotides MPMX19_03367 and MPMX19_03368 are separated by 390 nucleotides
MPMX19_03364: MPMX19_03364 - Vitamin B12 import ATP-binding protein BtuD, at 738,347 to 740,098
_03364
MPMX19_03365: MPMX19_03365 - hypothetical protein, at 740,106 to 740,864
_03365
MPMX19_03366: MPMX19_03366 - hypothetical protein, at 740,873 to 741,043
_03366
MPMX19_03367: MPMX19_03367 - Magnetosome membrane protein 22, at 741,078 to 741,581
_03367
MPMX19_03368: MPMX19_03368 - hypothetical protein, at 741,972 to 745,289
_03368
Position (kb) 741
742 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 740.221 kb on + strand, within MPMX19_03365 at 740.221 kb on + strand, within MPMX19_03365 at 740.222 kb on - strand, within MPMX19_03365 at 740.222 kb on - strand, within MPMX19_03365 at 740.222 kb on - strand, within MPMX19_03365 at 740.293 kb on + strand, within MPMX19_03365 at 740.293 kb on + strand, within MPMX19_03365 at 740.293 kb on + strand, within MPMX19_03365 at 740.293 kb on + strand, within MPMX19_03365 at 740.293 kb on + strand, within MPMX19_03365 at 740.293 kb on + strand, within MPMX19_03365 at 740.294 kb on - strand, within MPMX19_03365 at 740.294 kb on - strand, within MPMX19_03365 at 740.294 kb on - strand, within MPMX19_03365 at 740.294 kb on - strand, within MPMX19_03365 at 740.294 kb on - strand, within MPMX19_03365 at 740.294 kb on - strand, within MPMX19_03365 at 740.294 kb on - strand, within MPMX19_03365 at 740.294 kb on - strand, within MPMX19_03365 at 740.294 kb on - strand, within MPMX19_03365 at 740.392 kb on + strand, within MPMX19_03365 at 740.392 kb on + strand, within MPMX19_03365 at 740.392 kb on + strand, within MPMX19_03365 at 740.393 kb on - strand, within MPMX19_03365 at 740.393 kb on - strand, within MPMX19_03365 at 740.393 kb on - strand, within MPMX19_03365 at 740.393 kb on - strand, within MPMX19_03365 at 740.419 kb on + strand, within MPMX19_03365 at 740.419 kb on + strand, within MPMX19_03365 at 740.420 kb on - strand, within MPMX19_03365 at 740.420 kb on - strand, within MPMX19_03365 at 740.450 kb on - strand, within MPMX19_03365 at 740.545 kb on + strand, within MPMX19_03365 at 740.545 kb on + strand, within MPMX19_03365 at 740.545 kb on + strand, within MPMX19_03365 at 740.545 kb on + strand, within MPMX19_03365 at 740.545 kb on + strand, within MPMX19_03365 at 740.546 kb on - strand, within MPMX19_03365 at 740.546 kb on - strand, within MPMX19_03365 at 740.546 kb on - strand, within MPMX19_03365 at 740.546 kb on - strand, within MPMX19_03365 at 740.725 kb on + strand, within MPMX19_03365 at 740.725 kb on + strand, within MPMX19_03365 at 740.725 kb on + strand, within MPMX19_03365 at 740.725 kb on + strand, within MPMX19_03365 at 740.725 kb on + strand, within MPMX19_03365 at 740.725 kb on + strand, within MPMX19_03365 at 740.725 kb on + strand, within MPMX19_03365 at 740.725 kb on + strand, within MPMX19_03365 at 740.725 kb on + strand, within MPMX19_03365 at 740.725 kb on + strand, within MPMX19_03365 at 740.726 kb on - strand, within MPMX19_03365 at 740.726 kb on - strand, within MPMX19_03365 at 740.726 kb on - strand, within MPMX19_03365 at 740.731 kb on + strand, within MPMX19_03365 at 740.731 kb on + strand, within MPMX19_03365 at 740.732 kb on - strand, within MPMX19_03365 at 740.732 kb on - strand, within MPMX19_03365 at 740.767 kb on + strand, within MPMX19_03365 at 740.964 kb on + strand, within MPMX19_03366 at 740.964 kb on + strand, within MPMX19_03366 at 740.964 kb on + strand, within MPMX19_03366 at 740.964 kb on + strand, within MPMX19_03366 at 740.965 kb on - strand, within MPMX19_03366 at 740.965 kb on - strand, within MPMX19_03366 at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.027 kb on + strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.028 kb on - strand at 741.178 kb on + strand, within MPMX19_03367 at 741.179 kb on - strand, within MPMX19_03367 at 741.433 kb on + strand, within MPMX19_03367 at 741.433 kb on + strand, within MPMX19_03367 at 741.433 kb on + strand, within MPMX19_03367 at 741.434 kb on - strand, within MPMX19_03367 at 741.434 kb on - strand, within MPMX19_03367 at 741.434 kb on - strand, within MPMX19_03367 at 741.532 kb on + strand at 741.532 kb on + strand at 741.532 kb on + strand at 741.532 kb on + strand at 741.532 kb on + strand at 741.532 kb on + strand at 741.532 kb on + strand at 741.532 kb on + strand at 741.532 kb on + strand at 741.533 kb on - strand at 741.533 kb on - strand at 741.533 kb on - strand at 741.533 kb on - strand at 741.533 kb on - strand at 741.533 kb on - strand at 741.541 kb on + strand at 741.541 kb on + strand at 741.541 kb on + strand at 741.541 kb on + strand at 741.541 kb on + strand at 741.542 kb on - strand at 741.542 kb on - strand at 741.542 kb on - strand at 741.570 kb on - strand at 741.577 kb on - strand at 741.577 kb on - strand at 741.577 kb on - strand at 741.577 kb on - strand at 741.577 kb on - strand at 741.577 kb on - strand at 741.763 kb on - strand at 741.773 kb on - strand at 741.773 kb on - strand at 741.783 kb on - strand at 741.790 kb on - strand at 741.805 kb on + strand at 741.805 kb on + strand at 741.822 kb on - strand at 741.822 kb on - strand at 741.887 kb on + strand at 741.924 kb on + strand at 741.944 kb on + strand at 741.973 kb on + strand at 741.973 kb on + strand at 741.974 kb on - strand at 742.068 kb on - strand at 742.068 kb on - strand at 742.417 kb on + strand, within MPMX19_03368 at 742.417 kb on + strand, within MPMX19_03368 at 742.417 kb on + strand, within MPMX19_03368 at 742.417 kb on + strand, within MPMX19_03368 at 742.417 kb on + strand, within MPMX19_03368 at 742.417 kb on + strand, within MPMX19_03368 at 742.417 kb on + strand, within MPMX19_03368 at 742.418 kb on - strand, within MPMX19_03368 at 742.418 kb on - strand, within MPMX19_03368 at 742.418 kb on - strand, within MPMX19_03368 at 742.418 kb on - strand, within MPMX19_03368 at 742.418 kb on - strand, within MPMX19_03368 at 742.500 kb on - strand, within MPMX19_03368 at 742.500 kb on - strand, within MPMX19_03368 at 742.558 kb on + strand, within MPMX19_03368 at 742.558 kb on + strand, within MPMX19_03368 at 742.559 kb on - strand, within MPMX19_03368 at 742.559 kb on - strand, within MPMX19_03368
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 740,221 + MPMX19_03365 0.15 -1.1 740,221 + MPMX19_03365 0.15 +1.2 740,222 - MPMX19_03365 0.15 -1.3 740,222 - MPMX19_03365 0.15 +2.0 740,222 - MPMX19_03365 0.15 -0.7 740,293 + MPMX19_03365 0.25 +1.4 740,293 + MPMX19_03365 0.25 +0.6 740,293 + MPMX19_03365 0.25 -1.6 740,293 + MPMX19_03365 0.25 -0.0 740,293 + MPMX19_03365 0.25 -1.2 740,293 + MPMX19_03365 0.25 -0.3 740,294 - MPMX19_03365 0.25 -0.0 740,294 - MPMX19_03365 0.25 -0.0 740,294 - MPMX19_03365 0.25 +0.2 740,294 - MPMX19_03365 0.25 +0.3 740,294 - MPMX19_03365 0.25 +0.1 740,294 - MPMX19_03365 0.25 -1.3 740,294 - MPMX19_03365 0.25 -0.0 740,294 - MPMX19_03365 0.25 +0.5 740,294 - MPMX19_03365 0.25 -0.4 740,392 + MPMX19_03365 0.38 -1.0 740,392 + MPMX19_03365 0.38 -0.3 740,392 + MPMX19_03365 0.38 -0.6 740,393 - MPMX19_03365 0.38 +0.1 740,393 - MPMX19_03365 0.38 -0.8 740,393 - MPMX19_03365 0.38 -0.8 740,393 - MPMX19_03365 0.38 -0.6 740,419 + MPMX19_03365 0.41 -0.1 740,419 + MPMX19_03365 0.41 +1.0 740,420 - MPMX19_03365 0.41 -0.7 740,420 - MPMX19_03365 0.41 +0.3 740,450 - MPMX19_03365 0.45 +0.1 740,545 + MPMX19_03365 0.58 +0.4 740,545 + MPMX19_03365 0.58 -0.0 740,545 + MPMX19_03365 0.58 -0.2 740,545 + MPMX19_03365 0.58 -1.2 740,545 + MPMX19_03365 0.58 -2.2 740,546 - MPMX19_03365 0.58 -0.0 740,546 - MPMX19_03365 0.58 -1.2 740,546 - MPMX19_03365 0.58 -0.8 740,546 - MPMX19_03365 0.58 -0.0 740,725 + MPMX19_03365 0.82 -0.4 740,725 + MPMX19_03365 0.82 +0.3 740,725 + MPMX19_03365 0.82 -1.6 740,725 + MPMX19_03365 0.82 -0.0 740,725 + MPMX19_03365 0.82 -0.3 740,725 + MPMX19_03365 0.82 -0.3 740,725 + MPMX19_03365 0.82 -0.0 740,725 + MPMX19_03365 0.82 +0.7 740,725 + MPMX19_03365 0.82 -1.8 740,725 + MPMX19_03365 0.82 -0.2 740,726 - MPMX19_03365 0.82 -3.2 740,726 - MPMX19_03365 0.82 -0.2 740,726 - MPMX19_03365 0.82 -0.3 740,731 + MPMX19_03365 0.82 -1.1 740,731 + MPMX19_03365 0.82 -2.0 740,732 - MPMX19_03365 0.82 +0.5 740,732 - MPMX19_03365 0.82 -1.2 740,767 + MPMX19_03365 0.87 -0.3 740,964 + MPMX19_03366 0.53 +0.6 740,964 + MPMX19_03366 0.53 -2.1 740,964 + MPMX19_03366 0.53 -0.4 740,964 + MPMX19_03366 0.53 -1.0 740,965 - MPMX19_03366 0.54 -2.4 740,965 - MPMX19_03366 0.54 +0.7 741,027 + +0.2 741,027 + -2.1 741,027 + +0.4 741,027 + -1.2 741,027 + -0.4 741,027 + +1.0 741,027 + +0.3 741,027 + -2.1 741,027 + -1.1 741,027 + -1.2 741,027 + -0.8 741,027 + -2.1 741,028 - -1.5 741,028 - -0.7 741,028 - -1.6 741,028 - +1.0 741,028 - +0.2 741,028 - +1.3 741,028 - -0.5 741,028 - -0.6 741,028 - -1.5 741,028 - -0.3 741,028 - -0.8 741,178 + MPMX19_03367 0.20 -2.3 741,179 - MPMX19_03367 0.20 -1.3 741,433 + MPMX19_03367 0.70 -0.0 741,433 + MPMX19_03367 0.70 -1.0 741,433 + MPMX19_03367 0.70 -0.7 741,434 - MPMX19_03367 0.71 -2.8 741,434 - MPMX19_03367 0.71 -1.2 741,434 - MPMX19_03367 0.71 -0.3 741,532 + -0.7 741,532 + -0.6 741,532 + -1.0 741,532 + -1.8 741,532 + -0.2 741,532 + -0.5 741,532 + -1.3 741,532 + +1.3 741,532 + -2.1 741,533 - -0.8 741,533 - -1.2 741,533 - +0.2 741,533 - -1.6 741,533 - -2.0 741,533 - -0.0 741,541 + -1.0 741,541 + -0.0 741,541 + +1.0 741,541 + -0.7 741,541 + -0.5 741,542 - -0.9 741,542 - -1.8 741,542 - -0.3 741,570 - -0.6 741,577 - -1.3 741,577 - -0.6 741,577 - +0.8 741,577 - -0.0 741,577 - -0.8 741,577 - -0.8 741,763 - -2.0 741,773 - -0.6 741,773 - -1.1 741,783 - +0.6 741,790 - -1.9 741,805 + -1.1 741,805 + -1.3 741,822 - -0.0 741,822 - +1.0 741,887 + -0.9 741,924 + -1.5 741,944 + +0.5 741,973 + -2.3 741,973 + +0.7 741,974 - -0.0 742,068 - -0.8 742,068 - -0.0 742,417 + MPMX19_03368 0.13 +0.4 742,417 + MPMX19_03368 0.13 -1.8 742,417 + MPMX19_03368 0.13 -1.6 742,417 + MPMX19_03368 0.13 -2.3 742,417 + MPMX19_03368 0.13 -2.0 742,417 + MPMX19_03368 0.13 -1.0 742,417 + MPMX19_03368 0.13 -1.0 742,418 - MPMX19_03368 0.13 -1.3 742,418 - MPMX19_03368 0.13 +1.6 742,418 - MPMX19_03368 0.13 -0.4 742,418 - MPMX19_03368 0.13 +0.2 742,418 - MPMX19_03368 0.13 +0.3 742,500 - MPMX19_03368 0.16 -0.6 742,500 - MPMX19_03368 0.16 -0.3 742,558 + MPMX19_03368 0.18 -1.3 742,558 + MPMX19_03368 0.18 -1.4 742,559 - MPMX19_03368 0.18 +0.4 742,559 - MPMX19_03368 0.18 +1.0
Or see this region's nucleotide sequence