Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03363

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03362 and MPMX19_03363 are separated by 7 nucleotidesMPMX19_03363 and MPMX19_03364 are separated by 1 nucleotides MPMX19_03362: MPMX19_03362 - ABC transporter ATP-binding/permease protein YojI, at 735,354 to 737,027 _03362 MPMX19_03363: MPMX19_03363 - hypothetical protein, at 737,035 to 738,345 _03363 MPMX19_03364: MPMX19_03364 - Vitamin B12 import ATP-binding protein BtuD, at 738,347 to 740,098 _03364 Position (kb) 737 738 739Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 736.130 kb on - strand, within MPMX19_03362at 736.130 kb on - strand, within MPMX19_03362at 736.130 kb on - strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.159 kb on + strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.160 kb on - strand, within MPMX19_03362at 736.168 kb on + strand, within MPMX19_03362at 736.294 kb on + strand, within MPMX19_03362at 736.294 kb on + strand, within MPMX19_03362at 736.297 kb on + strand, within MPMX19_03362at 736.297 kb on + strand, within MPMX19_03362at 736.297 kb on + strand, within MPMX19_03362at 736.297 kb on + strand, within MPMX19_03362at 736.297 kb on + strand, within MPMX19_03362at 736.298 kb on - strand, within MPMX19_03362at 736.298 kb on - strand, within MPMX19_03362at 736.298 kb on - strand, within MPMX19_03362at 736.321 kb on + strand, within MPMX19_03362at 736.322 kb on - strand, within MPMX19_03362at 736.322 kb on - strand, within MPMX19_03362at 736.322 kb on - strand, within MPMX19_03362at 736.322 kb on - strand, within MPMX19_03362at 736.322 kb on - strand, within MPMX19_03362at 736.322 kb on - strand, within MPMX19_03362at 736.330 kb on + strand, within MPMX19_03362at 736.330 kb on + strand, within MPMX19_03362at 736.330 kb on + strand, within MPMX19_03362at 736.331 kb on - strand, within MPMX19_03362at 736.331 kb on - strand, within MPMX19_03362at 736.600 kb on + strand, within MPMX19_03362at 736.600 kb on + strand, within MPMX19_03362at 736.600 kb on + strand, within MPMX19_03362at 736.600 kb on + strand, within MPMX19_03362at 736.600 kb on + strand, within MPMX19_03362at 736.600 kb on + strand, within MPMX19_03362at 736.600 kb on + strand, within MPMX19_03362at 736.601 kb on - strand, within MPMX19_03362at 736.601 kb on - strand, within MPMX19_03362at 736.601 kb on - strand, within MPMX19_03362at 736.601 kb on - strand, within MPMX19_03362at 736.601 kb on - strand, within MPMX19_03362at 736.601 kb on - strand, within MPMX19_03362at 737.507 kb on + strand, within MPMX19_03363at 737.507 kb on + strand, within MPMX19_03363at 737.507 kb on + strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.508 kb on - strand, within MPMX19_03363at 737.615 kb on + strand, within MPMX19_03363at 737.616 kb on - strand, within MPMX19_03363at 737.616 kb on - strand, within MPMX19_03363at 737.717 kb on + strand, within MPMX19_03363at 737.717 kb on + strand, within MPMX19_03363at 737.777 kb on + strand, within MPMX19_03363at 737.777 kb on + strand, within MPMX19_03363at 737.777 kb on + strand, within MPMX19_03363at 737.777 kb on + strand, within MPMX19_03363at 737.777 kb on + strand, within MPMX19_03363at 737.778 kb on - strand, within MPMX19_03363at 737.778 kb on - strand, within MPMX19_03363at 737.778 kb on - strand, within MPMX19_03363at 737.778 kb on - strand, within MPMX19_03363at 737.778 kb on - strand, within MPMX19_03363at 737.804 kb on + strand, within MPMX19_03363at 737.804 kb on + strand, within MPMX19_03363at 737.804 kb on + strand, within MPMX19_03363at 737.804 kb on + strand, within MPMX19_03363at 737.804 kb on + strand, within MPMX19_03363at 737.805 kb on - strand, within MPMX19_03363at 737.805 kb on - strand, within MPMX19_03363at 737.805 kb on - strand, within MPMX19_03363at 737.805 kb on - strand, within MPMX19_03363at 737.805 kb on - strand, within MPMX19_03363at 737.841 kb on - strand, within MPMX19_03363at 737.841 kb on - strand, within MPMX19_03363at 737.841 kb on - strand, within MPMX19_03363at 737.841 kb on - strand, within MPMX19_03363at 737.964 kb on - strand, within MPMX19_03363at 738.026 kb on + strand, within MPMX19_03363at 738.059 kb on + strand, within MPMX19_03363at 738.059 kb on + strand, within MPMX19_03363at 738.060 kb on - strand, within MPMX19_03363at 738.060 kb on - strand, within MPMX19_03363at 738.200 kb on + strand, within MPMX19_03363at 738.200 kb on + strand, within MPMX19_03363at 738.201 kb on - strand, within MPMX19_03363at 738.201 kb on - strand, within MPMX19_03363at 738.260 kb on + strandat 738.345 kb on + strandat 738.346 kb on - strandat 738.346 kb on - strandat 738.753 kb on + strand, within MPMX19_03364at 738.754 kb on - strand, within MPMX19_03364at 739.128 kb on + strand, within MPMX19_03364at 739.129 kb on - strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.194 kb on + strand, within MPMX19_03364at 739.195 kb on - strand, within MPMX19_03364at 739.195 kb on - strand, within MPMX19_03364at 739.195 kb on - strand, within MPMX19_03364at 739.195 kb on - strand, within MPMX19_03364at 739.195 kb on - strand, within MPMX19_03364at 739.195 kb on - strand, within MPMX19_03364

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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736,130 - MPMX19_03362 0.46 -0.0
736,130 - MPMX19_03362 0.46 +1.5
736,130 - MPMX19_03362 0.46 -0.8
736,159 + MPMX19_03362 0.48 -1.2
736,159 + MPMX19_03362 0.48 -0.2
736,159 + MPMX19_03362 0.48 -0.8
736,159 + MPMX19_03362 0.48 +0.3
736,159 + MPMX19_03362 0.48 +0.2
736,159 + MPMX19_03362 0.48 -0.0
736,159 + MPMX19_03362 0.48 -2.1
736,159 + MPMX19_03362 0.48 -1.2
736,159 + MPMX19_03362 0.48 -0.0
736,159 + MPMX19_03362 0.48 -0.0
736,159 + MPMX19_03362 0.48 +0.1
736,159 + MPMX19_03362 0.48 -0.5
736,160 - MPMX19_03362 0.48 -2.9
736,160 - MPMX19_03362 0.48 +0.5
736,160 - MPMX19_03362 0.48 -0.6
736,160 - MPMX19_03362 0.48 -0.6
736,160 - MPMX19_03362 0.48 -0.1
736,160 - MPMX19_03362 0.48 +0.6
736,160 - MPMX19_03362 0.48 -2.6
736,160 - MPMX19_03362 0.48 -0.9
736,160 - MPMX19_03362 0.48 -1.0
736,160 - MPMX19_03362 0.48 -0.8
736,160 - MPMX19_03362 0.48 -0.7
736,160 - MPMX19_03362 0.48 +1.2
736,160 - MPMX19_03362 0.48 -0.2
736,160 - MPMX19_03362 0.48 -0.2
736,160 - MPMX19_03362 0.48 -1.3
736,160 - MPMX19_03362 0.48 -0.2
736,160 - MPMX19_03362 0.48 +0.1
736,160 - MPMX19_03362 0.48 -1.1
736,160 - MPMX19_03362 0.48 +0.1
736,160 - MPMX19_03362 0.48 +0.2
736,168 + MPMX19_03362 0.49 -0.3
736,294 + MPMX19_03362 0.56 +0.2
736,294 + MPMX19_03362 0.56 +1.0
736,297 + MPMX19_03362 0.56 -1.0
736,297 + MPMX19_03362 0.56 +0.6
736,297 + MPMX19_03362 0.56 +1.7
736,297 + MPMX19_03362 0.56 -2.4
736,297 + MPMX19_03362 0.56 -1.0
736,298 - MPMX19_03362 0.56 -0.7
736,298 - MPMX19_03362 0.56 -1.6
736,298 - MPMX19_03362 0.56 +0.2
736,321 + MPMX19_03362 0.58 -1.2
736,322 - MPMX19_03362 0.58 -1.4
736,322 - MPMX19_03362 0.58 -0.9
736,322 - MPMX19_03362 0.58 -1.0
736,322 - MPMX19_03362 0.58 -1.4
736,322 - MPMX19_03362 0.58 +0.5
736,322 - MPMX19_03362 0.58 -0.5
736,330 + MPMX19_03362 0.58 -0.5
736,330 + MPMX19_03362 0.58 -0.5
736,330 + MPMX19_03362 0.58 -1.6
736,331 - MPMX19_03362 0.58 -1.3
736,331 - MPMX19_03362 0.58 -0.4
736,600 + MPMX19_03362 0.74 -0.2
736,600 + MPMX19_03362 0.74 -0.3
736,600 + MPMX19_03362 0.74 -0.6
736,600 + MPMX19_03362 0.74 +0.7
736,600 + MPMX19_03362 0.74 -0.2
736,600 + MPMX19_03362 0.74 -0.9
736,600 + MPMX19_03362 0.74 +1.0
736,601 - MPMX19_03362 0.74 +1.0
736,601 - MPMX19_03362 0.74 -1.2
736,601 - MPMX19_03362 0.74 +1.3
736,601 - MPMX19_03362 0.74 -1.0
736,601 - MPMX19_03362 0.74 -0.2
736,601 - MPMX19_03362 0.74 -1.3
737,507 + MPMX19_03363 0.36 -1.1
737,507 + MPMX19_03363 0.36 +1.0
737,507 + MPMX19_03363 0.36 -0.1
737,508 - MPMX19_03363 0.36 -1.2
737,508 - MPMX19_03363 0.36 -0.8
737,508 - MPMX19_03363 0.36 +1.3
737,508 - MPMX19_03363 0.36 +0.3
737,508 - MPMX19_03363 0.36 +0.4
737,508 - MPMX19_03363 0.36 +0.1
737,615 + MPMX19_03363 0.44 -0.3
737,616 - MPMX19_03363 0.44 +0.2
737,616 - MPMX19_03363 0.44 -0.8
737,717 + MPMX19_03363 0.52 -0.3
737,717 + MPMX19_03363 0.52 -0.6
737,777 + MPMX19_03363 0.57 -1.3
737,777 + MPMX19_03363 0.57 +0.8
737,777 + MPMX19_03363 0.57 -0.1
737,777 + MPMX19_03363 0.57 +0.2
737,777 + MPMX19_03363 0.57 -0.0
737,778 - MPMX19_03363 0.57 -0.8
737,778 - MPMX19_03363 0.57 -0.3
737,778 - MPMX19_03363 0.57 -0.7
737,778 - MPMX19_03363 0.57 +0.2
737,778 - MPMX19_03363 0.57 +0.2
737,804 + MPMX19_03363 0.59 -0.2
737,804 + MPMX19_03363 0.59 +0.2
737,804 + MPMX19_03363 0.59 -1.0
737,804 + MPMX19_03363 0.59 -1.3
737,804 + MPMX19_03363 0.59 -1.2
737,805 - MPMX19_03363 0.59 -0.1
737,805 - MPMX19_03363 0.59 -0.8
737,805 - MPMX19_03363 0.59 -1.0
737,805 - MPMX19_03363 0.59 -0.0
737,805 - MPMX19_03363 0.59 -1.3
737,841 - MPMX19_03363 0.61 -1.5
737,841 - MPMX19_03363 0.61 +0.4
737,841 - MPMX19_03363 0.61 +0.8
737,841 - MPMX19_03363 0.61 -0.2
737,964 - MPMX19_03363 0.71 +0.5
738,026 + MPMX19_03363 0.76 +0.1
738,059 + MPMX19_03363 0.78 -1.0
738,059 + MPMX19_03363 0.78 -0.2
738,060 - MPMX19_03363 0.78 +2.0
738,060 - MPMX19_03363 0.78 -0.8
738,200 + MPMX19_03363 0.89 -0.5
738,200 + MPMX19_03363 0.89 +0.4
738,201 - MPMX19_03363 0.89 -0.5
738,201 - MPMX19_03363 0.89 -0.0
738,260 + +0.6
738,345 + +0.8
738,346 - -1.3
738,346 - -0.2
738,753 + MPMX19_03364 0.23 +0.2
738,754 - MPMX19_03364 0.23 +1.0
739,128 + MPMX19_03364 0.45 -0.6
739,129 - MPMX19_03364 0.45 -1.0
739,194 + MPMX19_03364 0.48 -0.6
739,194 + MPMX19_03364 0.48 -1.0
739,194 + MPMX19_03364 0.48 -0.8
739,194 + MPMX19_03364 0.48 -0.5
739,194 + MPMX19_03364 0.48 +0.6
739,194 + MPMX19_03364 0.48 +1.0
739,194 + MPMX19_03364 0.48 +0.4
739,194 + MPMX19_03364 0.48 -0.9
739,194 + MPMX19_03364 0.48 -0.1
739,194 + MPMX19_03364 0.48 -1.8
739,195 - MPMX19_03364 0.48 +0.3
739,195 - MPMX19_03364 0.48 -0.0
739,195 - MPMX19_03364 0.48 -2.2
739,195 - MPMX19_03364 0.48 +0.4
739,195 - MPMX19_03364 0.48 -0.8
739,195 - MPMX19_03364 0.48 -1.5

Or see this region's nucleotide sequence