Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03351 and MPMX19_03352 are separated by 15 nucleotides MPMX19_03352 and MPMX19_03353 are separated by 743 nucleotides
MPMX19_03351: MPMX19_03351 - hypothetical protein, at 710,108 to 711,742
_03351
MPMX19_03352: MPMX19_03352 - hypothetical protein, at 711,758 to 713,119
_03352
MPMX19_03353: MPMX19_03353 - hypothetical protein, at 713,863 to 714,804
_03353
Position (kb) 711
712
713
714 Strain fitness (log2 ratio) -2
-1
0
1
2 at 710.920 kb on - strand, within MPMX19_03351 at 711.036 kb on + strand, within MPMX19_03351 at 711.036 kb on + strand, within MPMX19_03351 at 711.037 kb on - strand, within MPMX19_03351 at 711.037 kb on - strand, within MPMX19_03351 at 711.213 kb on + strand, within MPMX19_03351 at 711.384 kb on + strand, within MPMX19_03351 at 711.384 kb on + strand, within MPMX19_03351 at 711.384 kb on + strand, within MPMX19_03351 at 711.384 kb on + strand, within MPMX19_03351 at 711.384 kb on + strand, within MPMX19_03351 at 711.384 kb on + strand, within MPMX19_03351 at 711.384 kb on + strand, within MPMX19_03351 at 711.384 kb on + strand, within MPMX19_03351 at 711.384 kb on + strand, within MPMX19_03351 at 711.384 kb on + strand, within MPMX19_03351 at 711.384 kb on + strand, within MPMX19_03351 at 711.384 kb on + strand, within MPMX19_03351 at 711.384 kb on + strand, within MPMX19_03351 at 711.384 kb on + strand, within MPMX19_03351 at 711.384 kb on + strand, within MPMX19_03351 at 711.384 kb on + strand, within MPMX19_03351 at 711.385 kb on - strand, within MPMX19_03351 at 711.385 kb on - strand, within MPMX19_03351 at 711.385 kb on - strand, within MPMX19_03351 at 711.385 kb on - strand, within MPMX19_03351 at 711.385 kb on - strand, within MPMX19_03351 at 711.385 kb on - strand, within MPMX19_03351 at 711.385 kb on - strand, within MPMX19_03351 at 711.385 kb on - strand, within MPMX19_03351 at 711.385 kb on - strand, within MPMX19_03351 at 711.385 kb on - strand, within MPMX19_03351 at 711.435 kb on + strand, within MPMX19_03351 at 711.436 kb on - strand, within MPMX19_03351 at 711.436 kb on - strand, within MPMX19_03351 at 711.436 kb on - strand, within MPMX19_03351 at 711.436 kb on - strand, within MPMX19_03351 at 711.626 kb on - strand at 711.747 kb on - strand at 711.747 kb on - strand at 711.759 kb on + strand at 712.190 kb on - strand, within MPMX19_03352 at 712.224 kb on - strand, within MPMX19_03352 at 712.293 kb on + strand, within MPMX19_03352 at 712.293 kb on + strand, within MPMX19_03352 at 712.293 kb on + strand, within MPMX19_03352 at 712.294 kb on - strand, within MPMX19_03352 at 712.294 kb on - strand, within MPMX19_03352 at 712.294 kb on - strand, within MPMX19_03352 at 712.294 kb on - strand, within MPMX19_03352 at 712.294 kb on - strand, within MPMX19_03352 at 712.521 kb on + strand, within MPMX19_03352 at 712.623 kb on + strand, within MPMX19_03352 at 712.623 kb on + strand, within MPMX19_03352 at 712.624 kb on - strand, within MPMX19_03352 at 712.624 kb on - strand, within MPMX19_03352 at 712.624 kb on - strand, within MPMX19_03352 at 712.624 kb on - strand, within MPMX19_03352 at 712.624 kb on - strand, within MPMX19_03352 at 712.700 kb on + strand, within MPMX19_03352 at 712.701 kb on - strand, within MPMX19_03352 at 712.825 kb on + strand, within MPMX19_03352 at 712.825 kb on + strand, within MPMX19_03352 at 712.826 kb on - strand, within MPMX19_03352 at 713.631 kb on - strand at 713.671 kb on - strand at 713.671 kb on - strand at 713.816 kb on + strand at 713.816 kb on + strand at 713.816 kb on + strand at 713.817 kb on - strand at 713.817 kb on - strand at 713.817 kb on - strand at 713.817 kb on - strand at 713.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 710,920 - MPMX19_03351 0.50 -1.3 711,036 + MPMX19_03351 0.57 -1.0 711,036 + MPMX19_03351 0.57 +1.0 711,037 - MPMX19_03351 0.57 -0.0 711,037 - MPMX19_03351 0.57 +0.4 711,213 + MPMX19_03351 0.68 -1.4 711,384 + MPMX19_03351 0.78 +0.3 711,384 + MPMX19_03351 0.78 -0.2 711,384 + MPMX19_03351 0.78 -0.5 711,384 + MPMX19_03351 0.78 +1.5 711,384 + MPMX19_03351 0.78 +0.7 711,384 + MPMX19_03351 0.78 -0.5 711,384 + MPMX19_03351 0.78 -0.1 711,384 + MPMX19_03351 0.78 -0.0 711,384 + MPMX19_03351 0.78 +0.3 711,384 + MPMX19_03351 0.78 -0.8 711,384 + MPMX19_03351 0.78 -1.0 711,384 + MPMX19_03351 0.78 -0.2 711,384 + MPMX19_03351 0.78 -0.8 711,384 + MPMX19_03351 0.78 -0.6 711,384 + MPMX19_03351 0.78 +2.0 711,384 + MPMX19_03351 0.78 +0.4 711,385 - MPMX19_03351 0.78 +0.7 711,385 - MPMX19_03351 0.78 -0.9 711,385 - MPMX19_03351 0.78 -1.3 711,385 - MPMX19_03351 0.78 -0.0 711,385 - MPMX19_03351 0.78 -0.2 711,385 - MPMX19_03351 0.78 -0.6 711,385 - MPMX19_03351 0.78 -0.1 711,385 - MPMX19_03351 0.78 -1.3 711,385 - MPMX19_03351 0.78 +0.5 711,385 - MPMX19_03351 0.78 -1.5 711,435 + MPMX19_03351 0.81 +1.4 711,436 - MPMX19_03351 0.81 -0.8 711,436 - MPMX19_03351 0.81 -0.3 711,436 - MPMX19_03351 0.81 -0.7 711,436 - MPMX19_03351 0.81 -1.0 711,626 - -0.2 711,747 - +1.8 711,747 - -0.4 711,759 + -0.3 712,190 - MPMX19_03352 0.32 -1.0 712,224 - MPMX19_03352 0.34 -1.1 712,293 + MPMX19_03352 0.39 -1.2 712,293 + MPMX19_03352 0.39 -0.6 712,293 + MPMX19_03352 0.39 -0.5 712,294 - MPMX19_03352 0.39 +1.0 712,294 - MPMX19_03352 0.39 -0.1 712,294 - MPMX19_03352 0.39 -1.9 712,294 - MPMX19_03352 0.39 -0.8 712,294 - MPMX19_03352 0.39 -1.0 712,521 + MPMX19_03352 0.56 -1.3 712,623 + MPMX19_03352 0.64 -2.6 712,623 + MPMX19_03352 0.64 +0.3 712,624 - MPMX19_03352 0.64 -1.6 712,624 - MPMX19_03352 0.64 -0.1 712,624 - MPMX19_03352 0.64 -0.7 712,624 - MPMX19_03352 0.64 -0.6 712,624 - MPMX19_03352 0.64 -1.3 712,700 + MPMX19_03352 0.69 -0.2 712,701 - MPMX19_03352 0.69 -1.5 712,825 + MPMX19_03352 0.78 -0.2 712,825 + MPMX19_03352 0.78 -1.7 712,826 - MPMX19_03352 0.78 -1.5 713,631 - -1.0 713,671 - -1.1 713,671 - -2.2 713,816 + +0.3 713,816 + -1.2 713,816 + +1.1 713,817 - -0.0 713,817 - -0.3 713,817 - -0.0 713,817 - -0.9 713,817 - +0.4
Or see this region's nucleotide sequence