Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03350

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03348 and MPMX19_03349 are separated by 5 nucleotidesMPMX19_03349 and MPMX19_03350 overlap by 4 nucleotidesMPMX19_03350 and MPMX19_03351 are separated by 11 nucleotides MPMX19_03348: MPMX19_03348 - hypothetical protein, at 707,198 to 708,340 _03348 MPMX19_03349: MPMX19_03349 - hypothetical protein, at 708,346 to 708,666 _03349 MPMX19_03350: MPMX19_03350 - GTP 3',8-cyclase, at 708,663 to 710,096 _03350 MPMX19_03351: MPMX19_03351 - hypothetical protein, at 710,108 to 711,742 _03351 Position (kb) 708 709 710 711Strain fitness (log2 ratio) -2 -1 0 1at 707.739 kb on + strand, within MPMX19_03348at 707.740 kb on - strand, within MPMX19_03348at 707.859 kb on + strand, within MPMX19_03348at 707.860 kb on - strand, within MPMX19_03348at 707.860 kb on - strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 708.087 kb on + strand, within MPMX19_03348at 708.087 kb on + strand, within MPMX19_03348at 708.087 kb on + strand, within MPMX19_03348at 708.087 kb on + strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348at 708.225 kb on + strand, within MPMX19_03348at 708.225 kb on + strand, within MPMX19_03348at 708.225 kb on + strand, within MPMX19_03348at 708.225 kb on + strand, within MPMX19_03348at 708.225 kb on + strand, within MPMX19_03348at 708.225 kb on + strand, within MPMX19_03348at 708.226 kb on - strandat 708.226 kb on - strandat 708.226 kb on - strandat 708.226 kb on - strandat 708.226 kb on - strandat 708.226 kb on - strandat 708.422 kb on + strand, within MPMX19_03349at 708.422 kb on + strand, within MPMX19_03349at 708.422 kb on + strand, within MPMX19_03349at 708.479 kb on + strand, within MPMX19_03349at 708.480 kb on - strand, within MPMX19_03349at 708.691 kb on + strandat 708.691 kb on + strandat 708.691 kb on + strandat 708.692 kb on - strandat 708.733 kb on + strandat 708.733 kb on + strandat 708.733 kb on + strandat 708.733 kb on + strandat 708.733 kb on + strandat 708.734 kb on - strandat 708.734 kb on - strandat 708.778 kb on + strandat 708.778 kb on + strandat 708.778 kb on + strandat 708.778 kb on + strandat 708.779 kb on - strandat 708.779 kb on - strandat 708.779 kb on - strandat 708.779 kb on - strandat 708.779 kb on - strandat 708.779 kb on - strandat 708.779 kb on - strandat 708.779 kb on - strandat 708.779 kb on - strandat 708.784 kb on + strandat 708.784 kb on + strandat 708.784 kb on + strandat 708.784 kb on + strandat 708.784 kb on + strandat 708.785 kb on - strandat 708.785 kb on - strandat 708.785 kb on - strandat 708.785 kb on - strandat 708.785 kb on - strandat 708.785 kb on - strandat 708.785 kb on - strandat 708.817 kb on + strand, within MPMX19_03350at 708.817 kb on + strand, within MPMX19_03350at 708.818 kb on - strand, within MPMX19_03350at 708.829 kb on + strand, within MPMX19_03350at 708.952 kb on + strand, within MPMX19_03350at 708.952 kb on + strand, within MPMX19_03350at 708.952 kb on + strand, within MPMX19_03350at 708.953 kb on - strand, within MPMX19_03350at 709.135 kb on + strand, within MPMX19_03350at 709.135 kb on + strand, within MPMX19_03350at 709.136 kb on - strand, within MPMX19_03350at 709.381 kb on + strand, within MPMX19_03350at 709.381 kb on + strand, within MPMX19_03350at 709.382 kb on - strand, within MPMX19_03350at 709.567 kb on + strand, within MPMX19_03350at 709.567 kb on + strand, within MPMX19_03350at 709.567 kb on + strand, within MPMX19_03350at 709.568 kb on - strand, within MPMX19_03350at 709.568 kb on - strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.738 kb on + strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.739 kb on - strand, within MPMX19_03350at 709.744 kb on + strand, within MPMX19_03350at 709.744 kb on + strand, within MPMX19_03350at 709.744 kb on + strand, within MPMX19_03350at 709.744 kb on + strand, within MPMX19_03350at 709.744 kb on + strand, within MPMX19_03350at 709.744 kb on + strand, within MPMX19_03350at 709.744 kb on + strand, within MPMX19_03350at 709.745 kb on - strand, within MPMX19_03350at 709.745 kb on - strand, within MPMX19_03350at 709.745 kb on - strand, within MPMX19_03350at 709.745 kb on - strand, within MPMX19_03350at 709.745 kb on - strand, within MPMX19_03350at 710.529 kb on + strand, within MPMX19_03351at 710.529 kb on + strand, within MPMX19_03351at 710.529 kb on + strand, within MPMX19_03351at 710.529 kb on + strand, within MPMX19_03351at 710.529 kb on + strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.530 kb on - strand, within MPMX19_03351at 710.920 kb on - strand, within MPMX19_03351at 711.036 kb on + strand, within MPMX19_03351at 711.036 kb on + strand, within MPMX19_03351at 711.037 kb on - strand, within MPMX19_03351at 711.037 kb on - strand, within MPMX19_03351

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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707,739 + MPMX19_03348 0.47 -0.9
707,740 - MPMX19_03348 0.47 -1.3
707,859 + MPMX19_03348 0.58 -1.1
707,860 - MPMX19_03348 0.58 -1.0
707,860 - MPMX19_03348 0.58 -0.1
707,928 + MPMX19_03348 0.64 -0.4
707,928 + MPMX19_03348 0.64 +0.0
707,928 + MPMX19_03348 0.64 -0.3
707,928 + MPMX19_03348 0.64 -0.2
707,928 + MPMX19_03348 0.64 -0.1
707,928 + MPMX19_03348 0.64 -2.7
707,928 + MPMX19_03348 0.64 -2.2
707,928 + MPMX19_03348 0.64 -0.7
707,928 + MPMX19_03348 0.64 +0.6
707,928 + MPMX19_03348 0.64 -1.6
707,928 + MPMX19_03348 0.64 -1.9
707,929 - MPMX19_03348 0.64 +0.9
707,929 - MPMX19_03348 0.64 -0.3
707,929 - MPMX19_03348 0.64 -0.7
707,929 - MPMX19_03348 0.64 +1.3
707,929 - MPMX19_03348 0.64 -0.7
707,929 - MPMX19_03348 0.64 -0.2
707,929 - MPMX19_03348 0.64 -1.5
707,929 - MPMX19_03348 0.64 -0.6
707,929 - MPMX19_03348 0.64 -1.4
707,929 - MPMX19_03348 0.64 -1.8
708,087 + MPMX19_03348 0.78 -0.5
708,087 + MPMX19_03348 0.78 -0.8
708,087 + MPMX19_03348 0.78 +0.2
708,087 + MPMX19_03348 0.78 +0.4
708,088 - MPMX19_03348 0.78 +0.2
708,088 - MPMX19_03348 0.78 +0.6
708,088 - MPMX19_03348 0.78 -0.6
708,088 - MPMX19_03348 0.78 +0.0
708,088 - MPMX19_03348 0.78 -0.2
708,088 - MPMX19_03348 0.78 +1.0
708,225 + MPMX19_03348 0.90 +0.7
708,225 + MPMX19_03348 0.90 -0.4
708,225 + MPMX19_03348 0.90 -1.3
708,225 + MPMX19_03348 0.90 -1.3
708,225 + MPMX19_03348 0.90 -0.6
708,225 + MPMX19_03348 0.90 +0.8
708,226 - -1.7
708,226 - -0.8
708,226 - -1.2
708,226 - -0.8
708,226 - -0.3
708,226 - +0.5
708,422 + MPMX19_03349 0.24 +0.6
708,422 + MPMX19_03349 0.24 +0.7
708,422 + MPMX19_03349 0.24 -1.9
708,479 + MPMX19_03349 0.41 +1.2
708,480 - MPMX19_03349 0.42 -0.7
708,691 + -0.5
708,691 + -2.0
708,691 + +0.2
708,692 - -0.8
708,733 + +0.6
708,733 + -1.7
708,733 + -0.7
708,733 + +0.3
708,733 + +0.6
708,734 - +0.1
708,734 - -1.3
708,778 + +0.5
708,778 + -0.6
708,778 + -0.3
708,778 + -1.0
708,779 - +0.3
708,779 - -0.5
708,779 - -1.0
708,779 - -1.0
708,779 - -0.7
708,779 - -0.3
708,779 - +0.4
708,779 - -0.2
708,779 - -2.2
708,784 + +1.1
708,784 + -2.2
708,784 + +0.4
708,784 + -1.5
708,784 + -1.7
708,785 - -0.2
708,785 - -0.5
708,785 - -0.8
708,785 - -1.0
708,785 - -1.2
708,785 - +0.7
708,785 - +0.1
708,817 + MPMX19_03350 0.11 +0.2
708,817 + MPMX19_03350 0.11 -0.8
708,818 - MPMX19_03350 0.11 +0.1
708,829 + MPMX19_03350 0.12 -2.5
708,952 + MPMX19_03350 0.20 -2.5
708,952 + MPMX19_03350 0.20 +0.8
708,952 + MPMX19_03350 0.20 +0.7
708,953 - MPMX19_03350 0.20 -1.8
709,135 + MPMX19_03350 0.33 +1.0
709,135 + MPMX19_03350 0.33 +0.2
709,136 - MPMX19_03350 0.33 +0.4
709,381 + MPMX19_03350 0.50 +0.2
709,381 + MPMX19_03350 0.50 +0.4
709,382 - MPMX19_03350 0.50 -0.3
709,567 + MPMX19_03350 0.63 +1.0
709,567 + MPMX19_03350 0.63 +0.7
709,567 + MPMX19_03350 0.63 +0.2
709,568 - MPMX19_03350 0.63 +1.3
709,568 - MPMX19_03350 0.63 -0.4
709,738 + MPMX19_03350 0.75 +1.2
709,738 + MPMX19_03350 0.75 +1.0
709,738 + MPMX19_03350 0.75 -0.0
709,738 + MPMX19_03350 0.75 -0.3
709,738 + MPMX19_03350 0.75 +1.0
709,738 + MPMX19_03350 0.75 +0.5
709,738 + MPMX19_03350 0.75 +0.3
709,738 + MPMX19_03350 0.75 +1.6
709,738 + MPMX19_03350 0.75 +0.2
709,738 + MPMX19_03350 0.75 +0.4
709,739 - MPMX19_03350 0.75 -0.5
709,739 - MPMX19_03350 0.75 -0.0
709,739 - MPMX19_03350 0.75 +1.6
709,739 - MPMX19_03350 0.75 -0.8
709,739 - MPMX19_03350 0.75 -0.6
709,739 - MPMX19_03350 0.75 +0.6
709,739 - MPMX19_03350 0.75 -1.2
709,739 - MPMX19_03350 0.75 -1.3
709,739 - MPMX19_03350 0.75 +0.4
709,739 - MPMX19_03350 0.75 -0.2
709,739 - MPMX19_03350 0.75 -0.2
709,739 - MPMX19_03350 0.75 -0.7
709,739 - MPMX19_03350 0.75 -1.2
709,744 + MPMX19_03350 0.75 +0.3
709,744 + MPMX19_03350 0.75 +0.3
709,744 + MPMX19_03350 0.75 +0.4
709,744 + MPMX19_03350 0.75 +1.7
709,744 + MPMX19_03350 0.75 +0.7
709,744 + MPMX19_03350 0.75 -0.8
709,744 + MPMX19_03350 0.75 -0.6
709,745 - MPMX19_03350 0.75 -1.0
709,745 - MPMX19_03350 0.75 +0.9
709,745 - MPMX19_03350 0.75 -0.7
709,745 - MPMX19_03350 0.75 +1.2
709,745 - MPMX19_03350 0.75 -0.8
710,529 + MPMX19_03351 0.26 +1.6
710,529 + MPMX19_03351 0.26 -0.9
710,529 + MPMX19_03351 0.26 +0.5
710,529 + MPMX19_03351 0.26 -0.9
710,529 + MPMX19_03351 0.26 -0.3
710,530 - MPMX19_03351 0.26 -0.1
710,530 - MPMX19_03351 0.26 +0.3
710,530 - MPMX19_03351 0.26 -0.6
710,530 - MPMX19_03351 0.26 -0.0
710,530 - MPMX19_03351 0.26 -0.0
710,530 - MPMX19_03351 0.26 -0.0
710,530 - MPMX19_03351 0.26 +0.7
710,530 - MPMX19_03351 0.26 -2.3
710,530 - MPMX19_03351 0.26 -0.0
710,530 - MPMX19_03351 0.26 -0.0
710,530 - MPMX19_03351 0.26 +0.5
710,920 - MPMX19_03351 0.50 -1.3
711,036 + MPMX19_03351 0.57 -1.0
711,036 + MPMX19_03351 0.57 +1.0
711,037 - MPMX19_03351 0.57 -0.0
711,037 - MPMX19_03351 0.57 +0.4

Or see this region's nucleotide sequence