Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03347

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03345 and MPMX19_03346 are separated by 144 nucleotidesMPMX19_03346 and MPMX19_03347 overlap by 16 nucleotidesMPMX19_03347 and MPMX19_03348 are separated by 60 nucleotides MPMX19_03345: MPMX19_03345 - Phenylacetaldehyde dehydrogenase, at 703,239 to 704,654 _03345 MPMX19_03346: MPMX19_03346 - hypothetical protein, at 704,799 to 705,449 _03346 MPMX19_03347: MPMX19_03347 - Putative multidrug export ATP-binding/permease protein, at 705,434 to 707,137 _03347 MPMX19_03348: MPMX19_03348 - hypothetical protein, at 707,198 to 708,340 _03348 Position (kb) 705 706 707 708Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 704.644 kb on + strandat 704.644 kb on + strandat 704.645 kb on - strandat 704.645 kb on - strandat 704.645 kb on - strandat 704.711 kb on + strandat 704.711 kb on + strandat 704.711 kb on + strandat 704.711 kb on + strandat 704.711 kb on + strandat 704.711 kb on + strandat 704.712 kb on - strandat 704.712 kb on - strandat 704.712 kb on - strandat 704.712 kb on - strandat 704.712 kb on - strandat 704.712 kb on - strandat 705.502 kb on - strandat 705.981 kb on + strand, within MPMX19_03347at 705.981 kb on + strand, within MPMX19_03347at 705.981 kb on + strand, within MPMX19_03347at 705.981 kb on + strand, within MPMX19_03347at 705.982 kb on - strand, within MPMX19_03347at 705.982 kb on - strand, within MPMX19_03347at 705.982 kb on - strand, within MPMX19_03347at 706.293 kb on + strand, within MPMX19_03347at 706.293 kb on + strand, within MPMX19_03347at 706.293 kb on + strand, within MPMX19_03347at 706.294 kb on - strand, within MPMX19_03347at 706.815 kb on + strand, within MPMX19_03347at 706.816 kb on - strand, within MPMX19_03347at 706.816 kb on - strand, within MPMX19_03347at 706.816 kb on - strand, within MPMX19_03347at 706.816 kb on - strand, within MPMX19_03347at 706.816 kb on - strand, within MPMX19_03347at 706.848 kb on + strand, within MPMX19_03347at 706.848 kb on + strand, within MPMX19_03347at 706.848 kb on + strand, within MPMX19_03347at 706.849 kb on - strand, within MPMX19_03347at 706.849 kb on - strand, within MPMX19_03347at 706.896 kb on + strand, within MPMX19_03347at 706.896 kb on + strand, within MPMX19_03347at 706.896 kb on + strand, within MPMX19_03347at 706.896 kb on + strand, within MPMX19_03347at 706.896 kb on + strand, within MPMX19_03347at 706.897 kb on - strand, within MPMX19_03347at 706.897 kb on - strand, within MPMX19_03347at 706.897 kb on - strand, within MPMX19_03347at 707.161 kb on + strandat 707.161 kb on + strandat 707.162 kb on - strandat 707.195 kb on - strandat 707.195 kb on - strandat 707.199 kb on + strandat 707.322 kb on + strand, within MPMX19_03348at 707.322 kb on + strand, within MPMX19_03348at 707.322 kb on + strand, within MPMX19_03348at 707.322 kb on + strand, within MPMX19_03348at 707.322 kb on + strand, within MPMX19_03348at 707.323 kb on - strand, within MPMX19_03348at 707.323 kb on - strand, within MPMX19_03348at 707.323 kb on - strand, within MPMX19_03348at 707.323 kb on - strand, within MPMX19_03348at 707.323 kb on - strand, within MPMX19_03348at 707.323 kb on - strand, within MPMX19_03348at 707.358 kb on + strand, within MPMX19_03348at 707.358 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.361 kb on + strand, within MPMX19_03348at 707.362 kb on - strand, within MPMX19_03348at 707.362 kb on - strand, within MPMX19_03348at 707.362 kb on - strand, within MPMX19_03348at 707.362 kb on - strand, within MPMX19_03348at 707.362 kb on - strand, within MPMX19_03348at 707.362 kb on - strand, within MPMX19_03348at 707.362 kb on - strand, within MPMX19_03348at 707.362 kb on - strand, within MPMX19_03348at 707.430 kb on + strand, within MPMX19_03348at 707.431 kb on - strand, within MPMX19_03348at 707.431 kb on - strand, within MPMX19_03348at 707.431 kb on - strand, within MPMX19_03348at 707.440 kb on - strand, within MPMX19_03348at 707.604 kb on + strand, within MPMX19_03348at 707.604 kb on + strand, within MPMX19_03348at 707.605 kb on - strand, within MPMX19_03348at 707.605 kb on - strand, within MPMX19_03348at 707.605 kb on - strand, within MPMX19_03348at 707.739 kb on + strand, within MPMX19_03348at 707.740 kb on - strand, within MPMX19_03348at 707.859 kb on + strand, within MPMX19_03348at 707.860 kb on - strand, within MPMX19_03348at 707.860 kb on - strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.928 kb on + strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 707.929 kb on - strand, within MPMX19_03348at 708.087 kb on + strand, within MPMX19_03348at 708.087 kb on + strand, within MPMX19_03348at 708.087 kb on + strand, within MPMX19_03348at 708.087 kb on + strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348at 708.088 kb on - strand, within MPMX19_03348

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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704,644 + +0.2
704,644 + +0.2
704,645 - +0.4
704,645 - -0.1
704,645 - -0.1
704,711 + -0.5
704,711 + -0.5
704,711 + +0.0
704,711 + -2.1
704,711 + +0.6
704,711 + +0.0
704,712 - +1.4
704,712 - +0.9
704,712 - -0.8
704,712 - +1.5
704,712 - +0.0
704,712 - -1.3
705,502 - +0.0
705,981 + MPMX19_03347 0.32 -1.1
705,981 + MPMX19_03347 0.32 -0.5
705,981 + MPMX19_03347 0.32 +0.4
705,981 + MPMX19_03347 0.32 -1.1
705,982 - MPMX19_03347 0.32 +0.3
705,982 - MPMX19_03347 0.32 -1.1
705,982 - MPMX19_03347 0.32 -1.5
706,293 + MPMX19_03347 0.50 -2.3
706,293 + MPMX19_03347 0.50 -0.3
706,293 + MPMX19_03347 0.50 +0.4
706,294 - MPMX19_03347 0.50 -1.5
706,815 + MPMX19_03347 0.81 -1.6
706,816 - MPMX19_03347 0.81 -0.6
706,816 - MPMX19_03347 0.81 -0.6
706,816 - MPMX19_03347 0.81 +0.4
706,816 - MPMX19_03347 0.81 -2.8
706,816 - MPMX19_03347 0.81 -0.9
706,848 + MPMX19_03347 0.83 -0.5
706,848 + MPMX19_03347 0.83 +0.2
706,848 + MPMX19_03347 0.83 -0.7
706,849 - MPMX19_03347 0.83 -0.6
706,849 - MPMX19_03347 0.83 -1.3
706,896 + MPMX19_03347 0.86 -0.5
706,896 + MPMX19_03347 0.86 +0.0
706,896 + MPMX19_03347 0.86 +0.5
706,896 + MPMX19_03347 0.86 -1.9
706,896 + MPMX19_03347 0.86 -1.3
706,897 - MPMX19_03347 0.86 -0.3
706,897 - MPMX19_03347 0.86 -0.3
706,897 - MPMX19_03347 0.86 -2.4
707,161 + -0.1
707,161 + -0.6
707,162 - +0.8
707,195 - -0.3
707,195 - -0.5
707,199 + +0.2
707,322 + MPMX19_03348 0.11 -1.9
707,322 + MPMX19_03348 0.11 +0.1
707,322 + MPMX19_03348 0.11 +2.0
707,322 + MPMX19_03348 0.11 +0.1
707,322 + MPMX19_03348 0.11 +1.0
707,323 - MPMX19_03348 0.11 +0.5
707,323 - MPMX19_03348 0.11 +0.3
707,323 - MPMX19_03348 0.11 +0.2
707,323 - MPMX19_03348 0.11 -1.8
707,323 - MPMX19_03348 0.11 -0.5
707,323 - MPMX19_03348 0.11 +0.3
707,358 + MPMX19_03348 0.14 -1.5
707,358 + MPMX19_03348 0.14 -0.6
707,361 + MPMX19_03348 0.14 -1.7
707,361 + MPMX19_03348 0.14 -1.0
707,361 + MPMX19_03348 0.14 -0.4
707,361 + MPMX19_03348 0.14 -1.8
707,361 + MPMX19_03348 0.14 -1.5
707,361 + MPMX19_03348 0.14 -0.1
707,361 + MPMX19_03348 0.14 -0.9
707,361 + MPMX19_03348 0.14 -0.2
707,361 + MPMX19_03348 0.14 -2.4
707,361 + MPMX19_03348 0.14 -0.4
707,361 + MPMX19_03348 0.14 -1.6
707,361 + MPMX19_03348 0.14 -1.3
707,361 + MPMX19_03348 0.14 +0.0
707,362 - MPMX19_03348 0.14 +0.2
707,362 - MPMX19_03348 0.14 -1.0
707,362 - MPMX19_03348 0.14 +0.1
707,362 - MPMX19_03348 0.14 +0.7
707,362 - MPMX19_03348 0.14 -0.6
707,362 - MPMX19_03348 0.14 -0.8
707,362 - MPMX19_03348 0.14 -0.8
707,362 - MPMX19_03348 0.14 -1.7
707,430 + MPMX19_03348 0.20 -1.0
707,431 - MPMX19_03348 0.20 +0.2
707,431 - MPMX19_03348 0.20 -0.6
707,431 - MPMX19_03348 0.20 +0.4
707,440 - MPMX19_03348 0.21 -1.1
707,604 + MPMX19_03348 0.36 +0.4
707,604 + MPMX19_03348 0.36 +0.7
707,605 - MPMX19_03348 0.36 +0.8
707,605 - MPMX19_03348 0.36 -0.8
707,605 - MPMX19_03348 0.36 +0.1
707,739 + MPMX19_03348 0.47 -0.9
707,740 - MPMX19_03348 0.47 -1.3
707,859 + MPMX19_03348 0.58 -1.1
707,860 - MPMX19_03348 0.58 -1.0
707,860 - MPMX19_03348 0.58 -0.1
707,928 + MPMX19_03348 0.64 -0.4
707,928 + MPMX19_03348 0.64 +0.0
707,928 + MPMX19_03348 0.64 -0.3
707,928 + MPMX19_03348 0.64 -0.2
707,928 + MPMX19_03348 0.64 -0.1
707,928 + MPMX19_03348 0.64 -2.7
707,928 + MPMX19_03348 0.64 -2.2
707,928 + MPMX19_03348 0.64 -0.7
707,928 + MPMX19_03348 0.64 +0.6
707,928 + MPMX19_03348 0.64 -1.6
707,928 + MPMX19_03348 0.64 -1.9
707,929 - MPMX19_03348 0.64 +0.9
707,929 - MPMX19_03348 0.64 -0.3
707,929 - MPMX19_03348 0.64 -0.7
707,929 - MPMX19_03348 0.64 +1.3
707,929 - MPMX19_03348 0.64 -0.7
707,929 - MPMX19_03348 0.64 -0.2
707,929 - MPMX19_03348 0.64 -1.5
707,929 - MPMX19_03348 0.64 -0.6
707,929 - MPMX19_03348 0.64 -1.4
707,929 - MPMX19_03348 0.64 -1.8
708,087 + MPMX19_03348 0.78 -0.5
708,087 + MPMX19_03348 0.78 -0.8
708,087 + MPMX19_03348 0.78 +0.2
708,087 + MPMX19_03348 0.78 +0.4
708,088 - MPMX19_03348 0.78 +0.2
708,088 - MPMX19_03348 0.78 +0.6
708,088 - MPMX19_03348 0.78 -0.6
708,088 - MPMX19_03348 0.78 +0.0
708,088 - MPMX19_03348 0.78 -0.2
708,088 - MPMX19_03348 0.78 +1.0

Or see this region's nucleotide sequence