Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03337

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03336 and MPMX19_03337 are separated by 75 nucleotidesMPMX19_03337 and MPMX19_03338 are separated by 115 nucleotides MPMX19_03336: MPMX19_03336 - hypothetical protein, at 690,047 to 691,135 _03336 MPMX19_03337: MPMX19_03337 - Periplasmic oligopeptide-binding protein, at 691,211 to 692,830 _03337 MPMX19_03338: MPMX19_03338 - hypothetical protein, at 692,946 to 693,896 _03338 Position (kb) 691 692 693Strain fitness (log2 ratio) -3 -2 -1 0 1at 690.387 kb on + strand, within MPMX19_03336at 690.504 kb on + strand, within MPMX19_03336at 690.504 kb on + strand, within MPMX19_03336at 690.543 kb on + strand, within MPMX19_03336at 690.630 kb on + strand, within MPMX19_03336at 690.631 kb on - strand, within MPMX19_03336at 690.645 kb on + strand, within MPMX19_03336at 690.646 kb on - strand, within MPMX19_03336at 690.672 kb on + strand, within MPMX19_03336at 690.672 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.753 kb on + strand, within MPMX19_03336at 690.754 kb on - strand, within MPMX19_03336at 690.754 kb on - strand, within MPMX19_03336at 690.870 kb on + strand, within MPMX19_03336at 690.870 kb on + strand, within MPMX19_03336at 690.871 kb on - strand, within MPMX19_03336at 691.041 kb on + strandat 691.041 kb on + strandat 691.042 kb on - strandat 691.042 kb on - strandat 691.272 kb on + strandat 691.272 kb on + strandat 691.272 kb on + strandat 691.273 kb on - strandat 691.273 kb on - strandat 691.273 kb on - strandat 691.273 kb on - strandat 691.273 kb on - strandat 691.273 kb on - strandat 691.273 kb on - strandat 691.323 kb on + strandat 691.323 kb on + strandat 691.324 kb on - strandat 691.324 kb on - strandat 691.324 kb on - strandat 691.324 kb on - strandat 691.324 kb on - strandat 691.417 kb on + strand, within MPMX19_03337at 691.417 kb on + strand, within MPMX19_03337at 691.417 kb on + strand, within MPMX19_03337at 691.418 kb on - strand, within MPMX19_03337at 691.418 kb on - strand, within MPMX19_03337at 691.434 kb on + strand, within MPMX19_03337at 691.434 kb on + strand, within MPMX19_03337at 691.434 kb on + strand, within MPMX19_03337at 691.434 kb on + strand, within MPMX19_03337at 691.434 kb on + strand, within MPMX19_03337at 691.434 kb on + strand, within MPMX19_03337at 691.434 kb on + strand, within MPMX19_03337at 691.434 kb on + strand, within MPMX19_03337at 691.435 kb on - strand, within MPMX19_03337at 691.435 kb on - strand, within MPMX19_03337at 691.435 kb on - strand, within MPMX19_03337at 691.435 kb on - strand, within MPMX19_03337at 691.518 kb on + strand, within MPMX19_03337at 691.518 kb on + strand, within MPMX19_03337at 691.578 kb on + strand, within MPMX19_03337at 691.578 kb on + strand, within MPMX19_03337at 691.578 kb on + strand, within MPMX19_03337at 691.579 kb on - strand, within MPMX19_03337at 691.579 kb on - strand, within MPMX19_03337at 691.579 kb on - strand, within MPMX19_03337at 691.690 kb on - strand, within MPMX19_03337at 691.690 kb on - strand, within MPMX19_03337at 691.809 kb on + strand, within MPMX19_03337at 691.809 kb on + strand, within MPMX19_03337at 691.809 kb on + strand, within MPMX19_03337at 691.839 kb on + strand, within MPMX19_03337at 691.839 kb on + strand, within MPMX19_03337at 691.962 kb on + strand, within MPMX19_03337at 691.963 kb on - strand, within MPMX19_03337at 691.963 kb on - strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.965 kb on + strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.966 kb on - strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.968 kb on + strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 691.969 kb on - strand, within MPMX19_03337at 692.049 kb on + strand, within MPMX19_03337at 692.049 kb on + strand, within MPMX19_03337at 692.049 kb on + strand, within MPMX19_03337at 692.049 kb on + strand, within MPMX19_03337at 692.050 kb on - strand, within MPMX19_03337at 692.050 kb on - strand, within MPMX19_03337at 692.050 kb on - strand, within MPMX19_03337at 692.050 kb on - strand, within MPMX19_03337at 692.050 kb on - strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.211 kb on + strand, within MPMX19_03337at 692.212 kb on - strand, within MPMX19_03337at 692.212 kb on - strand, within MPMX19_03337at 692.212 kb on - strand, within MPMX19_03337at 692.212 kb on - strand, within MPMX19_03337at 692.212 kb on - strand, within MPMX19_03337at 692.212 kb on - strand, within MPMX19_03337at 692.212 kb on - strand, within MPMX19_03337at 692.325 kb on + strand, within MPMX19_03337at 692.326 kb on - strand, within MPMX19_03337at 692.496 kb on + strand, within MPMX19_03337at 692.497 kb on - strand, within MPMX19_03337at 692.565 kb on + strand, within MPMX19_03337at 692.565 kb on + strand, within MPMX19_03337at 692.565 kb on + strand, within MPMX19_03337at 692.565 kb on + strand, within MPMX19_03337at 692.566 kb on - strand, within MPMX19_03337at 692.566 kb on - strand, within MPMX19_03337at 692.566 kb on - strand, within MPMX19_03337at 692.634 kb on + strand, within MPMX19_03337at 692.634 kb on + strand, within MPMX19_03337at 692.634 kb on + strand, within MPMX19_03337at 692.634 kb on + strand, within MPMX19_03337at 692.634 kb on + strand, within MPMX19_03337at 692.635 kb on - strand, within MPMX19_03337at 692.635 kb on - strand, within MPMX19_03337at 692.635 kb on - strand, within MPMX19_03337at 692.635 kb on - strand, within MPMX19_03337at 692.635 kb on - strand, within MPMX19_03337at 692.635 kb on - strand, within MPMX19_03337at 692.635 kb on - strand, within MPMX19_03337at 692.635 kb on - strand, within MPMX19_03337at 692.807 kb on + strandat 692.819 kb on + strandat 692.819 kb on + strandat 692.819 kb on + strandat 692.819 kb on + strandat 692.819 kb on + strandat 692.819 kb on + strandat 692.819 kb on + strandat 692.819 kb on + strandat 692.819 kb on + strandat 692.820 kb on - strandat 692.820 kb on - strandat 692.820 kb on - strandat 692.820 kb on - strandat 692.820 kb on - strandat 693.216 kb on - strand, within MPMX19_03338at 693.367 kb on + strand, within MPMX19_03338at 693.367 kb on + strand, within MPMX19_03338at 693.368 kb on - strand, within MPMX19_03338at 693.368 kb on - strand, within MPMX19_03338at 693.404 kb on - strand, within MPMX19_03338at 693.715 kb on + strand, within MPMX19_03338at 693.716 kb on - strand, within MPMX19_03338at 693.716 kb on - strand, within MPMX19_03338at 693.716 kb on - strand, within MPMX19_03338

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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690,387 + MPMX19_03336 0.31 +0.0
690,504 + MPMX19_03336 0.42 -1.7
690,504 + MPMX19_03336 0.42 -0.2
690,543 + MPMX19_03336 0.46 +0.7
690,630 + MPMX19_03336 0.54 -0.3
690,631 - MPMX19_03336 0.54 -0.2
690,645 + MPMX19_03336 0.55 +0.1
690,646 - MPMX19_03336 0.55 +0.6
690,672 + MPMX19_03336 0.57 -0.9
690,672 + MPMX19_03336 0.57 +0.4
690,753 + MPMX19_03336 0.65 -0.3
690,753 + MPMX19_03336 0.65 +0.1
690,753 + MPMX19_03336 0.65 -1.2
690,753 + MPMX19_03336 0.65 -1.5
690,753 + MPMX19_03336 0.65 +1.0
690,753 + MPMX19_03336 0.65 -3.5
690,753 + MPMX19_03336 0.65 -0.3
690,753 + MPMX19_03336 0.65 -2.3
690,753 + MPMX19_03336 0.65 -0.7
690,754 - MPMX19_03336 0.65 -0.8
690,754 - MPMX19_03336 0.65 -0.6
690,870 + MPMX19_03336 0.76 -0.0
690,870 + MPMX19_03336 0.76 -0.3
690,871 - MPMX19_03336 0.76 -1.3
691,041 + -0.6
691,041 + -0.2
691,042 - -0.2
691,042 - -0.6
691,272 + -0.5
691,272 + +0.4
691,272 + -1.3
691,273 - +0.3
691,273 - -0.7
691,273 - -1.7
691,273 - +0.2
691,273 - -0.2
691,273 - -0.6
691,273 - -1.6
691,323 + -0.3
691,323 + -0.6
691,324 - -0.0
691,324 - -1.5
691,324 - +1.0
691,324 - -0.2
691,324 - -0.4
691,417 + MPMX19_03337 0.13 -1.1
691,417 + MPMX19_03337 0.13 +0.0
691,417 + MPMX19_03337 0.13 -0.6
691,418 - MPMX19_03337 0.13 -0.5
691,418 - MPMX19_03337 0.13 -0.5
691,434 + MPMX19_03337 0.14 -2.6
691,434 + MPMX19_03337 0.14 +0.1
691,434 + MPMX19_03337 0.14 -0.9
691,434 + MPMX19_03337 0.14 +0.1
691,434 + MPMX19_03337 0.14 -0.1
691,434 + MPMX19_03337 0.14 -0.7
691,434 + MPMX19_03337 0.14 +0.2
691,434 + MPMX19_03337 0.14 -0.3
691,435 - MPMX19_03337 0.14 -1.7
691,435 - MPMX19_03337 0.14 +0.3
691,435 - MPMX19_03337 0.14 -0.4
691,435 - MPMX19_03337 0.14 -0.3
691,518 + MPMX19_03337 0.19 -0.6
691,518 + MPMX19_03337 0.19 -0.2
691,578 + MPMX19_03337 0.23 -0.6
691,578 + MPMX19_03337 0.23 +0.0
691,578 + MPMX19_03337 0.23 -1.0
691,579 - MPMX19_03337 0.23 +0.7
691,579 - MPMX19_03337 0.23 -1.2
691,579 - MPMX19_03337 0.23 -1.9
691,690 - MPMX19_03337 0.30 -0.6
691,690 - MPMX19_03337 0.30 -2.2
691,809 + MPMX19_03337 0.37 -0.1
691,809 + MPMX19_03337 0.37 -0.8
691,809 + MPMX19_03337 0.37 -0.3
691,839 + MPMX19_03337 0.39 -1.2
691,839 + MPMX19_03337 0.39 +1.0
691,962 + MPMX19_03337 0.46 +1.0
691,963 - MPMX19_03337 0.46 +1.7
691,963 - MPMX19_03337 0.46 -1.6
691,965 + MPMX19_03337 0.47 -2.4
691,965 + MPMX19_03337 0.47 -0.3
691,965 + MPMX19_03337 0.47 +0.5
691,965 + MPMX19_03337 0.47 -0.2
691,965 + MPMX19_03337 0.47 -0.2
691,965 + MPMX19_03337 0.47 -1.2
691,965 + MPMX19_03337 0.47 -1.2
691,966 - MPMX19_03337 0.47 +0.4
691,966 - MPMX19_03337 0.47 -0.7
691,966 - MPMX19_03337 0.47 +0.0
691,966 - MPMX19_03337 0.47 -1.2
691,966 - MPMX19_03337 0.47 -2.2
691,966 - MPMX19_03337 0.47 -0.8
691,966 - MPMX19_03337 0.47 -0.2
691,966 - MPMX19_03337 0.47 -1.0
691,968 + MPMX19_03337 0.47 -1.6
691,968 + MPMX19_03337 0.47 -0.4
691,968 + MPMX19_03337 0.47 +1.0
691,968 + MPMX19_03337 0.47 -1.5
691,968 + MPMX19_03337 0.47 -0.1
691,968 + MPMX19_03337 0.47 -2.1
691,968 + MPMX19_03337 0.47 -0.8
691,969 - MPMX19_03337 0.47 -1.5
691,969 - MPMX19_03337 0.47 -0.5
691,969 - MPMX19_03337 0.47 +0.4
691,969 - MPMX19_03337 0.47 -1.8
691,969 - MPMX19_03337 0.47 +0.3
691,969 - MPMX19_03337 0.47 -0.7
691,969 - MPMX19_03337 0.47 +1.2
692,049 + MPMX19_03337 0.52 -0.5
692,049 + MPMX19_03337 0.52 -1.0
692,049 + MPMX19_03337 0.52 -1.6
692,049 + MPMX19_03337 0.52 -1.9
692,050 - MPMX19_03337 0.52 -0.9
692,050 - MPMX19_03337 0.52 -0.8
692,050 - MPMX19_03337 0.52 -0.4
692,050 - MPMX19_03337 0.52 +0.1
692,050 - MPMX19_03337 0.52 -1.0
692,211 + MPMX19_03337 0.62 -0.2
692,211 + MPMX19_03337 0.62 -0.5
692,211 + MPMX19_03337 0.62 -1.6
692,211 + MPMX19_03337 0.62 -0.5
692,211 + MPMX19_03337 0.62 -0.2
692,211 + MPMX19_03337 0.62 +0.3
692,211 + MPMX19_03337 0.62 -1.0
692,211 + MPMX19_03337 0.62 -0.9
692,211 + MPMX19_03337 0.62 -0.0
692,211 + MPMX19_03337 0.62 +0.2
692,211 + MPMX19_03337 0.62 -0.1
692,212 - MPMX19_03337 0.62 -1.4
692,212 - MPMX19_03337 0.62 -0.7
692,212 - MPMX19_03337 0.62 -2.0
692,212 - MPMX19_03337 0.62 -1.5
692,212 - MPMX19_03337 0.62 -0.8
692,212 - MPMX19_03337 0.62 -0.9
692,212 - MPMX19_03337 0.62 -0.7
692,325 + MPMX19_03337 0.69 -0.7
692,326 - MPMX19_03337 0.69 -0.4
692,496 + MPMX19_03337 0.79 +0.6
692,497 - MPMX19_03337 0.79 +0.1
692,565 + MPMX19_03337 0.84 -0.7
692,565 + MPMX19_03337 0.84 -0.6
692,565 + MPMX19_03337 0.84 +0.1
692,565 + MPMX19_03337 0.84 -1.5
692,566 - MPMX19_03337 0.84 -0.3
692,566 - MPMX19_03337 0.84 +1.0
692,566 - MPMX19_03337 0.84 -0.3
692,634 + MPMX19_03337 0.88 -1.5
692,634 + MPMX19_03337 0.88 -0.9
692,634 + MPMX19_03337 0.88 -0.2
692,634 + MPMX19_03337 0.88 -0.6
692,634 + MPMX19_03337 0.88 +0.3
692,635 - MPMX19_03337 0.88 -0.7
692,635 - MPMX19_03337 0.88 +0.3
692,635 - MPMX19_03337 0.88 +0.0
692,635 - MPMX19_03337 0.88 +0.3
692,635 - MPMX19_03337 0.88 +0.7
692,635 - MPMX19_03337 0.88 -0.3
692,635 - MPMX19_03337 0.88 +0.4
692,635 - MPMX19_03337 0.88 +1.0
692,807 + +0.3
692,819 + -0.6
692,819 + -1.3
692,819 + -1.7
692,819 + -1.2
692,819 + -1.5
692,819 + -1.4
692,819 + -1.2
692,819 + -0.1
692,819 + -0.6
692,820 - -0.9
692,820 - -0.3
692,820 - +0.3
692,820 - -1.3
692,820 - -2.0
693,216 - MPMX19_03338 0.28 -0.8
693,367 + MPMX19_03338 0.44 -0.2
693,367 + MPMX19_03338 0.44 +0.1
693,368 - MPMX19_03338 0.44 -1.4
693,368 - MPMX19_03338 0.44 -0.8
693,404 - MPMX19_03338 0.48 +0.3
693,715 + MPMX19_03338 0.81 +0.9
693,716 - MPMX19_03338 0.81 -1.7
693,716 - MPMX19_03338 0.81 -1.5
693,716 - MPMX19_03338 0.81 +0.0

Or see this region's nucleotide sequence