Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03333

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03332 and MPMX19_03333 are separated by 32 nucleotidesMPMX19_03333 and MPMX19_03334 overlap by 4 nucleotides MPMX19_03332: MPMX19_03332 - hypothetical protein, at 684,594 to 687,026 _03332 MPMX19_03333: MPMX19_03333 - hypothetical protein, at 687,059 to 688,237 _03333 MPMX19_03334: MPMX19_03334 - Alanine racemase 1, at 688,234 to 689,343 _03334 Position (kb) 687 688 689Strain fitness (log2 ratio) -2 -1 0 1 2at 686.185 kb on + strand, within MPMX19_03332at 686.212 kb on + strand, within MPMX19_03332at 686.212 kb on + strand, within MPMX19_03332at 686.213 kb on - strand, within MPMX19_03332at 686.213 kb on - strand, within MPMX19_03332at 686.213 kb on - strand, within MPMX19_03332at 686.299 kb on + strand, within MPMX19_03332at 686.299 kb on + strand, within MPMX19_03332at 686.299 kb on + strand, within MPMX19_03332at 686.300 kb on - strand, within MPMX19_03332at 686.300 kb on - strand, within MPMX19_03332at 686.300 kb on - strand, within MPMX19_03332at 686.300 kb on - strand, within MPMX19_03332at 686.300 kb on - strand, within MPMX19_03332at 686.300 kb on - strand, within MPMX19_03332at 686.300 kb on - strand, within MPMX19_03332at 686.506 kb on + strand, within MPMX19_03332at 686.506 kb on + strand, within MPMX19_03332at 686.506 kb on + strand, within MPMX19_03332at 686.506 kb on + strand, within MPMX19_03332at 686.507 kb on - strand, within MPMX19_03332at 686.507 kb on - strand, within MPMX19_03332at 686.507 kb on - strand, within MPMX19_03332at 686.507 kb on - strand, within MPMX19_03332at 686.507 kb on - strand, within MPMX19_03332at 686.507 kb on - strand, within MPMX19_03332at 686.620 kb on + strand, within MPMX19_03332at 686.620 kb on + strand, within MPMX19_03332at 686.621 kb on - strand, within MPMX19_03332at 686.621 kb on - strand, within MPMX19_03332at 686.621 kb on - strand, within MPMX19_03332at 686.621 kb on - strand, within MPMX19_03332at 686.621 kb on - strand, within MPMX19_03332at 686.621 kb on - strand, within MPMX19_03332at 686.672 kb on - strand, within MPMX19_03332at 686.710 kb on + strand, within MPMX19_03332at 686.710 kb on + strand, within MPMX19_03332at 686.710 kb on + strand, within MPMX19_03332at 686.710 kb on + strand, within MPMX19_03332at 686.710 kb on + strand, within MPMX19_03332at 686.711 kb on - strand, within MPMX19_03332at 686.711 kb on - strand, within MPMX19_03332at 686.711 kb on - strand, within MPMX19_03332at 686.711 kb on - strand, within MPMX19_03332at 686.711 kb on - strand, within MPMX19_03332at 686.711 kb on - strand, within MPMX19_03332at 686.711 kb on - strand, within MPMX19_03332at 686.725 kb on + strand, within MPMX19_03332at 686.725 kb on + strand, within MPMX19_03332at 686.725 kb on + strand, within MPMX19_03332at 686.726 kb on - strand, within MPMX19_03332at 686.779 kb on + strand, within MPMX19_03332at 686.779 kb on + strand, within MPMX19_03332at 686.780 kb on - strand, within MPMX19_03332at 686.780 kb on - strand, within MPMX19_03332at 686.780 kb on - strand, within MPMX19_03332at 686.780 kb on - strand, within MPMX19_03332at 686.780 kb on - strand, within MPMX19_03332at 686.780 kb on - strand, within MPMX19_03332at 686.839 kb on + strandat 686.839 kb on + strandat 686.840 kb on - strandat 687.084 kb on + strandat 687.084 kb on + strandat 687.084 kb on + strandat 687.084 kb on + strandat 687.084 kb on + strandat 687.084 kb on + strandat 687.084 kb on + strandat 687.084 kb on + strandat 687.084 kb on + strandat 687.084 kb on + strandat 687.084 kb on + strandat 687.084 kb on + strandat 687.085 kb on - strandat 687.085 kb on - strandat 687.085 kb on - strandat 687.085 kb on - strandat 687.085 kb on - strandat 687.085 kb on - strandat 687.085 kb on - strandat 687.085 kb on - strandat 687.085 kb on - strandat 687.085 kb on - strandat 687.180 kb on + strand, within MPMX19_03333at 687.181 kb on - strand, within MPMX19_03333at 687.181 kb on - strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.402 kb on + strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.403 kb on - strand, within MPMX19_03333at 687.456 kb on + strand, within MPMX19_03333at 687.456 kb on + strand, within MPMX19_03333at 687.457 kb on - strand, within MPMX19_03333at 687.459 kb on + strand, within MPMX19_03333at 687.459 kb on + strand, within MPMX19_03333at 687.459 kb on + strand, within MPMX19_03333at 687.459 kb on + strand, within MPMX19_03333at 687.459 kb on + strand, within MPMX19_03333at 687.460 kb on - strand, within MPMX19_03333at 687.460 kb on - strand, within MPMX19_03333at 687.460 kb on - strand, within MPMX19_03333at 687.460 kb on - strand, within MPMX19_03333at 687.588 kb on + strand, within MPMX19_03333at 687.588 kb on + strand, within MPMX19_03333at 687.648 kb on + strand, within MPMX19_03333at 687.649 kb on - strand, within MPMX19_03333at 687.975 kb on + strand, within MPMX19_03333at 687.976 kb on - strand, within MPMX19_03333at 688.050 kb on + strand, within MPMX19_03333at 688.050 kb on + strand, within MPMX19_03333at 688.050 kb on + strand, within MPMX19_03333at 688.050 kb on + strand, within MPMX19_03333at 688.051 kb on - strand, within MPMX19_03333at 688.051 kb on - strand, within MPMX19_03333at 688.051 kb on - strand, within MPMX19_03333at 688.051 kb on - strand, within MPMX19_03333at 688.092 kb on + strand, within MPMX19_03333at 688.092 kb on + strand, within MPMX19_03333at 688.093 kb on - strand, within MPMX19_03333at 688.093 kb on - strand, within MPMX19_03333at 688.517 kb on + strand, within MPMX19_03334at 688.517 kb on + strand, within MPMX19_03334at 688.518 kb on - strand, within MPMX19_03334at 688.518 kb on - strand, within MPMX19_03334at 688.518 kb on - strand, within MPMX19_03334at 688.518 kb on - strand, within MPMX19_03334at 688.532 kb on + strand, within MPMX19_03334at 688.532 kb on + strand, within MPMX19_03334at 688.533 kb on - strand, within MPMX19_03334at 688.533 kb on - strand, within MPMX19_03334at 688.533 kb on - strand, within MPMX19_03334at 688.626 kb on - strand, within MPMX19_03334at 688.740 kb on - strand, within MPMX19_03334at 688.765 kb on - strand, within MPMX19_03334at 688.765 kb on - strand, within MPMX19_03334

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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686,185 + MPMX19_03332 0.65 +0.4
686,212 + MPMX19_03332 0.67 +0.3
686,212 + MPMX19_03332 0.67 +1.5
686,213 - MPMX19_03332 0.67 -1.4
686,213 - MPMX19_03332 0.67 -0.1
686,213 - MPMX19_03332 0.67 -0.7
686,299 + MPMX19_03332 0.70 -0.7
686,299 + MPMX19_03332 0.70 -2.0
686,299 + MPMX19_03332 0.70 +1.4
686,300 - MPMX19_03332 0.70 -0.8
686,300 - MPMX19_03332 0.70 +1.0
686,300 - MPMX19_03332 0.70 -1.9
686,300 - MPMX19_03332 0.70 -0.9
686,300 - MPMX19_03332 0.70 -0.6
686,300 - MPMX19_03332 0.70 +1.0
686,300 - MPMX19_03332 0.70 -1.6
686,506 + MPMX19_03332 0.79 -0.3
686,506 + MPMX19_03332 0.79 -0.9
686,506 + MPMX19_03332 0.79 -1.0
686,506 + MPMX19_03332 0.79 +0.4
686,507 - MPMX19_03332 0.79 -1.2
686,507 - MPMX19_03332 0.79 -0.1
686,507 - MPMX19_03332 0.79 -1.4
686,507 - MPMX19_03332 0.79 -1.3
686,507 - MPMX19_03332 0.79 -0.6
686,507 - MPMX19_03332 0.79 -1.4
686,620 + MPMX19_03332 0.83 +0.6
686,620 + MPMX19_03332 0.83 -0.6
686,621 - MPMX19_03332 0.83 +0.1
686,621 - MPMX19_03332 0.83 -2.1
686,621 - MPMX19_03332 0.83 +0.1
686,621 - MPMX19_03332 0.83 +0.2
686,621 - MPMX19_03332 0.83 -1.3
686,621 - MPMX19_03332 0.83 -0.4
686,672 - MPMX19_03332 0.85 -0.3
686,710 + MPMX19_03332 0.87 -1.1
686,710 + MPMX19_03332 0.87 -0.3
686,710 + MPMX19_03332 0.87 -0.7
686,710 + MPMX19_03332 0.87 -1.4
686,710 + MPMX19_03332 0.87 -1.8
686,711 - MPMX19_03332 0.87 -1.8
686,711 - MPMX19_03332 0.87 -1.7
686,711 - MPMX19_03332 0.87 -1.9
686,711 - MPMX19_03332 0.87 +0.0
686,711 - MPMX19_03332 0.87 -0.6
686,711 - MPMX19_03332 0.87 -0.6
686,711 - MPMX19_03332 0.87 -0.1
686,725 + MPMX19_03332 0.88 -1.2
686,725 + MPMX19_03332 0.88 -2.6
686,725 + MPMX19_03332 0.88 -0.3
686,726 - MPMX19_03332 0.88 -0.1
686,779 + MPMX19_03332 0.90 -0.3
686,779 + MPMX19_03332 0.90 +0.0
686,780 - MPMX19_03332 0.90 -2.1
686,780 - MPMX19_03332 0.90 -0.4
686,780 - MPMX19_03332 0.90 +1.2
686,780 - MPMX19_03332 0.90 +0.1
686,780 - MPMX19_03332 0.90 -0.2
686,780 - MPMX19_03332 0.90 +0.2
686,839 + +1.2
686,839 + -0.7
686,840 - -0.4
687,084 + +0.1
687,084 + -0.4
687,084 + -0.2
687,084 + +2.3
687,084 + +0.0
687,084 + -1.4
687,084 + +1.6
687,084 + +0.6
687,084 + -0.8
687,084 + -1.2
687,084 + -1.0
687,084 + -0.3
687,085 - -1.2
687,085 - -2.6
687,085 - -0.2
687,085 - -0.8
687,085 - -1.8
687,085 - -1.3
687,085 - -1.0
687,085 - -0.3
687,085 - -1.0
687,085 - -0.6
687,180 + MPMX19_03333 0.10 -0.8
687,181 - MPMX19_03333 0.10 +0.3
687,181 - MPMX19_03333 0.10 -0.4
687,402 + MPMX19_03333 0.29 -1.6
687,402 + MPMX19_03333 0.29 -0.7
687,402 + MPMX19_03333 0.29 -0.9
687,402 + MPMX19_03333 0.29 -0.6
687,402 + MPMX19_03333 0.29 -0.4
687,402 + MPMX19_03333 0.29 +0.6
687,402 + MPMX19_03333 0.29 -1.1
687,402 + MPMX19_03333 0.29 +0.3
687,402 + MPMX19_03333 0.29 -1.2
687,402 + MPMX19_03333 0.29 -1.2
687,402 + MPMX19_03333 0.29 -2.3
687,402 + MPMX19_03333 0.29 -0.1
687,402 + MPMX19_03333 0.29 -0.3
687,402 + MPMX19_03333 0.29 -0.4
687,402 + MPMX19_03333 0.29 -0.8
687,402 + MPMX19_03333 0.29 -1.4
687,402 + MPMX19_03333 0.29 -0.8
687,402 + MPMX19_03333 0.29 -1.2
687,402 + MPMX19_03333 0.29 -0.3
687,402 + MPMX19_03333 0.29 +1.2
687,402 + MPMX19_03333 0.29 -0.9
687,402 + MPMX19_03333 0.29 -0.8
687,402 + MPMX19_03333 0.29 -1.0
687,403 - MPMX19_03333 0.29 +0.0
687,403 - MPMX19_03333 0.29 +0.0
687,403 - MPMX19_03333 0.29 -1.7
687,403 - MPMX19_03333 0.29 -1.2
687,403 - MPMX19_03333 0.29 +0.7
687,403 - MPMX19_03333 0.29 -0.9
687,403 - MPMX19_03333 0.29 -0.8
687,403 - MPMX19_03333 0.29 -1.9
687,403 - MPMX19_03333 0.29 -0.4
687,403 - MPMX19_03333 0.29 -2.0
687,403 - MPMX19_03333 0.29 -0.2
687,403 - MPMX19_03333 0.29 -0.2
687,456 + MPMX19_03333 0.34 -0.7
687,456 + MPMX19_03333 0.34 -1.3
687,457 - MPMX19_03333 0.34 -2.2
687,459 + MPMX19_03333 0.34 -1.1
687,459 + MPMX19_03333 0.34 -1.8
687,459 + MPMX19_03333 0.34 +1.5
687,459 + MPMX19_03333 0.34 -0.2
687,459 + MPMX19_03333 0.34 -1.2
687,460 - MPMX19_03333 0.34 -1.2
687,460 - MPMX19_03333 0.34 +0.4
687,460 - MPMX19_03333 0.34 +1.0
687,460 - MPMX19_03333 0.34 -0.5
687,588 + MPMX19_03333 0.45 +0.5
687,588 + MPMX19_03333 0.45 -1.8
687,648 + MPMX19_03333 0.50 +0.2
687,649 - MPMX19_03333 0.50 +0.0
687,975 + MPMX19_03333 0.78 -0.3
687,976 - MPMX19_03333 0.78 +0.0
688,050 + MPMX19_03333 0.84 -0.9
688,050 + MPMX19_03333 0.84 -0.8
688,050 + MPMX19_03333 0.84 -0.9
688,050 + MPMX19_03333 0.84 -0.8
688,051 - MPMX19_03333 0.84 -0.2
688,051 - MPMX19_03333 0.84 +0.1
688,051 - MPMX19_03333 0.84 +0.8
688,051 - MPMX19_03333 0.84 +0.1
688,092 + MPMX19_03333 0.88 +0.4
688,092 + MPMX19_03333 0.88 +0.1
688,093 - MPMX19_03333 0.88 -0.1
688,093 - MPMX19_03333 0.88 -1.0
688,517 + MPMX19_03334 0.25 +0.3
688,517 + MPMX19_03334 0.25 +0.0
688,518 - MPMX19_03334 0.26 -1.5
688,518 - MPMX19_03334 0.26 +0.6
688,518 - MPMX19_03334 0.26 -1.0
688,518 - MPMX19_03334 0.26 +0.2
688,532 + MPMX19_03334 0.27 -0.1
688,532 + MPMX19_03334 0.27 -0.8
688,533 - MPMX19_03334 0.27 +0.2
688,533 - MPMX19_03334 0.27 -1.4
688,533 - MPMX19_03334 0.27 -1.5
688,626 - MPMX19_03334 0.35 -1.6
688,740 - MPMX19_03334 0.46 +2.2
688,765 - MPMX19_03334 0.48 -1.7
688,765 - MPMX19_03334 0.48 -0.3

Or see this region's nucleotide sequence