Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03314

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03313 and MPMX19_03314 are separated by 92 nucleotidesMPMX19_03314 and MPMX19_03315 are separated by 147 nucleotides MPMX19_03313: MPMX19_03313 - Ureidoglycolate lyase, at 660,966 to 661,811 _03313 MPMX19_03314: MPMX19_03314 - 2-keto-3-deoxy-L-fuconate dehydrogenase, at 661,904 to 662,647 _03314 MPMX19_03315: MPMX19_03315 - Transcriptional regulator KdgR, at 662,795 to 663,610 _03315 Position (kb) 661 662 663Strain fitness (log2 ratio) -2 -1 0 1at 660.979 kb on + strandat 660.979 kb on + strandat 660.980 kb on - strandat 661.045 kb on + strandat 661.045 kb on + strandat 661.045 kb on + strandat 661.046 kb on - strandat 661.046 kb on - strandat 661.135 kb on + strand, within MPMX19_03313at 661.135 kb on + strand, within MPMX19_03313at 661.135 kb on + strand, within MPMX19_03313at 661.135 kb on + strand, within MPMX19_03313at 661.136 kb on - strand, within MPMX19_03313at 661.136 kb on - strand, within MPMX19_03313at 661.136 kb on - strand, within MPMX19_03313at 661.136 kb on - strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.160 kb on - strand, within MPMX19_03313at 661.160 kb on - strand, within MPMX19_03313at 661.364 kb on - strand, within MPMX19_03313at 661.402 kb on + strand, within MPMX19_03313at 661.402 kb on + strand, within MPMX19_03313at 661.402 kb on + strand, within MPMX19_03313at 661.402 kb on + strand, within MPMX19_03313at 661.402 kb on + strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.573 kb on + strand, within MPMX19_03313at 661.573 kb on + strand, within MPMX19_03313at 661.574 kb on - strand, within MPMX19_03313at 661.745 kb on + strandat 661.746 kb on - strandat 661.811 kb on + strandat 661.811 kb on + strandat 661.811 kb on + strandat 661.812 kb on - strandat 661.812 kb on - strandat 661.812 kb on - strandat 661.812 kb on - strandat 661.909 kb on + strandat 661.910 kb on - strandat 661.910 kb on - strandat 661.977 kb on + strandat 661.978 kb on - strandat 661.978 kb on - strandat 662.038 kb on + strand, within MPMX19_03314at 662.061 kb on + strand, within MPMX19_03314at 662.062 kb on - strand, within MPMX19_03314at 662.151 kb on + strand, within MPMX19_03314at 662.151 kb on + strand, within MPMX19_03314at 662.151 kb on + strand, within MPMX19_03314at 662.151 kb on + strand, within MPMX19_03314at 662.151 kb on + strand, within MPMX19_03314at 662.152 kb on - strand, within MPMX19_03314at 662.152 kb on - strand, within MPMX19_03314at 662.152 kb on - strand, within MPMX19_03314at 662.205 kb on + strand, within MPMX19_03314at 662.205 kb on + strand, within MPMX19_03314at 662.316 kb on + strand, within MPMX19_03314at 662.317 kb on - strand, within MPMX19_03314at 662.317 kb on - strand, within MPMX19_03314at 662.394 kb on + strand, within MPMX19_03314at 662.394 kb on + strand, within MPMX19_03314at 662.395 kb on - strand, within MPMX19_03314at 662.395 kb on - strand, within MPMX19_03314at 662.395 kb on - strand, within MPMX19_03314at 662.821 kb on + strandat 662.822 kb on - strandat 662.892 kb on + strand, within MPMX19_03315at 662.892 kb on + strand, within MPMX19_03315at 663.075 kb on + strand, within MPMX19_03315at 663.075 kb on + strand, within MPMX19_03315at 663.075 kb on + strand, within MPMX19_03315at 663.075 kb on + strand, within MPMX19_03315at 663.076 kb on - strand, within MPMX19_03315at 663.076 kb on - strand, within MPMX19_03315at 663.076 kb on - strand, within MPMX19_03315at 663.076 kb on - strand, within MPMX19_03315at 663.076 kb on - strand, within MPMX19_03315at 663.249 kb on + strand, within MPMX19_03315at 663.249 kb on + strand, within MPMX19_03315at 663.250 kb on - strand, within MPMX19_03315at 663.250 kb on - strand, within MPMX19_03315at 663.386 kb on - strand, within MPMX19_03315at 663.386 kb on - strand, within MPMX19_03315at 663.386 kb on - strand, within MPMX19_03315at 663.387 kb on + strand, within MPMX19_03315at 663.387 kb on + strand, within MPMX19_03315at 663.388 kb on - strand, within MPMX19_03315at 663.388 kb on - strand, within MPMX19_03315at 663.388 kb on - strand, within MPMX19_03315at 663.647 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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660,979 + -0.3
660,979 + +0.7
660,980 - -0.8
661,045 + +0.0
661,045 + -1.1
661,045 + -1.1
661,046 - +0.1
661,046 - -2.6
661,135 + MPMX19_03313 0.20 -0.8
661,135 + MPMX19_03313 0.20 -1.3
661,135 + MPMX19_03313 0.20 +0.2
661,135 + MPMX19_03313 0.20 -0.3
661,136 - MPMX19_03313 0.20 -1.5
661,136 - MPMX19_03313 0.20 -0.7
661,136 - MPMX19_03313 0.20 -1.1
661,136 - MPMX19_03313 0.20 -0.0
661,159 + MPMX19_03313 0.23 -1.1
661,159 + MPMX19_03313 0.23 +0.7
661,159 + MPMX19_03313 0.23 +0.0
661,159 + MPMX19_03313 0.23 -0.4
661,159 + MPMX19_03313 0.23 -0.8
661,159 + MPMX19_03313 0.23 -1.3
661,160 - MPMX19_03313 0.23 +0.2
661,160 - MPMX19_03313 0.23 -1.7
661,364 - MPMX19_03313 0.47 -0.8
661,402 + MPMX19_03313 0.52 -0.1
661,402 + MPMX19_03313 0.52 +0.0
661,402 + MPMX19_03313 0.52 +1.5
661,402 + MPMX19_03313 0.52 +0.0
661,402 + MPMX19_03313 0.52 -0.4
661,403 - MPMX19_03313 0.52 +0.3
661,403 - MPMX19_03313 0.52 +0.8
661,403 - MPMX19_03313 0.52 -1.0
661,403 - MPMX19_03313 0.52 +0.7
661,403 - MPMX19_03313 0.52 +0.7
661,403 - MPMX19_03313 0.52 -2.6
661,403 - MPMX19_03313 0.52 +0.1
661,403 - MPMX19_03313 0.52 +0.3
661,403 - MPMX19_03313 0.52 -0.8
661,403 - MPMX19_03313 0.52 -2.2
661,403 - MPMX19_03313 0.52 -2.5
661,403 - MPMX19_03313 0.52 -1.0
661,403 - MPMX19_03313 0.52 -1.1
661,403 - MPMX19_03313 0.52 -0.3
661,403 - MPMX19_03313 0.52 -0.1
661,403 - MPMX19_03313 0.52 -1.5
661,573 + MPMX19_03313 0.72 +0.7
661,573 + MPMX19_03313 0.72 -1.1
661,574 - MPMX19_03313 0.72 -1.1
661,745 + -0.4
661,746 - +1.2
661,811 + -0.8
661,811 + -0.5
661,811 + +0.3
661,812 - -1.1
661,812 - -1.0
661,812 - -0.0
661,812 - -2.3
661,909 + -1.0
661,910 - +0.7
661,910 - -0.2
661,977 + +0.2
661,978 - +0.2
661,978 - -1.9
662,038 + MPMX19_03314 0.18 -1.8
662,061 + MPMX19_03314 0.21 -0.8
662,062 - MPMX19_03314 0.21 -1.9
662,151 + MPMX19_03314 0.33 -0.8
662,151 + MPMX19_03314 0.33 +0.5
662,151 + MPMX19_03314 0.33 -2.2
662,151 + MPMX19_03314 0.33 +1.5
662,151 + MPMX19_03314 0.33 +0.5
662,152 - MPMX19_03314 0.33 +0.0
662,152 - MPMX19_03314 0.33 -0.4
662,152 - MPMX19_03314 0.33 -1.4
662,205 + MPMX19_03314 0.40 -1.0
662,205 + MPMX19_03314 0.40 -1.1
662,316 + MPMX19_03314 0.55 -1.5
662,317 - MPMX19_03314 0.56 -0.5
662,317 - MPMX19_03314 0.56 -0.3
662,394 + MPMX19_03314 0.66 -1.9
662,394 + MPMX19_03314 0.66 -2.5
662,395 - MPMX19_03314 0.66 -1.8
662,395 - MPMX19_03314 0.66 -0.4
662,395 - MPMX19_03314 0.66 -0.8
662,821 + -1.5
662,822 - -1.3
662,892 + MPMX19_03315 0.12 -0.1
662,892 + MPMX19_03315 0.12 +0.2
663,075 + MPMX19_03315 0.34 -1.1
663,075 + MPMX19_03315 0.34 -0.5
663,075 + MPMX19_03315 0.34 +0.4
663,075 + MPMX19_03315 0.34 -2.0
663,076 - MPMX19_03315 0.34 -0.6
663,076 - MPMX19_03315 0.34 -0.9
663,076 - MPMX19_03315 0.34 -1.9
663,076 - MPMX19_03315 0.34 +0.2
663,076 - MPMX19_03315 0.34 +0.3
663,249 + MPMX19_03315 0.56 -1.4
663,249 + MPMX19_03315 0.56 -1.4
663,250 - MPMX19_03315 0.56 -2.1
663,250 - MPMX19_03315 0.56 +0.3
663,386 - MPMX19_03315 0.72 -1.6
663,386 - MPMX19_03315 0.72 -0.1
663,386 - MPMX19_03315 0.72 -1.0
663,387 + MPMX19_03315 0.73 -1.5
663,387 + MPMX19_03315 0.73 -0.3
663,388 - MPMX19_03315 0.73 -0.1
663,388 - MPMX19_03315 0.73 -1.4
663,388 - MPMX19_03315 0.73 -1.3
663,647 + -0.8

Or see this region's nucleotide sequence