Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03309

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03307 and MPMX19_03308 are separated by 42 nucleotidesMPMX19_03308 and MPMX19_03309 are separated by 4 nucleotidesMPMX19_03309 and MPMX19_03310 are separated by 121 nucleotides MPMX19_03307: MPMX19_03307 - Galactarate dehydratase (L-threo-forming), at 653,660 to 655,186 _03307 MPMX19_03308: MPMX19_03308 - hypothetical protein, at 655,229 to 656,044 _03308 MPMX19_03309: MPMX19_03309 - Pyridoxal 4-dehydrogenase, at 656,049 to 657,074 _03309 MPMX19_03310: MPMX19_03310 - Ribose import binding protein RbsB, at 657,196 to 658,140 _03310 Position (kb) 656 657 658Strain fitness (log2 ratio) -3 -2 -1 0 1at 655.242 kb on + strandat 655.243 kb on - strandat 655.410 kb on + strand, within MPMX19_03308at 655.410 kb on + strand, within MPMX19_03308at 655.410 kb on + strand, within MPMX19_03308at 655.410 kb on + strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.666 kb on + strand, within MPMX19_03308at 655.667 kb on - strand, within MPMX19_03308at 656.314 kb on + strand, within MPMX19_03309at 656.314 kb on + strand, within MPMX19_03309at 656.314 kb on + strand, within MPMX19_03309at 656.315 kb on - strand, within MPMX19_03309at 656.437 kb on + strand, within MPMX19_03309at 656.437 kb on + strand, within MPMX19_03309at 656.437 kb on + strand, within MPMX19_03309at 656.438 kb on - strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.719 kb on + strand, within MPMX19_03309at 656.719 kb on + strand, within MPMX19_03309at 656.719 kb on + strand, within MPMX19_03309at 656.719 kb on + strand, within MPMX19_03309at 656.720 kb on - strand, within MPMX19_03309at 656.720 kb on - strand, within MPMX19_03309at 656.720 kb on - strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.726 kb on - strand, within MPMX19_03309at 656.726 kb on - strand, within MPMX19_03309at 656.899 kb on + strand, within MPMX19_03309at 656.900 kb on - strand, within MPMX19_03309at 656.900 kb on - strand, within MPMX19_03309at 656.902 kb on + strand, within MPMX19_03309at 656.902 kb on + strand, within MPMX19_03309at 656.903 kb on - strand, within MPMX19_03309at 656.920 kb on + strand, within MPMX19_03309at 657.200 kb on + strandat 657.200 kb on + strandat 657.201 kb on - strandat 657.323 kb on + strand, within MPMX19_03310at 657.323 kb on + strand, within MPMX19_03310at 657.323 kb on + strand, within MPMX19_03310at 657.324 kb on - strand, within MPMX19_03310at 657.324 kb on - strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.612 kb on - strand, within MPMX19_03310at 657.612 kb on - strand, within MPMX19_03310at 657.612 kb on - strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.764 kb on + strand, within MPMX19_03310at 657.764 kb on + strand, within MPMX19_03310at 657.764 kb on + strand, within MPMX19_03310at 657.765 kb on - strand, within MPMX19_03310at 657.767 kb on + strand, within MPMX19_03310at 657.767 kb on + strand, within MPMX19_03310at 657.767 kb on + strand, within MPMX19_03310at 657.767 kb on + strand, within MPMX19_03310at 657.768 kb on - strand, within MPMX19_03310at 657.768 kb on - strand, within MPMX19_03310at 657.974 kb on + strand, within MPMX19_03310

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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655,242 + -0.3
655,243 - +0.8
655,410 + MPMX19_03308 0.22 -1.0
655,410 + MPMX19_03308 0.22 -0.1
655,410 + MPMX19_03308 0.22 -0.8
655,410 + MPMX19_03308 0.22 -0.1
655,411 - MPMX19_03308 0.22 -0.6
655,411 - MPMX19_03308 0.22 -0.1
655,411 - MPMX19_03308 0.22 +1.0
655,411 - MPMX19_03308 0.22 +0.2
655,411 - MPMX19_03308 0.22 +0.8
655,411 - MPMX19_03308 0.22 +1.6
655,666 + MPMX19_03308 0.54 -0.3
655,667 - MPMX19_03308 0.54 -0.4
656,314 + MPMX19_03309 0.26 +0.5
656,314 + MPMX19_03309 0.26 -0.4
656,314 + MPMX19_03309 0.26 -0.4
656,315 - MPMX19_03309 0.26 +1.6
656,437 + MPMX19_03309 0.38 +0.2
656,437 + MPMX19_03309 0.38 +0.0
656,437 + MPMX19_03309 0.38 -1.0
656,438 - MPMX19_03309 0.38 +0.5
656,456 + MPMX19_03309 0.40 -1.5
656,456 + MPMX19_03309 0.40 -0.3
656,456 + MPMX19_03309 0.40 -0.5
656,456 + MPMX19_03309 0.40 -0.1
656,456 + MPMX19_03309 0.40 +0.1
656,456 + MPMX19_03309 0.40 -0.3
656,456 + MPMX19_03309 0.40 -0.1
656,456 + MPMX19_03309 0.40 +0.9
656,456 + MPMX19_03309 0.40 -0.1
656,456 + MPMX19_03309 0.40 +1.3
656,457 - MPMX19_03309 0.40 -0.5
656,457 - MPMX19_03309 0.40 -1.1
656,457 - MPMX19_03309 0.40 +1.1
656,457 - MPMX19_03309 0.40 +0.5
656,457 - MPMX19_03309 0.40 -0.3
656,457 - MPMX19_03309 0.40 -0.4
656,644 + MPMX19_03309 0.58 -1.9
656,644 + MPMX19_03309 0.58 +0.3
656,644 + MPMX19_03309 0.58 +0.5
656,644 + MPMX19_03309 0.58 +0.3
656,644 + MPMX19_03309 0.58 -0.5
656,644 + MPMX19_03309 0.58 -0.8
656,645 - MPMX19_03309 0.58 -0.3
656,645 - MPMX19_03309 0.58 -1.0
656,645 - MPMX19_03309 0.58 +1.7
656,645 - MPMX19_03309 0.58 -1.4
656,645 - MPMX19_03309 0.58 -0.3
656,645 - MPMX19_03309 0.58 +0.6
656,719 + MPMX19_03309 0.65 -1.0
656,719 + MPMX19_03309 0.65 -1.1
656,719 + MPMX19_03309 0.65 +1.0
656,719 + MPMX19_03309 0.65 +0.0
656,720 - MPMX19_03309 0.65 -1.4
656,720 - MPMX19_03309 0.65 +0.2
656,720 - MPMX19_03309 0.65 -0.4
656,725 + MPMX19_03309 0.66 +0.2
656,725 + MPMX19_03309 0.66 -0.0
656,725 + MPMX19_03309 0.66 +0.0
656,725 + MPMX19_03309 0.66 -0.8
656,725 + MPMX19_03309 0.66 -0.6
656,725 + MPMX19_03309 0.66 -0.3
656,725 + MPMX19_03309 0.66 +0.0
656,725 + MPMX19_03309 0.66 -0.8
656,725 + MPMX19_03309 0.66 -0.2
656,726 - MPMX19_03309 0.66 -0.1
656,726 - MPMX19_03309 0.66 +0.0
656,899 + MPMX19_03309 0.83 -0.5
656,900 - MPMX19_03309 0.83 +0.4
656,900 - MPMX19_03309 0.83 +1.0
656,902 + MPMX19_03309 0.83 -0.3
656,902 + MPMX19_03309 0.83 -1.0
656,903 - MPMX19_03309 0.83 -0.7
656,920 + MPMX19_03309 0.85 -1.1
657,200 + -0.4
657,200 + -2.1
657,201 - +0.6
657,323 + MPMX19_03310 0.13 +1.2
657,323 + MPMX19_03310 0.13 -0.7
657,323 + MPMX19_03310 0.13 -0.3
657,324 - MPMX19_03310 0.14 -0.8
657,324 - MPMX19_03310 0.14 -0.7
657,569 + MPMX19_03310 0.39 +0.8
657,569 + MPMX19_03310 0.39 -0.8
657,569 + MPMX19_03310 0.39 +0.6
657,569 + MPMX19_03310 0.39 +0.4
657,569 + MPMX19_03310 0.39 +1.3
657,569 + MPMX19_03310 0.39 -1.2
657,569 + MPMX19_03310 0.39 -0.1
657,569 + MPMX19_03310 0.39 -0.8
657,569 + MPMX19_03310 0.39 -0.4
657,570 - MPMX19_03310 0.40 -1.1
657,570 - MPMX19_03310 0.40 -1.7
657,570 - MPMX19_03310 0.40 -1.0
657,570 - MPMX19_03310 0.40 -0.5
657,570 - MPMX19_03310 0.40 +0.6
657,570 - MPMX19_03310 0.40 -0.2
657,611 + MPMX19_03310 0.44 +0.6
657,611 + MPMX19_03310 0.44 -0.1
657,611 + MPMX19_03310 0.44 +0.0
657,611 + MPMX19_03310 0.44 -1.4
657,611 + MPMX19_03310 0.44 +0.7
657,611 + MPMX19_03310 0.44 -1.0
657,612 - MPMX19_03310 0.44 -0.9
657,612 - MPMX19_03310 0.44 -0.4
657,612 - MPMX19_03310 0.44 -1.0
657,662 + MPMX19_03310 0.49 +0.6
657,662 + MPMX19_03310 0.49 -1.4
657,662 + MPMX19_03310 0.49 +0.2
657,662 + MPMX19_03310 0.49 -1.0
657,662 + MPMX19_03310 0.49 +0.9
657,662 + MPMX19_03310 0.49 -0.9
657,662 + MPMX19_03310 0.49 -0.6
657,662 + MPMX19_03310 0.49 +0.4
657,662 + MPMX19_03310 0.49 +0.6
657,662 + MPMX19_03310 0.49 -0.3
657,662 + MPMX19_03310 0.49 +0.0
657,662 + MPMX19_03310 0.49 +0.2
657,662 + MPMX19_03310 0.49 -2.1
657,663 - MPMX19_03310 0.49 -0.8
657,663 - MPMX19_03310 0.49 -0.6
657,663 - MPMX19_03310 0.49 -0.1
657,663 - MPMX19_03310 0.49 -1.0
657,663 - MPMX19_03310 0.49 -0.8
657,663 - MPMX19_03310 0.49 -1.9
657,663 - MPMX19_03310 0.49 -1.5
657,663 - MPMX19_03310 0.49 -0.4
657,663 - MPMX19_03310 0.49 -0.5
657,663 - MPMX19_03310 0.49 +0.2
657,663 - MPMX19_03310 0.49 +0.5
657,663 - MPMX19_03310 0.49 +1.0
657,663 - MPMX19_03310 0.49 -0.1
657,764 + MPMX19_03310 0.60 -0.2
657,764 + MPMX19_03310 0.60 +0.3
657,764 + MPMX19_03310 0.60 -1.1
657,765 - MPMX19_03310 0.60 -0.8
657,767 + MPMX19_03310 0.60 -0.2
657,767 + MPMX19_03310 0.60 -0.5
657,767 + MPMX19_03310 0.60 -1.4
657,767 + MPMX19_03310 0.60 -2.8
657,768 - MPMX19_03310 0.61 +0.0
657,768 - MPMX19_03310 0.61 -0.1
657,974 + MPMX19_03310 0.82 -1.9

Or see this region's nucleotide sequence