Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03284

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03283 and MPMX19_03284 are separated by 59 nucleotidesMPMX19_03284 and MPMX19_03285 overlap by 4 nucleotides MPMX19_03283: MPMX19_03283 - Glutamate-1-semialdehyde 2,1-aminomutase, at 628,643 to 629,956 _03283 MPMX19_03284: MPMX19_03284 - Apulose-4-phosphate transketolase subunit B, at 630,016 to 631,047 _03284 MPMX19_03285: MPMX19_03285 - Apulose-4-phosphate transketolase subunit A, at 631,044 to 632,012 _03285 Position (kb) 630 631 632Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 629.202 kb on + strand, within MPMX19_03283at 629.382 kb on + strand, within MPMX19_03283at 629.382 kb on + strand, within MPMX19_03283at 629.383 kb on - strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.410 kb on - strand, within MPMX19_03283at 629.410 kb on - strand, within MPMX19_03283at 629.410 kb on - strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.514 kb on + strand, within MPMX19_03283at 629.514 kb on + strand, within MPMX19_03283at 629.514 kb on + strand, within MPMX19_03283at 629.515 kb on - strand, within MPMX19_03283at 629.515 kb on - strand, within MPMX19_03283at 629.533 kb on - strand, within MPMX19_03283at 629.598 kb on + strand, within MPMX19_03283at 629.598 kb on + strand, within MPMX19_03283at 629.598 kb on + strand, within MPMX19_03283at 629.598 kb on + strand, within MPMX19_03283at 629.598 kb on + strand, within MPMX19_03283at 629.598 kb on + strand, within MPMX19_03283at 629.598 kb on + strand, within MPMX19_03283at 629.598 kb on + strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.796 kb on + strand, within MPMX19_03283at 629.796 kb on + strand, within MPMX19_03283at 629.796 kb on + strand, within MPMX19_03283at 629.797 kb on - strand, within MPMX19_03283at 629.803 kb on + strand, within MPMX19_03283at 629.803 kb on + strand, within MPMX19_03283at 629.803 kb on + strand, within MPMX19_03283at 629.803 kb on + strand, within MPMX19_03283at 629.804 kb on - strand, within MPMX19_03283at 629.804 kb on - strand, within MPMX19_03283at 629.804 kb on - strand, within MPMX19_03283at 629.804 kb on - strand, within MPMX19_03283at 629.804 kb on - strand, within MPMX19_03283at 629.804 kb on - strand, within MPMX19_03283at 629.804 kb on - strand, within MPMX19_03283at 629.804 kb on - strand, within MPMX19_03283at 629.827 kb on - strandat 629.827 kb on - strandat 629.827 kb on - strandat 629.832 kb on + strandat 629.833 kb on - strandat 629.833 kb on - strandat 629.859 kb on + strandat 629.859 kb on + strandat 629.859 kb on + strandat 629.859 kb on + strandat 629.859 kb on + strandat 629.859 kb on + strandat 629.859 kb on + strandat 629.859 kb on + strandat 629.860 kb on - strandat 629.860 kb on - strandat 629.860 kb on - strandat 629.860 kb on - strandat 629.860 kb on - strandat 629.860 kb on - strandat 629.860 kb on - strandat 629.860 kb on - strandat 629.860 kb on - strandat 630.068 kb on + strandat 630.078 kb on - strandat 630.107 kb on + strandat 630.107 kb on + strandat 630.107 kb on + strandat 630.438 kb on - strand, within MPMX19_03284at 630.473 kb on + strand, within MPMX19_03284at 630.474 kb on - strand, within MPMX19_03284at 630.474 kb on - strand, within MPMX19_03284at 630.474 kb on - strand, within MPMX19_03284at 630.474 kb on - strand, within MPMX19_03284at 630.474 kb on - strand, within MPMX19_03284at 630.474 kb on - strand, within MPMX19_03284at 630.474 kb on - strand, within MPMX19_03284at 630.608 kb on + strand, within MPMX19_03284at 630.608 kb on + strand, within MPMX19_03284at 630.609 kb on - strand, within MPMX19_03284at 630.609 kb on - strand, within MPMX19_03284at 630.609 kb on - strand, within MPMX19_03284at 630.609 kb on - strand, within MPMX19_03284at 630.609 kb on - strand, within MPMX19_03284at 630.609 kb on - strand, within MPMX19_03284at 630.665 kb on + strand, within MPMX19_03284at 630.666 kb on - strand, within MPMX19_03284at 630.851 kb on + strand, within MPMX19_03284at 630.852 kb on - strand, within MPMX19_03284at 630.852 kb on - strand, within MPMX19_03284at 630.852 kb on - strand, within MPMX19_03284at 630.923 kb on + strand, within MPMX19_03284at 630.923 kb on + strand, within MPMX19_03284at 630.923 kb on + strand, within MPMX19_03284at 630.923 kb on + strand, within MPMX19_03284at 630.923 kb on + strand, within MPMX19_03284at 630.923 kb on + strand, within MPMX19_03284at 630.924 kb on - strand, within MPMX19_03284at 630.924 kb on - strand, within MPMX19_03284at 630.924 kb on - strand, within MPMX19_03284at 630.924 kb on - strand, within MPMX19_03284at 631.148 kb on - strand, within MPMX19_03285at 631.180 kb on + strand, within MPMX19_03285at 631.180 kb on + strand, within MPMX19_03285at 631.181 kb on - strand, within MPMX19_03285at 631.181 kb on - strand, within MPMX19_03285at 631.384 kb on + strand, within MPMX19_03285at 631.384 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.495 kb on + strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.496 kb on - strand, within MPMX19_03285at 631.645 kb on + strand, within MPMX19_03285at 631.645 kb on + strand, within MPMX19_03285at 631.645 kb on + strand, within MPMX19_03285at 631.646 kb on - strand, within MPMX19_03285at 631.646 kb on - strand, within MPMX19_03285at 631.697 kb on - strand, within MPMX19_03285at 631.697 kb on - strand, within MPMX19_03285at 631.786 kb on + strand, within MPMX19_03285at 631.786 kb on + strand, within MPMX19_03285at 631.786 kb on + strand, within MPMX19_03285at 631.786 kb on + strand, within MPMX19_03285at 631.786 kb on + strand, within MPMX19_03285at 631.786 kb on + strand, within MPMX19_03285at 631.786 kb on + strand, within MPMX19_03285at 631.787 kb on - strand, within MPMX19_03285at 631.787 kb on - strand, within MPMX19_03285at 631.789 kb on + strand, within MPMX19_03285at 631.789 kb on + strand, within MPMX19_03285at 631.789 kb on + strand, within MPMX19_03285at 631.789 kb on + strand, within MPMX19_03285at 631.789 kb on + strand, within MPMX19_03285at 631.789 kb on + strand, within MPMX19_03285at 631.789 kb on + strand, within MPMX19_03285at 631.789 kb on + strand, within MPMX19_03285at 631.790 kb on - strand, within MPMX19_03285at 631.831 kb on + strand, within MPMX19_03285at 631.831 kb on + strand, within MPMX19_03285at 631.831 kb on + strand, within MPMX19_03285at 631.831 kb on + strand, within MPMX19_03285at 631.832 kb on - strand, within MPMX19_03285

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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629,202 + MPMX19_03283 0.43 -0.0
629,382 + MPMX19_03283 0.56 -0.4
629,382 + MPMX19_03283 0.56 -0.9
629,383 - MPMX19_03283 0.56 -1.1
629,409 + MPMX19_03283 0.58 -0.9
629,409 + MPMX19_03283 0.58 -0.3
629,409 + MPMX19_03283 0.58 +0.3
629,409 + MPMX19_03283 0.58 -0.1
629,409 + MPMX19_03283 0.58 -0.7
629,409 + MPMX19_03283 0.58 -0.6
629,410 - MPMX19_03283 0.58 +0.6
629,410 - MPMX19_03283 0.58 -1.6
629,410 - MPMX19_03283 0.58 -1.4
629,425 + MPMX19_03283 0.60 -0.7
629,425 + MPMX19_03283 0.60 +0.2
629,425 + MPMX19_03283 0.60 +0.1
629,425 + MPMX19_03283 0.60 -0.1
629,425 + MPMX19_03283 0.60 -0.9
629,425 + MPMX19_03283 0.60 -0.2
629,426 - MPMX19_03283 0.60 -1.2
629,426 - MPMX19_03283 0.60 -0.4
629,426 - MPMX19_03283 0.60 +0.6
629,426 - MPMX19_03283 0.60 -1.0
629,426 - MPMX19_03283 0.60 -0.3
629,426 - MPMX19_03283 0.60 -0.4
629,514 + MPMX19_03283 0.66 -0.2
629,514 + MPMX19_03283 0.66 -0.1
629,514 + MPMX19_03283 0.66 -0.7
629,515 - MPMX19_03283 0.66 -1.3
629,515 - MPMX19_03283 0.66 -1.9
629,533 - MPMX19_03283 0.68 +0.4
629,598 + MPMX19_03283 0.73 -0.8
629,598 + MPMX19_03283 0.73 -1.1
629,598 + MPMX19_03283 0.73 +0.5
629,598 + MPMX19_03283 0.73 -0.6
629,598 + MPMX19_03283 0.73 -1.1
629,598 + MPMX19_03283 0.73 -1.3
629,598 + MPMX19_03283 0.73 -0.6
629,598 + MPMX19_03283 0.73 -0.5
629,599 - MPMX19_03283 0.73 +0.5
629,599 - MPMX19_03283 0.73 +0.7
629,599 - MPMX19_03283 0.73 -1.7
629,599 - MPMX19_03283 0.73 -1.9
629,599 - MPMX19_03283 0.73 -0.3
629,599 - MPMX19_03283 0.73 -0.5
629,599 - MPMX19_03283 0.73 +0.1
629,599 - MPMX19_03283 0.73 +0.5
629,599 - MPMX19_03283 0.73 +0.7
629,599 - MPMX19_03283 0.73 -1.4
629,599 - MPMX19_03283 0.73 -0.2
629,599 - MPMX19_03283 0.73 -1.9
629,599 - MPMX19_03283 0.73 -1.1
629,599 - MPMX19_03283 0.73 +0.5
629,599 - MPMX19_03283 0.73 -0.6
629,599 - MPMX19_03283 0.73 +0.1
629,599 - MPMX19_03283 0.73 -0.7
629,599 - MPMX19_03283 0.73 -1.3
629,599 - MPMX19_03283 0.73 -1.7
629,599 - MPMX19_03283 0.73 +1.6
629,599 - MPMX19_03283 0.73 -1.3
629,599 - MPMX19_03283 0.73 +1.8
629,599 - MPMX19_03283 0.73 -1.6
629,796 + MPMX19_03283 0.88 +1.1
629,796 + MPMX19_03283 0.88 -0.4
629,796 + MPMX19_03283 0.88 -1.6
629,797 - MPMX19_03283 0.88 +0.3
629,803 + MPMX19_03283 0.88 -0.1
629,803 + MPMX19_03283 0.88 -0.5
629,803 + MPMX19_03283 0.88 +1.3
629,803 + MPMX19_03283 0.88 +0.2
629,804 - MPMX19_03283 0.88 -2.0
629,804 - MPMX19_03283 0.88 -0.7
629,804 - MPMX19_03283 0.88 +0.5
629,804 - MPMX19_03283 0.88 -1.5
629,804 - MPMX19_03283 0.88 -0.8
629,804 - MPMX19_03283 0.88 +0.5
629,804 - MPMX19_03283 0.88 -0.4
629,804 - MPMX19_03283 0.88 +0.2
629,827 - -1.1
629,827 - -0.3
629,827 - -0.6
629,832 + -0.2
629,833 - -1.7
629,833 - -0.5
629,859 + +2.1
629,859 + -1.2
629,859 + -0.8
629,859 + +0.2
629,859 + -1.5
629,859 + -1.3
629,859 + -0.5
629,859 + -2.3
629,860 - +1.1
629,860 - +1.2
629,860 - -2.9
629,860 - -1.2
629,860 - -0.4
629,860 - -0.0
629,860 - +0.0
629,860 - -1.1
629,860 - -0.4
630,068 + -1.1
630,078 - +0.1
630,107 + -1.1
630,107 + -0.8
630,107 + +0.2
630,438 - MPMX19_03284 0.41 +1.5
630,473 + MPMX19_03284 0.44 -0.1
630,474 - MPMX19_03284 0.44 -0.3
630,474 - MPMX19_03284 0.44 +0.4
630,474 - MPMX19_03284 0.44 -0.6
630,474 - MPMX19_03284 0.44 -0.0
630,474 - MPMX19_03284 0.44 -0.9
630,474 - MPMX19_03284 0.44 +0.2
630,474 - MPMX19_03284 0.44 -2.3
630,608 + MPMX19_03284 0.57 -1.3
630,608 + MPMX19_03284 0.57 -0.2
630,609 - MPMX19_03284 0.57 -1.4
630,609 - MPMX19_03284 0.57 -1.6
630,609 - MPMX19_03284 0.57 -1.9
630,609 - MPMX19_03284 0.57 -0.9
630,609 - MPMX19_03284 0.57 -0.3
630,609 - MPMX19_03284 0.57 +0.5
630,665 + MPMX19_03284 0.63 +0.5
630,666 - MPMX19_03284 0.63 -1.8
630,851 + MPMX19_03284 0.81 +0.1
630,852 - MPMX19_03284 0.81 -0.2
630,852 - MPMX19_03284 0.81 -0.4
630,852 - MPMX19_03284 0.81 +0.2
630,923 + MPMX19_03284 0.88 -0.5
630,923 + MPMX19_03284 0.88 -0.9
630,923 + MPMX19_03284 0.88 +0.1
630,923 + MPMX19_03284 0.88 -0.0
630,923 + MPMX19_03284 0.88 -2.2
630,923 + MPMX19_03284 0.88 -0.1
630,924 - MPMX19_03284 0.88 -0.5
630,924 - MPMX19_03284 0.88 -0.4
630,924 - MPMX19_03284 0.88 -0.9
630,924 - MPMX19_03284 0.88 -0.1
631,148 - MPMX19_03285 0.11 -1.1
631,180 + MPMX19_03285 0.14 -0.4
631,180 + MPMX19_03285 0.14 +1.6
631,181 - MPMX19_03285 0.14 -0.9
631,181 - MPMX19_03285 0.14 -0.0
631,384 + MPMX19_03285 0.35 -0.2
631,384 + MPMX19_03285 0.35 -0.8
631,495 + MPMX19_03285 0.47 -1.5
631,495 + MPMX19_03285 0.47 +0.5
631,495 + MPMX19_03285 0.47 -1.5
631,495 + MPMX19_03285 0.47 -0.1
631,495 + MPMX19_03285 0.47 -2.0
631,495 + MPMX19_03285 0.47 -1.6
631,495 + MPMX19_03285 0.47 -1.4
631,495 + MPMX19_03285 0.47 -1.1
631,495 + MPMX19_03285 0.47 +0.5
631,495 + MPMX19_03285 0.47 +0.2
631,495 + MPMX19_03285 0.47 +1.3
631,496 - MPMX19_03285 0.47 -0.3
631,496 - MPMX19_03285 0.47 +1.3
631,496 - MPMX19_03285 0.47 +0.3
631,496 - MPMX19_03285 0.47 +1.6
631,496 - MPMX19_03285 0.47 -0.9
631,496 - MPMX19_03285 0.47 +0.1
631,496 - MPMX19_03285 0.47 -0.3
631,496 - MPMX19_03285 0.47 +0.5
631,496 - MPMX19_03285 0.47 -1.5
631,496 - MPMX19_03285 0.47 -0.7
631,645 + MPMX19_03285 0.62 -0.0
631,645 + MPMX19_03285 0.62 +0.5
631,645 + MPMX19_03285 0.62 -1.1
631,646 - MPMX19_03285 0.62 -1.5
631,646 - MPMX19_03285 0.62 -1.6
631,697 - MPMX19_03285 0.67 +0.1
631,697 - MPMX19_03285 0.67 -0.9
631,786 + MPMX19_03285 0.77 -1.1
631,786 + MPMX19_03285 0.77 -0.5
631,786 + MPMX19_03285 0.77 -0.9
631,786 + MPMX19_03285 0.77 -0.7
631,786 + MPMX19_03285 0.77 +0.9
631,786 + MPMX19_03285 0.77 +0.9
631,786 + MPMX19_03285 0.77 +0.5
631,787 - MPMX19_03285 0.77 -0.3
631,787 - MPMX19_03285 0.77 -1.8
631,789 + MPMX19_03285 0.77 +0.7
631,789 + MPMX19_03285 0.77 +1.3
631,789 + MPMX19_03285 0.77 -0.4
631,789 + MPMX19_03285 0.77 -0.1
631,789 + MPMX19_03285 0.77 -0.7
631,789 + MPMX19_03285 0.77 +0.1
631,789 + MPMX19_03285 0.77 +0.2
631,789 + MPMX19_03285 0.77 +1.7
631,790 - MPMX19_03285 0.77 -1.8
631,831 + MPMX19_03285 0.81 -1.3
631,831 + MPMX19_03285 0.81 +0.5
631,831 + MPMX19_03285 0.81 +0.4
631,831 + MPMX19_03285 0.81 +1.0
631,832 - MPMX19_03285 0.81 -0.2

Or see this region's nucleotide sequence