Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03269 and MPMX19_03270 are separated by 63 nucleotides MPMX19_03270 and MPMX19_03271 overlap by 4 nucleotides
MPMX19_03269: MPMX19_03269 - hypothetical protein, at 612,914 to 614,197
_03269
MPMX19_03270: MPMX19_03270 - Lactose transport system permease protein LacF, at 614,261 to 615,292
_03270
MPMX19_03271: MPMX19_03271 - hypothetical protein, at 615,289 to 616,344
_03271
Position (kb) 614
615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 613.310 kb on + strand, within MPMX19_03269 at 613.310 kb on + strand, within MPMX19_03269 at 613.310 kb on + strand, within MPMX19_03269 at 613.310 kb on + strand, within MPMX19_03269 at 613.311 kb on - strand, within MPMX19_03269 at 613.311 kb on - strand, within MPMX19_03269 at 613.349 kb on + strand, within MPMX19_03269 at 613.694 kb on + strand, within MPMX19_03269 at 613.694 kb on + strand, within MPMX19_03269 at 613.694 kb on + strand, within MPMX19_03269 at 613.694 kb on + strand, within MPMX19_03269 at 613.695 kb on - strand, within MPMX19_03269 at 613.871 kb on + strand, within MPMX19_03269 at 613.871 kb on + strand, within MPMX19_03269 at 613.872 kb on - strand, within MPMX19_03269 at 613.872 kb on - strand, within MPMX19_03269 at 613.904 kb on + strand, within MPMX19_03269 at 613.904 kb on + strand, within MPMX19_03269 at 613.904 kb on + strand, within MPMX19_03269 at 613.904 kb on + strand, within MPMX19_03269 at 613.904 kb on + strand, within MPMX19_03269 at 613.904 kb on + strand, within MPMX19_03269 at 613.905 kb on - strand, within MPMX19_03269 at 613.905 kb on - strand, within MPMX19_03269 at 613.905 kb on - strand, within MPMX19_03269 at 613.905 kb on - strand, within MPMX19_03269 at 613.905 kb on - strand, within MPMX19_03269 at 613.905 kb on - strand, within MPMX19_03269 at 613.905 kb on - strand, within MPMX19_03269 at 613.961 kb on + strand, within MPMX19_03269 at 613.961 kb on + strand, within MPMX19_03269 at 613.962 kb on - strand, within MPMX19_03269 at 613.962 kb on - strand, within MPMX19_03269 at 613.962 kb on - strand, within MPMX19_03269 at 613.962 kb on - strand, within MPMX19_03269 at 613.962 kb on - strand, within MPMX19_03269 at 613.962 kb on - strand, within MPMX19_03269 at 614.039 kb on + strand, within MPMX19_03269 at 614.138 kb on + strand at 614.138 kb on + strand at 614.139 kb on - strand at 614.139 kb on - strand at 614.139 kb on - strand at 614.269 kb on + strand at 614.269 kb on + strand at 614.270 kb on - strand at 614.414 kb on + strand, within MPMX19_03270 at 614.414 kb on + strand, within MPMX19_03270 at 614.414 kb on + strand, within MPMX19_03270 at 614.414 kb on + strand, within MPMX19_03270 at 614.415 kb on - strand, within MPMX19_03270 at 614.415 kb on - strand, within MPMX19_03270 at 614.415 kb on - strand, within MPMX19_03270 at 614.415 kb on - strand, within MPMX19_03270 at 614.531 kb on + strand, within MPMX19_03270 at 614.531 kb on + strand, within MPMX19_03270 at 614.531 kb on + strand, within MPMX19_03270 at 614.532 kb on - strand, within MPMX19_03270 at 614.532 kb on - strand, within MPMX19_03270 at 614.532 kb on - strand, within MPMX19_03270 at 614.532 kb on - strand, within MPMX19_03270 at 614.532 kb on - strand, within MPMX19_03270 at 614.549 kb on + strand, within MPMX19_03270 at 614.549 kb on + strand, within MPMX19_03270 at 614.550 kb on - strand, within MPMX19_03270 at 614.550 kb on - strand, within MPMX19_03270 at 614.576 kb on + strand, within MPMX19_03270 at 614.576 kb on + strand, within MPMX19_03270 at 614.576 kb on + strand, within MPMX19_03270 at 614.576 kb on + strand, within MPMX19_03270 at 614.576 kb on + strand, within MPMX19_03270 at 614.577 kb on - strand, within MPMX19_03270 at 614.577 kb on - strand, within MPMX19_03270 at 614.577 kb on - strand, within MPMX19_03270 at 614.577 kb on - strand, within MPMX19_03270 at 614.738 kb on + strand, within MPMX19_03270 at 614.738 kb on + strand, within MPMX19_03270 at 614.739 kb on - strand, within MPMX19_03270 at 614.739 kb on - strand, within MPMX19_03270 at 614.739 kb on - strand, within MPMX19_03270 at 614.739 kb on - strand, within MPMX19_03270 at 614.924 kb on + strand, within MPMX19_03270 at 614.924 kb on + strand, within MPMX19_03270 at 614.924 kb on + strand, within MPMX19_03270 at 614.924 kb on + strand, within MPMX19_03270 at 614.924 kb on + strand, within MPMX19_03270 at 614.925 kb on - strand, within MPMX19_03270 at 614.925 kb on - strand, within MPMX19_03270 at 614.925 kb on - strand, within MPMX19_03270 at 614.972 kb on + strand, within MPMX19_03270 at 614.972 kb on + strand, within MPMX19_03270 at 614.973 kb on - strand, within MPMX19_03270 at 614.973 kb on - strand, within MPMX19_03270 at 614.973 kb on - strand, within MPMX19_03270 at 614.973 kb on - strand, within MPMX19_03270 at 614.973 kb on - strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.158 kb on + strand, within MPMX19_03270 at 615.159 kb on - strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.164 kb on + strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.165 kb on - strand, within MPMX19_03270 at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.364 kb on + strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.365 kb on - strand at 615.370 kb on + strand at 615.370 kb on + strand at 615.370 kb on + strand at 615.371 kb on - strand at 615.371 kb on - strand at 615.371 kb on - strand at 615.691 kb on + strand, within MPMX19_03271 at 615.691 kb on + strand, within MPMX19_03271 at 615.691 kb on + strand, within MPMX19_03271 at 615.691 kb on + strand, within MPMX19_03271 at 615.691 kb on + strand, within MPMX19_03271 at 615.691 kb on + strand, within MPMX19_03271 at 615.692 kb on - strand, within MPMX19_03271 at 615.692 kb on - strand, within MPMX19_03271 at 615.800 kb on - strand, within MPMX19_03271 at 615.800 kb on - strand, within MPMX19_03271 at 615.800 kb on - strand, within MPMX19_03271 at 615.800 kb on - strand, within MPMX19_03271 at 615.800 kb on - strand, within MPMX19_03271 at 615.815 kb on - strand, within MPMX19_03271 at 615.898 kb on + strand, within MPMX19_03271 at 615.899 kb on - strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.994 kb on + strand, within MPMX19_03271 at 615.995 kb on - strand, within MPMX19_03271 at 615.995 kb on - strand, within MPMX19_03271 at 615.995 kb on - strand, within MPMX19_03271 at 616.063 kb on + strand, within MPMX19_03271 at 616.063 kb on + strand, within MPMX19_03271 at 616.063 kb on + strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.064 kb on - strand, within MPMX19_03271 at 616.240 kb on + strand at 616.240 kb on + strand at 616.240 kb on + strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand at 616.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 613,310 + MPMX19_03269 0.31 -1.3 613,310 + MPMX19_03269 0.31 +0.6 613,310 + MPMX19_03269 0.31 -0.5 613,310 + MPMX19_03269 0.31 +0.2 613,311 - MPMX19_03269 0.31 -1.0 613,311 - MPMX19_03269 0.31 -1.9 613,349 + MPMX19_03269 0.34 -0.3 613,694 + MPMX19_03269 0.61 -1.1 613,694 + MPMX19_03269 0.61 +1.1 613,694 + MPMX19_03269 0.61 +0.7 613,694 + MPMX19_03269 0.61 -1.1 613,695 - MPMX19_03269 0.61 -0.1 613,871 + MPMX19_03269 0.75 -2.1 613,871 + MPMX19_03269 0.75 -0.1 613,872 - MPMX19_03269 0.75 -0.6 613,872 - MPMX19_03269 0.75 +0.0 613,904 + MPMX19_03269 0.77 +0.8 613,904 + MPMX19_03269 0.77 +1.3 613,904 + MPMX19_03269 0.77 -0.5 613,904 + MPMX19_03269 0.77 +0.7 613,904 + MPMX19_03269 0.77 -0.4 613,904 + MPMX19_03269 0.77 -1.5 613,905 - MPMX19_03269 0.77 -0.4 613,905 - MPMX19_03269 0.77 -0.7 613,905 - MPMX19_03269 0.77 -1.1 613,905 - MPMX19_03269 0.77 -1.1 613,905 - MPMX19_03269 0.77 -0.9 613,905 - MPMX19_03269 0.77 +0.9 613,905 - MPMX19_03269 0.77 -0.5 613,961 + MPMX19_03269 0.82 -0.6 613,961 + MPMX19_03269 0.82 +0.2 613,962 - MPMX19_03269 0.82 +1.3 613,962 - MPMX19_03269 0.82 -1.6 613,962 - MPMX19_03269 0.82 -0.9 613,962 - MPMX19_03269 0.82 -1.6 613,962 - MPMX19_03269 0.82 -0.4 613,962 - MPMX19_03269 0.82 +0.3 614,039 + MPMX19_03269 0.88 -0.3 614,138 + +0.6 614,138 + -0.3 614,139 - -0.4 614,139 - +0.3 614,139 - -1.4 614,269 + +0.1 614,269 + -0.5 614,270 - -0.6 614,414 + MPMX19_03270 0.15 -1.1 614,414 + MPMX19_03270 0.15 -1.0 614,414 + MPMX19_03270 0.15 +0.9 614,414 + MPMX19_03270 0.15 +0.1 614,415 - MPMX19_03270 0.15 +0.4 614,415 - MPMX19_03270 0.15 -0.9 614,415 - MPMX19_03270 0.15 -0.6 614,415 - MPMX19_03270 0.15 -0.2 614,531 + MPMX19_03270 0.26 -0.1 614,531 + MPMX19_03270 0.26 -0.3 614,531 + MPMX19_03270 0.26 -1.4 614,532 - MPMX19_03270 0.26 -0.1 614,532 - MPMX19_03270 0.26 -0.5 614,532 - MPMX19_03270 0.26 -1.8 614,532 - MPMX19_03270 0.26 -0.3 614,532 - MPMX19_03270 0.26 +0.1 614,549 + MPMX19_03270 0.28 -2.2 614,549 + MPMX19_03270 0.28 +1.2 614,550 - MPMX19_03270 0.28 +0.3 614,550 - MPMX19_03270 0.28 -0.6 614,576 + MPMX19_03270 0.31 -0.5 614,576 + MPMX19_03270 0.31 -0.7 614,576 + MPMX19_03270 0.31 -0.3 614,576 + MPMX19_03270 0.31 +0.9 614,576 + MPMX19_03270 0.31 -1.5 614,577 - MPMX19_03270 0.31 -0.9 614,577 - MPMX19_03270 0.31 -1.8 614,577 - MPMX19_03270 0.31 -1.5 614,577 - MPMX19_03270 0.31 -0.5 614,738 + MPMX19_03270 0.46 -0.3 614,738 + MPMX19_03270 0.46 -0.8 614,739 - MPMX19_03270 0.46 -0.3 614,739 - MPMX19_03270 0.46 -0.5 614,739 - MPMX19_03270 0.46 -0.3 614,739 - MPMX19_03270 0.46 -0.4 614,924 + MPMX19_03270 0.64 +0.3 614,924 + MPMX19_03270 0.64 -0.1 614,924 + MPMX19_03270 0.64 -0.8 614,924 + MPMX19_03270 0.64 +0.3 614,924 + MPMX19_03270 0.64 +0.7 614,925 - MPMX19_03270 0.64 -0.7 614,925 - MPMX19_03270 0.64 -0.2 614,925 - MPMX19_03270 0.64 +0.5 614,972 + MPMX19_03270 0.69 -0.9 614,972 + MPMX19_03270 0.69 +0.2 614,973 - MPMX19_03270 0.69 -0.3 614,973 - MPMX19_03270 0.69 -0.7 614,973 - MPMX19_03270 0.69 -0.2 614,973 - MPMX19_03270 0.69 +1.1 614,973 - MPMX19_03270 0.69 -0.5 615,158 + MPMX19_03270 0.87 -1.2 615,158 + MPMX19_03270 0.87 +0.1 615,158 + MPMX19_03270 0.87 +0.4 615,158 + MPMX19_03270 0.87 -2.6 615,158 + MPMX19_03270 0.87 +1.1 615,158 + MPMX19_03270 0.87 -1.0 615,158 + MPMX19_03270 0.87 +1.5 615,158 + MPMX19_03270 0.87 -0.7 615,158 + MPMX19_03270 0.87 -0.1 615,159 - MPMX19_03270 0.87 -2.0 615,164 + MPMX19_03270 0.88 -0.9 615,164 + MPMX19_03270 0.88 -1.9 615,164 + MPMX19_03270 0.88 -1.1 615,164 + MPMX19_03270 0.88 +0.3 615,164 + MPMX19_03270 0.88 +1.3 615,164 + MPMX19_03270 0.88 -0.6 615,164 + MPMX19_03270 0.88 -0.4 615,164 + MPMX19_03270 0.88 -0.0 615,164 + MPMX19_03270 0.88 -0.7 615,164 + MPMX19_03270 0.88 -2.1 615,164 + MPMX19_03270 0.88 +0.4 615,164 + MPMX19_03270 0.88 -0.9 615,164 + MPMX19_03270 0.88 -1.2 615,164 + MPMX19_03270 0.88 -1.5 615,164 + MPMX19_03270 0.88 -0.2 615,165 - MPMX19_03270 0.88 +0.5 615,165 - MPMX19_03270 0.88 -1.1 615,165 - MPMX19_03270 0.88 +1.1 615,165 - MPMX19_03270 0.88 -0.7 615,165 - MPMX19_03270 0.88 +0.6 615,165 - MPMX19_03270 0.88 +0.1 615,165 - MPMX19_03270 0.88 +1.1 615,165 - MPMX19_03270 0.88 +0.1 615,364 + -3.2 615,364 + -0.7 615,364 + -1.5 615,364 + -1.6 615,364 + +0.1 615,364 + -1.1 615,364 + -0.9 615,364 + -0.7 615,364 + -0.1 615,364 + +0.2 615,364 + -0.9 615,364 + -0.3 615,364 + -0.3 615,364 + -1.5 615,365 - -1.4 615,365 - -0.4 615,365 - -0.3 615,365 - +0.8 615,365 - -0.7 615,365 - -0.6 615,365 - -0.6 615,365 - +1.1 615,365 - +0.3 615,365 - +0.3 615,365 - +0.5 615,365 - +0.5 615,365 - +0.5 615,365 - -1.5 615,365 - -0.7 615,365 - +0.3 615,365 - -0.7 615,365 - +0.6 615,365 - +0.8 615,370 + -0.0 615,370 + -0.4 615,370 + -0.4 615,371 - -0.9 615,371 - +0.5 615,371 - -1.4 615,691 + MPMX19_03271 0.38 -0.2 615,691 + MPMX19_03271 0.38 -1.3 615,691 + MPMX19_03271 0.38 -0.3 615,691 + MPMX19_03271 0.38 -0.4 615,691 + MPMX19_03271 0.38 -0.9 615,691 + MPMX19_03271 0.38 -0.3 615,692 - MPMX19_03271 0.38 +0.5 615,692 - MPMX19_03271 0.38 -1.7 615,800 - MPMX19_03271 0.48 -1.2 615,800 - MPMX19_03271 0.48 -0.7 615,800 - MPMX19_03271 0.48 -0.7 615,800 - MPMX19_03271 0.48 +0.6 615,800 - MPMX19_03271 0.48 -1.6 615,815 - MPMX19_03271 0.50 -1.5 615,898 + MPMX19_03271 0.58 -0.1 615,899 - MPMX19_03271 0.58 -2.3 615,994 + MPMX19_03271 0.67 +0.6 615,994 + MPMX19_03271 0.67 +0.3 615,994 + MPMX19_03271 0.67 +1.6 615,994 + MPMX19_03271 0.67 -0.0 615,994 + MPMX19_03271 0.67 +1.1 615,994 + MPMX19_03271 0.67 +0.8 615,995 - MPMX19_03271 0.67 +0.1 615,995 - MPMX19_03271 0.67 -1.3 615,995 - MPMX19_03271 0.67 -0.4 616,063 + MPMX19_03271 0.73 -0.4 616,063 + MPMX19_03271 0.73 -2.0 616,063 + MPMX19_03271 0.73 +0.5 616,064 - MPMX19_03271 0.73 +0.1 616,064 - MPMX19_03271 0.73 -0.5 616,064 - MPMX19_03271 0.73 -0.2 616,064 - MPMX19_03271 0.73 -0.3 616,064 - MPMX19_03271 0.73 -0.4 616,064 - MPMX19_03271 0.73 +0.6 616,240 + -1.3 616,240 + +0.2 616,240 + -0.5 616,241 - -0.9 616,241 - -0.7 616,241 - -0.7 616,241 - +0.3 616,241 - -0.6 616,241 - -0.8 616,241 - -0.6 616,241 - +0.2
Or see this region's nucleotide sequence