Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03256

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03255 and MPMX19_03256 are separated by 88 nucleotidesMPMX19_03256 and MPMX19_03257 are separated by 108 nucleotides MPMX19_03255: MPMX19_03255 - tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC, at 595,943 to 597,304 _03255 MPMX19_03256: MPMX19_03256 - hypothetical protein, at 597,393 to 598,244 _03256 MPMX19_03257: MPMX19_03257 - Glycine betaine/proline betaine transport system ATP-binding protein ProV, at 598,353 to 599,438 _03257 Position (kb) 597 598 599Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 596.495 kb on + strand, within MPMX19_03255at 596.495 kb on + strand, within MPMX19_03255at 596.495 kb on + strand, within MPMX19_03255at 596.496 kb on - strand, within MPMX19_03255at 596.498 kb on + strand, within MPMX19_03255at 596.498 kb on + strand, within MPMX19_03255at 596.499 kb on - strand, within MPMX19_03255at 596.499 kb on - strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.513 kb on + strand, within MPMX19_03255at 596.514 kb on - strand, within MPMX19_03255at 596.514 kb on - strand, within MPMX19_03255at 596.515 kb on + strand, within MPMX19_03255at 596.515 kb on + strand, within MPMX19_03255at 596.515 kb on + strand, within MPMX19_03255at 596.515 kb on + strand, within MPMX19_03255at 596.515 kb on + strand, within MPMX19_03255at 596.549 kb on + strand, within MPMX19_03255at 596.549 kb on + strand, within MPMX19_03255at 596.549 kb on + strand, within MPMX19_03255at 596.549 kb on + strand, within MPMX19_03255at 596.549 kb on + strand, within MPMX19_03255at 596.549 kb on + strand, within MPMX19_03255at 596.549 kb on + strand, within MPMX19_03255at 596.549 kb on + strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.550 kb on - strand, within MPMX19_03255at 596.551 kb on + strand, within MPMX19_03255at 596.594 kb on + strand, within MPMX19_03255at 596.594 kb on + strand, within MPMX19_03255at 596.595 kb on - strand, within MPMX19_03255at 596.595 kb on - strand, within MPMX19_03255at 596.595 kb on - strand, within MPMX19_03255at 596.595 kb on - strand, within MPMX19_03255at 596.595 kb on - strand, within MPMX19_03255at 596.595 kb on - strand, within MPMX19_03255at 596.704 kb on + strand, within MPMX19_03255at 596.704 kb on + strand, within MPMX19_03255at 596.704 kb on + strand, within MPMX19_03255at 596.704 kb on + strand, within MPMX19_03255at 596.705 kb on - strand, within MPMX19_03255at 596.705 kb on - strand, within MPMX19_03255at 596.705 kb on - strand, within MPMX19_03255at 596.705 kb on - strand, within MPMX19_03255at 596.705 kb on - strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.753 kb on + strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.754 kb on - strand, within MPMX19_03255at 596.789 kb on + strand, within MPMX19_03255at 596.790 kb on - strand, within MPMX19_03255at 596.912 kb on + strand, within MPMX19_03255at 596.912 kb on + strand, within MPMX19_03255at 596.912 kb on + strand, within MPMX19_03255at 596.912 kb on + strand, within MPMX19_03255at 596.913 kb on - strand, within MPMX19_03255at 597.020 kb on + strand, within MPMX19_03255at 597.020 kb on + strand, within MPMX19_03255at 597.020 kb on + strand, within MPMX19_03255at 597.021 kb on - strand, within MPMX19_03255at 597.021 kb on - strand, within MPMX19_03255at 597.092 kb on + strand, within MPMX19_03255at 597.092 kb on + strand, within MPMX19_03255at 597.093 kb on - strand, within MPMX19_03255at 597.093 kb on - strand, within MPMX19_03255at 597.197 kb on + strandat 597.226 kb on - strandat 597.303 kb on - strandat 597.595 kb on - strand, within MPMX19_03256at 597.595 kb on - strand, within MPMX19_03256at 597.595 kb on - strand, within MPMX19_03256at 597.645 kb on + strand, within MPMX19_03256at 597.645 kb on + strand, within MPMX19_03256at 597.645 kb on + strand, within MPMX19_03256at 597.645 kb on + strand, within MPMX19_03256at 597.646 kb on - strand, within MPMX19_03256at 597.717 kb on + strand, within MPMX19_03256at 597.717 kb on + strand, within MPMX19_03256at 597.718 kb on - strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.742 kb on - strand, within MPMX19_03256at 597.742 kb on - strand, within MPMX19_03256at 597.742 kb on - strand, within MPMX19_03256at 597.861 kb on + strand, within MPMX19_03256at 597.861 kb on + strand, within MPMX19_03256at 597.862 kb on - strand, within MPMX19_03256at 597.862 kb on - strand, within MPMX19_03256at 597.999 kb on + strand, within MPMX19_03256at 597.999 kb on + strand, within MPMX19_03256at 597.999 kb on + strand, within MPMX19_03256at 597.999 kb on + strand, within MPMX19_03256at 598.000 kb on - strand, within MPMX19_03256at 598.000 kb on - strand, within MPMX19_03256at 598.000 kb on - strand, within MPMX19_03256at 598.041 kb on + strand, within MPMX19_03256at 598.041 kb on + strand, within MPMX19_03256at 598.041 kb on + strand, within MPMX19_03256at 598.041 kb on + strand, within MPMX19_03256at 598.042 kb on - strand, within MPMX19_03256at 598.042 kb on - strand, within MPMX19_03256at 598.042 kb on - strand, within MPMX19_03256at 598.042 kb on - strand, within MPMX19_03256at 598.042 kb on - strand, within MPMX19_03256at 598.042 kb on - strand, within MPMX19_03256at 598.044 kb on + strand, within MPMX19_03256at 598.044 kb on + strand, within MPMX19_03256at 598.044 kb on + strand, within MPMX19_03256at 598.045 kb on - strand, within MPMX19_03256at 598.045 kb on - strand, within MPMX19_03256at 598.110 kb on + strand, within MPMX19_03256at 598.110 kb on + strand, within MPMX19_03256at 598.110 kb on + strand, within MPMX19_03256at 598.110 kb on + strand, within MPMX19_03256at 598.110 kb on + strand, within MPMX19_03256at 598.110 kb on + strand, within MPMX19_03256at 598.110 kb on + strand, within MPMX19_03256at 598.111 kb on - strand, within MPMX19_03256at 598.111 kb on - strand, within MPMX19_03256at 598.239 kb on + strandat 598.239 kb on + strandat 598.239 kb on + strandat 598.240 kb on - strandat 598.302 kb on + strandat 598.302 kb on + strandat 598.302 kb on + strandat 598.302 kb on + strandat 598.303 kb on - strandat 598.303 kb on - strandat 598.344 kb on + strandat 599.151 kb on + strand, within MPMX19_03257at 599.151 kb on + strand, within MPMX19_03257at 599.151 kb on + strand, within MPMX19_03257at 599.151 kb on + strand, within MPMX19_03257at 599.152 kb on - strand, within MPMX19_03257at 599.152 kb on - strand, within MPMX19_03257

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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596,495 + MPMX19_03255 0.41 -0.4
596,495 + MPMX19_03255 0.41 -0.1
596,495 + MPMX19_03255 0.41 -0.7
596,496 - MPMX19_03255 0.41 -0.9
596,498 + MPMX19_03255 0.41 -1.6
596,498 + MPMX19_03255 0.41 +0.3
596,499 - MPMX19_03255 0.41 -1.1
596,499 - MPMX19_03255 0.41 +0.5
596,513 + MPMX19_03255 0.42 -0.5
596,513 + MPMX19_03255 0.42 -1.5
596,513 + MPMX19_03255 0.42 -0.8
596,513 + MPMX19_03255 0.42 -2.5
596,513 + MPMX19_03255 0.42 -1.2
596,513 + MPMX19_03255 0.42 +1.1
596,513 + MPMX19_03255 0.42 -1.1
596,513 + MPMX19_03255 0.42 -0.9
596,513 + MPMX19_03255 0.42 -0.9
596,513 + MPMX19_03255 0.42 -0.8
596,514 - MPMX19_03255 0.42 +0.1
596,514 - MPMX19_03255 0.42 +0.1
596,515 + MPMX19_03255 0.42 +0.9
596,515 + MPMX19_03255 0.42 -0.9
596,515 + MPMX19_03255 0.42 -0.7
596,515 + MPMX19_03255 0.42 -2.5
596,515 + MPMX19_03255 0.42 -1.7
596,549 + MPMX19_03255 0.44 -0.2
596,549 + MPMX19_03255 0.44 +1.3
596,549 + MPMX19_03255 0.44 -0.9
596,549 + MPMX19_03255 0.44 -1.3
596,549 + MPMX19_03255 0.44 +0.5
596,549 + MPMX19_03255 0.44 -0.1
596,549 + MPMX19_03255 0.44 -1.4
596,549 + MPMX19_03255 0.44 -0.3
596,550 - MPMX19_03255 0.45 -1.3
596,550 - MPMX19_03255 0.45 -0.6
596,550 - MPMX19_03255 0.45 -0.9
596,550 - MPMX19_03255 0.45 +0.3
596,550 - MPMX19_03255 0.45 -1.7
596,550 - MPMX19_03255 0.45 -0.5
596,550 - MPMX19_03255 0.45 -1.3
596,550 - MPMX19_03255 0.45 -0.5
596,550 - MPMX19_03255 0.45 -0.6
596,550 - MPMX19_03255 0.45 -1.1
596,551 + MPMX19_03255 0.45 +0.5
596,594 + MPMX19_03255 0.48 -1.9
596,594 + MPMX19_03255 0.48 -0.4
596,595 - MPMX19_03255 0.48 +0.8
596,595 - MPMX19_03255 0.48 +1.7
596,595 - MPMX19_03255 0.48 +0.9
596,595 - MPMX19_03255 0.48 -0.6
596,595 - MPMX19_03255 0.48 -0.6
596,595 - MPMX19_03255 0.48 +0.6
596,704 + MPMX19_03255 0.56 -1.2
596,704 + MPMX19_03255 0.56 -0.9
596,704 + MPMX19_03255 0.56 +0.4
596,704 + MPMX19_03255 0.56 +0.6
596,705 - MPMX19_03255 0.56 -1.5
596,705 - MPMX19_03255 0.56 -1.1
596,705 - MPMX19_03255 0.56 +1.1
596,705 - MPMX19_03255 0.56 -0.9
596,705 - MPMX19_03255 0.56 -0.7
596,753 + MPMX19_03255 0.59 +0.1
596,753 + MPMX19_03255 0.59 +0.1
596,753 + MPMX19_03255 0.59 -0.1
596,753 + MPMX19_03255 0.59 -0.6
596,753 + MPMX19_03255 0.59 +0.5
596,753 + MPMX19_03255 0.59 -1.4
596,753 + MPMX19_03255 0.59 -0.9
596,753 + MPMX19_03255 0.59 -0.0
596,753 + MPMX19_03255 0.59 -0.5
596,753 + MPMX19_03255 0.59 +0.3
596,754 - MPMX19_03255 0.60 -0.0
596,754 - MPMX19_03255 0.60 -1.4
596,754 - MPMX19_03255 0.60 +0.3
596,754 - MPMX19_03255 0.60 +0.7
596,754 - MPMX19_03255 0.60 -0.3
596,754 - MPMX19_03255 0.60 -0.2
596,754 - MPMX19_03255 0.60 -0.3
596,754 - MPMX19_03255 0.60 -0.5
596,754 - MPMX19_03255 0.60 +0.6
596,789 + MPMX19_03255 0.62 -1.4
596,790 - MPMX19_03255 0.62 -1.3
596,912 + MPMX19_03255 0.71 +1.3
596,912 + MPMX19_03255 0.71 -0.4
596,912 + MPMX19_03255 0.71 -0.2
596,912 + MPMX19_03255 0.71 -0.3
596,913 - MPMX19_03255 0.71 -0.3
597,020 + MPMX19_03255 0.79 -0.3
597,020 + MPMX19_03255 0.79 -0.1
597,020 + MPMX19_03255 0.79 -2.3
597,021 - MPMX19_03255 0.79 +0.1
597,021 - MPMX19_03255 0.79 +0.5
597,092 + MPMX19_03255 0.84 -1.6
597,092 + MPMX19_03255 0.84 +0.2
597,093 - MPMX19_03255 0.84 -1.0
597,093 - MPMX19_03255 0.84 +0.5
597,197 + +0.5
597,226 - -0.8
597,303 - -0.8
597,595 - MPMX19_03256 0.24 -0.9
597,595 - MPMX19_03256 0.24 +0.8
597,595 - MPMX19_03256 0.24 +0.1
597,645 + MPMX19_03256 0.30 -0.9
597,645 + MPMX19_03256 0.30 -0.5
597,645 + MPMX19_03256 0.30 -0.6
597,645 + MPMX19_03256 0.30 -0.3
597,646 - MPMX19_03256 0.30 -0.7
597,717 + MPMX19_03256 0.38 +1.3
597,717 + MPMX19_03256 0.38 -1.4
597,718 - MPMX19_03256 0.38 +2.6
597,741 + MPMX19_03256 0.41 -1.1
597,741 + MPMX19_03256 0.41 -0.6
597,741 + MPMX19_03256 0.41 -0.4
597,741 + MPMX19_03256 0.41 -0.2
597,741 + MPMX19_03256 0.41 -0.3
597,741 + MPMX19_03256 0.41 -1.5
597,741 + MPMX19_03256 0.41 -1.4
597,741 + MPMX19_03256 0.41 +0.5
597,741 + MPMX19_03256 0.41 -0.6
597,741 + MPMX19_03256 0.41 -1.0
597,742 - MPMX19_03256 0.41 -0.5
597,742 - MPMX19_03256 0.41 -0.1
597,742 - MPMX19_03256 0.41 +0.5
597,861 + MPMX19_03256 0.55 -0.8
597,861 + MPMX19_03256 0.55 +0.9
597,862 - MPMX19_03256 0.55 +0.1
597,862 - MPMX19_03256 0.55 -1.0
597,999 + MPMX19_03256 0.71 -0.4
597,999 + MPMX19_03256 0.71 +0.5
597,999 + MPMX19_03256 0.71 +0.3
597,999 + MPMX19_03256 0.71 -1.0
598,000 - MPMX19_03256 0.71 -1.0
598,000 - MPMX19_03256 0.71 -0.7
598,000 - MPMX19_03256 0.71 -1.3
598,041 + MPMX19_03256 0.76 +0.3
598,041 + MPMX19_03256 0.76 -0.1
598,041 + MPMX19_03256 0.76 -0.2
598,041 + MPMX19_03256 0.76 -0.9
598,042 - MPMX19_03256 0.76 -0.5
598,042 - MPMX19_03256 0.76 -0.7
598,042 - MPMX19_03256 0.76 -0.3
598,042 - MPMX19_03256 0.76 +0.7
598,042 - MPMX19_03256 0.76 +0.1
598,042 - MPMX19_03256 0.76 -0.5
598,044 + MPMX19_03256 0.76 -1.3
598,044 + MPMX19_03256 0.76 -0.4
598,044 + MPMX19_03256 0.76 -2.1
598,045 - MPMX19_03256 0.77 +0.0
598,045 - MPMX19_03256 0.77 -0.9
598,110 + MPMX19_03256 0.84 -1.7
598,110 + MPMX19_03256 0.84 -0.9
598,110 + MPMX19_03256 0.84 -0.8
598,110 + MPMX19_03256 0.84 -0.4
598,110 + MPMX19_03256 0.84 -1.9
598,110 + MPMX19_03256 0.84 -1.8
598,110 + MPMX19_03256 0.84 -0.3
598,111 - MPMX19_03256 0.84 +0.9
598,111 - MPMX19_03256 0.84 +0.1
598,239 + -0.5
598,239 + -0.7
598,239 + -1.7
598,240 - -1.6
598,302 + -0.9
598,302 + -0.2
598,302 + +0.8
598,302 + +0.9
598,303 - -2.4
598,303 - -3.5
598,344 + +1.3
599,151 + MPMX19_03257 0.73 -0.2
599,151 + MPMX19_03257 0.73 -1.0
599,151 + MPMX19_03257 0.73 -1.0
599,151 + MPMX19_03257 0.73 -1.4
599,152 - MPMX19_03257 0.74 -0.8
599,152 - MPMX19_03257 0.74 +1.5

Or see this region's nucleotide sequence