Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03241 and MPMX19_03242 are separated by 82 nucleotides MPMX19_03242 and MPMX19_03243 are separated by 368 nucleotides
MPMX19_03241: MPMX19_03241 - Linear gramicidin synthase subunit D, at 554,693 to 562,729
_03241
MPMX19_03242: MPMX19_03242 - ABC transporter ATP-binding/permease protein YojI, at 562,812 to 564,467
_03242
MPMX19_03243: MPMX19_03243 - hypothetical protein, at 564,836 to 565,849
_03243
Position (kb) 562
563
564
565 Strain fitness (log2 ratio) -2
-1
0
1
2 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.887 kb on + strand, within MPMX19_03241 at 561.888 kb on - strand, within MPMX19_03241 at 561.888 kb on - strand, within MPMX19_03241 at 561.888 kb on - strand, within MPMX19_03241 at 561.888 kb on - strand, within MPMX19_03241 at 561.888 kb on - strand, within MPMX19_03241 at 561.888 kb on - strand, within MPMX19_03241 at 561.888 kb on - strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.891 kb on + strand, within MPMX19_03241 at 561.892 kb on - strand, within MPMX19_03241 at 561.892 kb on - strand, within MPMX19_03241 at 561.892 kb on - strand, within MPMX19_03241 at 561.892 kb on - strand, within MPMX19_03241 at 561.892 kb on - strand, within MPMX19_03241 at 561.972 kb on - strand at 561.972 kb on - strand at 562.043 kb on + strand at 562.091 kb on + strand at 562.092 kb on - strand at 562.238 kb on + strand at 562.238 kb on + strand at 562.239 kb on - strand at 562.239 kb on - strand at 562.327 kb on + strand at 562.327 kb on + strand at 562.327 kb on + strand at 562.327 kb on + strand at 562.327 kb on + strand at 562.328 kb on - strand at 562.328 kb on - strand at 562.328 kb on - strand at 562.328 kb on - strand at 562.328 kb on - strand at 562.787 kb on - strand at 562.787 kb on - strand at 562.802 kb on - strand at 562.886 kb on - strand at 562.886 kb on - strand at 562.954 kb on + strand at 562.954 kb on + strand at 562.954 kb on + strand at 562.955 kb on - strand at 562.955 kb on - strand at 562.955 kb on - strand at 562.955 kb on - strand at 563.111 kb on + strand, within MPMX19_03242 at 563.111 kb on + strand, within MPMX19_03242 at 563.111 kb on + strand, within MPMX19_03242 at 563.137 kb on + strand, within MPMX19_03242 at 563.137 kb on + strand, within MPMX19_03242 at 563.138 kb on - strand, within MPMX19_03242 at 563.138 kb on - strand, within MPMX19_03242 at 563.197 kb on + strand, within MPMX19_03242 at 563.197 kb on + strand, within MPMX19_03242 at 563.197 kb on + strand, within MPMX19_03242 at 563.197 kb on + strand, within MPMX19_03242 at 563.198 kb on - strand, within MPMX19_03242 at 563.198 kb on - strand, within MPMX19_03242 at 563.296 kb on + strand, within MPMX19_03242 at 563.296 kb on + strand, within MPMX19_03242 at 563.297 kb on - strand, within MPMX19_03242 at 563.297 kb on - strand, within MPMX19_03242 at 563.435 kb on - strand, within MPMX19_03242 at 563.440 kb on + strand, within MPMX19_03242 at 563.441 kb on - strand, within MPMX19_03242 at 563.441 kb on - strand, within MPMX19_03242 at 563.441 kb on - strand, within MPMX19_03242 at 563.623 kb on + strand, within MPMX19_03242 at 563.623 kb on + strand, within MPMX19_03242 at 563.624 kb on - strand, within MPMX19_03242 at 563.624 kb on - strand, within MPMX19_03242 at 563.624 kb on - strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 564.022 kb on + strand, within MPMX19_03242 at 564.022 kb on + strand, within MPMX19_03242 at 564.022 kb on + strand, within MPMX19_03242 at 564.023 kb on - strand, within MPMX19_03242 at 564.311 kb on + strand at 564.311 kb on + strand at 564.312 kb on - strand at 564.312 kb on - strand at 564.549 kb on + strand at 564.550 kb on - strand at 564.550 kb on - strand at 564.740 kb on - strand at 564.740 kb on - strand at 564.748 kb on + strand at 564.749 kb on - strand at 564.749 kb on - strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.798 kb on - strand at 564.798 kb on - strand at 564.798 kb on - strand at 564.798 kb on - strand at 564.798 kb on - strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.836 kb on - strand at 564.836 kb on - strand at 564.836 kb on - strand at 565.303 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.355 kb on + strand, within MPMX19_03243 at 565.355 kb on + strand, within MPMX19_03243 at 565.355 kb on + strand, within MPMX19_03243 at 565.356 kb on - strand, within MPMX19_03243 at 565.356 kb on - strand, within MPMX19_03243
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 561,887 + MPMX19_03241 0.90 -1.6 561,887 + MPMX19_03241 0.90 -0.9 561,887 + MPMX19_03241 0.90 +1.2 561,887 + MPMX19_03241 0.90 -0.7 561,887 + MPMX19_03241 0.90 +1.7 561,887 + MPMX19_03241 0.90 -0.2 561,887 + MPMX19_03241 0.90 +1.1 561,887 + MPMX19_03241 0.90 -0.4 561,887 + MPMX19_03241 0.90 -0.4 561,887 + MPMX19_03241 0.90 +0.5 561,887 + MPMX19_03241 0.90 -0.8 561,887 + MPMX19_03241 0.90 -0.5 561,887 + MPMX19_03241 0.90 -1.1 561,887 + MPMX19_03241 0.90 -0.4 561,887 + MPMX19_03241 0.90 -1.8 561,887 + MPMX19_03241 0.90 -1.4 561,888 - MPMX19_03241 0.90 +0.9 561,888 - MPMX19_03241 0.90 +0.9 561,888 - MPMX19_03241 0.90 -1.1 561,888 - MPMX19_03241 0.90 -0.1 561,888 - MPMX19_03241 0.90 +0.1 561,888 - MPMX19_03241 0.90 +0.5 561,888 - MPMX19_03241 0.90 -0.6 561,891 + MPMX19_03241 0.90 -1.4 561,891 + MPMX19_03241 0.90 -1.1 561,891 + MPMX19_03241 0.90 +0.1 561,891 + MPMX19_03241 0.90 -1.3 561,891 + MPMX19_03241 0.90 -0.6 561,891 + MPMX19_03241 0.90 -2.2 561,891 + MPMX19_03241 0.90 +0.1 561,891 + MPMX19_03241 0.90 +0.8 561,891 + MPMX19_03241 0.90 -1.0 561,891 + MPMX19_03241 0.90 -0.5 561,892 - MPMX19_03241 0.90 -0.2 561,892 - MPMX19_03241 0.90 -0.0 561,892 - MPMX19_03241 0.90 -0.6 561,892 - MPMX19_03241 0.90 +0.7 561,892 - MPMX19_03241 0.90 +0.2 561,972 - -1.0 561,972 - +0.1 562,043 + -1.6 562,091 + +0.5 562,092 - +0.5 562,238 + +0.8 562,238 + -0.0 562,239 - -0.4 562,239 - +0.7 562,327 + -1.5 562,327 + -0.5 562,327 + +0.5 562,327 + -0.6 562,327 + -0.4 562,328 - +1.2 562,328 - -1.1 562,328 - -0.8 562,328 - -0.7 562,328 - +0.1 562,787 - +1.3 562,787 - -1.2 562,802 - -0.1 562,886 - +0.5 562,886 - +0.4 562,954 + +1.7 562,954 + +0.1 562,954 + +0.1 562,955 - +0.2 562,955 - +0.8 562,955 - +1.1 562,955 - -0.7 563,111 + MPMX19_03242 0.18 -0.9 563,111 + MPMX19_03242 0.18 -0.6 563,111 + MPMX19_03242 0.18 -0.9 563,137 + MPMX19_03242 0.20 -2.2 563,137 + MPMX19_03242 0.20 -1.3 563,138 - MPMX19_03242 0.20 +0.7 563,138 - MPMX19_03242 0.20 -1.2 563,197 + MPMX19_03242 0.23 -1.2 563,197 + MPMX19_03242 0.23 +0.1 563,197 + MPMX19_03242 0.23 -1.5 563,197 + MPMX19_03242 0.23 -1.2 563,198 - MPMX19_03242 0.23 +0.8 563,198 - MPMX19_03242 0.23 +1.2 563,296 + MPMX19_03242 0.29 -1.2 563,296 + MPMX19_03242 0.29 -2.7 563,297 - MPMX19_03242 0.29 -2.3 563,297 - MPMX19_03242 0.29 +0.2 563,435 - MPMX19_03242 0.38 -1.1 563,440 + MPMX19_03242 0.38 +1.1 563,441 - MPMX19_03242 0.38 -0.1 563,441 - MPMX19_03242 0.38 +1.1 563,441 - MPMX19_03242 0.38 -0.3 563,623 + MPMX19_03242 0.49 +0.1 563,623 + MPMX19_03242 0.49 -0.5 563,624 - MPMX19_03242 0.49 +0.3 563,624 - MPMX19_03242 0.49 +1.5 563,624 - MPMX19_03242 0.49 -0.9 563,950 + MPMX19_03242 0.69 -1.9 563,950 + MPMX19_03242 0.69 -1.0 563,950 + MPMX19_03242 0.69 -1.8 563,950 + MPMX19_03242 0.69 -1.5 563,950 + MPMX19_03242 0.69 -0.2 563,950 + MPMX19_03242 0.69 +0.1 563,950 + MPMX19_03242 0.69 +0.4 563,950 + MPMX19_03242 0.69 -1.0 563,951 - MPMX19_03242 0.69 +0.1 563,951 - MPMX19_03242 0.69 +0.7 563,951 - MPMX19_03242 0.69 -0.5 563,951 - MPMX19_03242 0.69 -1.4 563,951 - MPMX19_03242 0.69 -0.2 563,951 - MPMX19_03242 0.69 -0.1 563,951 - MPMX19_03242 0.69 -1.5 564,022 + MPMX19_03242 0.73 +0.3 564,022 + MPMX19_03242 0.73 -1.5 564,022 + MPMX19_03242 0.73 +0.9 564,023 - MPMX19_03242 0.73 -0.2 564,311 + +0.2 564,311 + -0.2 564,312 - +0.1 564,312 - -0.9 564,549 + -0.6 564,550 - -1.7 564,550 - +2.1 564,740 - +0.9 564,740 - -0.6 564,748 + +0.3 564,749 - -0.2 564,749 - -0.5 564,797 + -1.5 564,797 + -0.4 564,797 + +0.8 564,797 + -0.1 564,797 + +0.3 564,797 + +1.1 564,797 + -0.2 564,797 + -1.1 564,797 + +0.3 564,797 + -0.4 564,798 - -0.6 564,798 - +0.2 564,798 - -0.2 564,798 - -1.5 564,798 - +0.5 564,799 + -2.1 564,799 + +0.1 564,799 + -0.2 564,799 + -0.7 564,799 + -0.6 564,799 + -0.5 564,799 + -0.4 564,799 + -1.3 564,799 + +0.8 564,799 + -0.5 564,799 + -1.9 564,799 + -0.3 564,800 - +0.1 564,800 - -0.9 564,800 - -0.5 564,800 - +0.5 564,800 - +0.3 564,800 - +0.5 564,800 - +0.9 564,836 - -0.0 564,836 - -0.7 564,836 - +0.5 565,303 + MPMX19_03243 0.46 -0.3 565,304 + MPMX19_03243 0.46 -0.6 565,304 + MPMX19_03243 0.46 -0.6 565,304 + MPMX19_03243 0.46 -1.2 565,304 + MPMX19_03243 0.46 -0.2 565,304 + MPMX19_03243 0.46 -1.3 565,304 + MPMX19_03243 0.46 -0.5 565,304 + MPMX19_03243 0.46 +0.6 565,304 + MPMX19_03243 0.46 -1.6 565,304 + MPMX19_03243 0.46 -0.9 565,304 + MPMX19_03243 0.46 -0.3 565,305 - MPMX19_03243 0.46 -1.6 565,305 - MPMX19_03243 0.46 -0.2 565,305 - MPMX19_03243 0.46 -0.1 565,305 - MPMX19_03243 0.46 -1.5 565,305 - MPMX19_03243 0.46 +1.1 565,305 - MPMX19_03243 0.46 -0.4 565,305 - MPMX19_03243 0.46 -0.4 565,305 - MPMX19_03243 0.46 +0.7 565,355 + MPMX19_03243 0.51 -0.5 565,355 + MPMX19_03243 0.51 -1.6 565,355 + MPMX19_03243 0.51 +0.5 565,356 - MPMX19_03243 0.51 -2.0 565,356 - MPMX19_03243 0.51 +0.1
Or see this region's nucleotide sequence