Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03229

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03228 and MPMX19_03229 overlap by 1 nucleotidesMPMX19_03229 and MPMX19_03230 are separated by 42 nucleotides MPMX19_03228: MPMX19_03228 - L-ornithine N(5)-monooxygenase, at 528,075 to 529,433 _03228 MPMX19_03229: MPMX19_03229 - hypothetical protein, at 529,433 to 530,740 _03229 MPMX19_03230: MPMX19_03230 - hypothetical protein, at 530,783 to 531,835 _03230 Position (kb) 529 530 531Strain fitness (log2 ratio) -2 -1 0 1 2at 528.453 kb on + strand, within MPMX19_03228at 528.657 kb on + strand, within MPMX19_03228at 528.657 kb on + strand, within MPMX19_03228at 528.657 kb on + strand, within MPMX19_03228at 528.657 kb on + strand, within MPMX19_03228at 528.657 kb on + strand, within MPMX19_03228at 528.657 kb on + strand, within MPMX19_03228at 528.657 kb on + strand, within MPMX19_03228at 528.657 kb on + strand, within MPMX19_03228at 528.658 kb on + strand, within MPMX19_03228at 528.658 kb on - strand, within MPMX19_03228at 528.658 kb on - strand, within MPMX19_03228at 528.658 kb on - strand, within MPMX19_03228at 528.658 kb on - strand, within MPMX19_03228at 528.658 kb on - strand, within MPMX19_03228at 528.658 kb on - strand, within MPMX19_03228at 528.862 kb on - strand, within MPMX19_03228at 528.862 kb on - strand, within MPMX19_03228at 528.862 kb on - strand, within MPMX19_03228at 528.864 kb on - strand, within MPMX19_03228at 528.864 kb on - strand, within MPMX19_03228at 528.864 kb on - strand, within MPMX19_03228at 528.918 kb on + strand, within MPMX19_03228at 528.918 kb on + strand, within MPMX19_03228at 528.919 kb on - strand, within MPMX19_03228at 528.933 kb on + strand, within MPMX19_03228at 528.933 kb on + strand, within MPMX19_03228at 528.933 kb on + strand, within MPMX19_03228at 528.933 kb on + strand, within MPMX19_03228at 528.933 kb on + strand, within MPMX19_03228at 528.934 kb on - strand, within MPMX19_03228at 528.934 kb on - strand, within MPMX19_03228at 528.934 kb on - strand, within MPMX19_03228at 528.934 kb on - strand, within MPMX19_03228at 528.934 kb on - strand, within MPMX19_03228at 528.969 kb on + strand, within MPMX19_03228at 528.969 kb on + strand, within MPMX19_03228at 528.969 kb on + strand, within MPMX19_03228at 528.969 kb on + strand, within MPMX19_03228at 528.969 kb on + strand, within MPMX19_03228at 528.970 kb on - strand, within MPMX19_03228at 528.970 kb on - strand, within MPMX19_03228at 528.970 kb on - strand, within MPMX19_03228at 528.970 kb on - strand, within MPMX19_03228at 528.982 kb on - strand, within MPMX19_03228at 528.982 kb on - strand, within MPMX19_03228at 529.116 kb on + strand, within MPMX19_03228at 529.229 kb on + strand, within MPMX19_03228at 529.351 kb on - strandat 529.351 kb on - strandat 529.610 kb on + strand, within MPMX19_03229at 529.611 kb on - strand, within MPMX19_03229at 529.700 kb on + strand, within MPMX19_03229at 529.700 kb on + strand, within MPMX19_03229at 529.700 kb on + strand, within MPMX19_03229at 529.700 kb on + strand, within MPMX19_03229at 529.700 kb on + strand, within MPMX19_03229at 529.700 kb on + strand, within MPMX19_03229at 529.700 kb on + strand, within MPMX19_03229at 529.700 kb on + strand, within MPMX19_03229at 529.700 kb on + strand, within MPMX19_03229at 529.700 kb on + strand, within MPMX19_03229at 529.700 kb on + strand, within MPMX19_03229at 529.700 kb on + strand, within MPMX19_03229at 529.700 kb on + strand, within MPMX19_03229at 529.700 kb on + strand, within MPMX19_03229at 529.701 kb on - strand, within MPMX19_03229at 529.701 kb on - strand, within MPMX19_03229at 529.701 kb on - strand, within MPMX19_03229at 529.701 kb on - strand, within MPMX19_03229at 529.701 kb on - strand, within MPMX19_03229at 529.701 kb on - strand, within MPMX19_03229at 529.701 kb on - strand, within MPMX19_03229at 529.701 kb on - strand, within MPMX19_03229at 529.701 kb on - strand, within MPMX19_03229at 529.701 kb on - strand, within MPMX19_03229at 529.701 kb on - strand, within MPMX19_03229at 529.701 kb on - strand, within MPMX19_03229at 529.701 kb on - strand, within MPMX19_03229at 529.701 kb on - strand, within MPMX19_03229at 529.701 kb on - strand, within MPMX19_03229at 529.701 kb on - strand, within MPMX19_03229at 529.701 kb on - strand, within MPMX19_03229at 529.846 kb on + strand, within MPMX19_03229at 529.847 kb on - strand, within MPMX19_03229at 529.847 kb on - strand, within MPMX19_03229at 529.847 kb on - strand, within MPMX19_03229at 529.883 kb on + strand, within MPMX19_03229at 529.883 kb on + strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.919 kb on + strand, within MPMX19_03229at 529.944 kb on - strand, within MPMX19_03229at 529.958 kb on + strand, within MPMX19_03229at 529.958 kb on + strand, within MPMX19_03229at 529.958 kb on + strand, within MPMX19_03229at 529.958 kb on + strand, within MPMX19_03229at 529.958 kb on + strand, within MPMX19_03229at 529.958 kb on + strand, within MPMX19_03229at 529.958 kb on + strand, within MPMX19_03229at 529.959 kb on - strand, within MPMX19_03229at 529.959 kb on - strand, within MPMX19_03229at 530.069 kb on + strand, within MPMX19_03229at 530.069 kb on + strand, within MPMX19_03229at 530.070 kb on - strand, within MPMX19_03229at 530.070 kb on - strand, within MPMX19_03229at 530.070 kb on - strand, within MPMX19_03229at 530.171 kb on + strand, within MPMX19_03229at 530.171 kb on + strand, within MPMX19_03229at 530.172 kb on - strand, within MPMX19_03229at 530.255 kb on + strand, within MPMX19_03229at 530.282 kb on + strand, within MPMX19_03229at 530.282 kb on + strand, within MPMX19_03229at 530.283 kb on - strand, within MPMX19_03229at 530.283 kb on - strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.690 kb on + strandat 530.690 kb on + strandat 530.690 kb on + strandat 530.691 kb on - strandat 530.691 kb on - strandat 530.691 kb on - strandat 530.691 kb on - strandat 530.691 kb on - strandat 530.691 kb on - strandat 530.691 kb on - strandat 530.797 kb on + strandat 530.798 kb on - strandat 531.233 kb on + strand, within MPMX19_03230at 531.233 kb on + strand, within MPMX19_03230at 531.233 kb on + strand, within MPMX19_03230at 531.233 kb on + strand, within MPMX19_03230at 531.233 kb on + strand, within MPMX19_03230at 531.234 kb on - strand, within MPMX19_03230at 531.234 kb on - strand, within MPMX19_03230at 531.234 kb on - strand, within MPMX19_03230at 531.383 kb on + strand, within MPMX19_03230at 531.384 kb on - strand, within MPMX19_03230at 531.455 kb on + strand, within MPMX19_03230at 531.456 kb on - strand, within MPMX19_03230at 531.456 kb on - strand, within MPMX19_03230at 531.467 kb on + strand, within MPMX19_03230at 531.467 kb on + strand, within MPMX19_03230at 531.468 kb on - strand, within MPMX19_03230at 531.468 kb on - strand, within MPMX19_03230at 531.468 kb on - strand, within MPMX19_03230at 531.468 kb on - strand, within MPMX19_03230at 531.468 kb on - strand, within MPMX19_03230at 531.489 kb on + strand, within MPMX19_03230at 531.490 kb on - strand, within MPMX19_03230at 531.490 kb on - strand, within MPMX19_03230

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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528,453 + MPMX19_03228 0.28 -1.8
528,657 + MPMX19_03228 0.43 -1.5
528,657 + MPMX19_03228 0.43 -1.6
528,657 + MPMX19_03228 0.43 -1.1
528,657 + MPMX19_03228 0.43 -0.8
528,657 + MPMX19_03228 0.43 +0.0
528,657 + MPMX19_03228 0.43 +0.1
528,657 + MPMX19_03228 0.43 -0.4
528,657 + MPMX19_03228 0.43 -0.5
528,658 + MPMX19_03228 0.43 -0.5
528,658 - MPMX19_03228 0.43 +0.3
528,658 - MPMX19_03228 0.43 -1.7
528,658 - MPMX19_03228 0.43 -0.4
528,658 - MPMX19_03228 0.43 -0.7
528,658 - MPMX19_03228 0.43 -1.1
528,658 - MPMX19_03228 0.43 -0.1
528,862 - MPMX19_03228 0.58 -1.3
528,862 - MPMX19_03228 0.58 -0.0
528,862 - MPMX19_03228 0.58 +0.1
528,864 - MPMX19_03228 0.58 -0.0
528,864 - MPMX19_03228 0.58 -0.6
528,864 - MPMX19_03228 0.58 -0.4
528,918 + MPMX19_03228 0.62 -0.2
528,918 + MPMX19_03228 0.62 +1.5
528,919 - MPMX19_03228 0.62 -0.1
528,933 + MPMX19_03228 0.63 -0.8
528,933 + MPMX19_03228 0.63 -0.2
528,933 + MPMX19_03228 0.63 +0.9
528,933 + MPMX19_03228 0.63 -1.1
528,933 + MPMX19_03228 0.63 +1.7
528,934 - MPMX19_03228 0.63 -0.2
528,934 - MPMX19_03228 0.63 -1.0
528,934 - MPMX19_03228 0.63 -0.0
528,934 - MPMX19_03228 0.63 -0.2
528,934 - MPMX19_03228 0.63 +0.9
528,969 + MPMX19_03228 0.66 -1.1
528,969 + MPMX19_03228 0.66 -1.8
528,969 + MPMX19_03228 0.66 -1.5
528,969 + MPMX19_03228 0.66 +0.3
528,969 + MPMX19_03228 0.66 -1.8
528,970 - MPMX19_03228 0.66 -0.5
528,970 - MPMX19_03228 0.66 -0.4
528,970 - MPMX19_03228 0.66 -2.4
528,970 - MPMX19_03228 0.66 -1.6
528,982 - MPMX19_03228 0.67 +1.6
528,982 - MPMX19_03228 0.67 -1.0
529,116 + MPMX19_03228 0.77 -1.4
529,229 + MPMX19_03228 0.85 -1.6
529,351 - +2.1
529,351 - -0.9
529,610 + MPMX19_03229 0.14 +0.2
529,611 - MPMX19_03229 0.14 +0.0
529,700 + MPMX19_03229 0.20 +0.1
529,700 + MPMX19_03229 0.20 +0.2
529,700 + MPMX19_03229 0.20 -2.2
529,700 + MPMX19_03229 0.20 -0.1
529,700 + MPMX19_03229 0.20 -1.8
529,700 + MPMX19_03229 0.20 -0.9
529,700 + MPMX19_03229 0.20 +0.5
529,700 + MPMX19_03229 0.20 -1.9
529,700 + MPMX19_03229 0.20 -0.8
529,700 + MPMX19_03229 0.20 +1.8
529,700 + MPMX19_03229 0.20 +0.3
529,700 + MPMX19_03229 0.20 -0.6
529,700 + MPMX19_03229 0.20 +1.4
529,700 + MPMX19_03229 0.20 -0.2
529,701 - MPMX19_03229 0.20 +0.3
529,701 - MPMX19_03229 0.20 +0.5
529,701 - MPMX19_03229 0.20 -0.1
529,701 - MPMX19_03229 0.20 -1.4
529,701 - MPMX19_03229 0.20 +0.5
529,701 - MPMX19_03229 0.20 -1.2
529,701 - MPMX19_03229 0.20 +0.3
529,701 - MPMX19_03229 0.20 -1.2
529,701 - MPMX19_03229 0.20 -0.1
529,701 - MPMX19_03229 0.20 -0.2
529,701 - MPMX19_03229 0.20 -0.5
529,701 - MPMX19_03229 0.20 -1.4
529,701 - MPMX19_03229 0.20 -0.2
529,701 - MPMX19_03229 0.20 -0.8
529,701 - MPMX19_03229 0.20 -1.6
529,701 - MPMX19_03229 0.20 +0.3
529,701 - MPMX19_03229 0.20 -1.4
529,846 + MPMX19_03229 0.32 +0.1
529,847 - MPMX19_03229 0.32 +0.1
529,847 - MPMX19_03229 0.32 -0.9
529,847 - MPMX19_03229 0.32 +0.9
529,883 + MPMX19_03229 0.34 -0.2
529,883 + MPMX19_03229 0.34 -1.3
529,884 - MPMX19_03229 0.34 -0.9
529,884 - MPMX19_03229 0.34 +1.2
529,884 - MPMX19_03229 0.34 +0.7
529,884 - MPMX19_03229 0.34 -2.4
529,884 - MPMX19_03229 0.34 -0.7
529,884 - MPMX19_03229 0.34 -0.7
529,884 - MPMX19_03229 0.34 -1.9
529,884 - MPMX19_03229 0.34 -0.4
529,884 - MPMX19_03229 0.34 +0.6
529,919 + MPMX19_03229 0.37 -0.2
529,944 - MPMX19_03229 0.39 -1.6
529,958 + MPMX19_03229 0.40 +0.8
529,958 + MPMX19_03229 0.40 +0.3
529,958 + MPMX19_03229 0.40 -0.7
529,958 + MPMX19_03229 0.40 +0.4
529,958 + MPMX19_03229 0.40 -0.6
529,958 + MPMX19_03229 0.40 +0.1
529,958 + MPMX19_03229 0.40 -1.4
529,959 - MPMX19_03229 0.40 +0.1
529,959 - MPMX19_03229 0.40 +2.1
530,069 + MPMX19_03229 0.49 -1.3
530,069 + MPMX19_03229 0.49 +0.7
530,070 - MPMX19_03229 0.49 -0.1
530,070 - MPMX19_03229 0.49 +0.3
530,070 - MPMX19_03229 0.49 -0.5
530,171 + MPMX19_03229 0.56 -0.5
530,171 + MPMX19_03229 0.56 -0.4
530,172 - MPMX19_03229 0.56 +1.7
530,255 + MPMX19_03229 0.63 +0.7
530,282 + MPMX19_03229 0.65 -1.4
530,282 + MPMX19_03229 0.65 -0.6
530,283 - MPMX19_03229 0.65 -2.7
530,283 - MPMX19_03229 0.65 -0.9
530,294 + MPMX19_03229 0.66 -0.7
530,294 + MPMX19_03229 0.66 -1.0
530,294 + MPMX19_03229 0.66 -0.2
530,294 + MPMX19_03229 0.66 -0.2
530,294 + MPMX19_03229 0.66 -1.1
530,294 + MPMX19_03229 0.66 +0.4
530,294 + MPMX19_03229 0.66 -0.2
530,294 + MPMX19_03229 0.66 -0.1
530,294 + MPMX19_03229 0.66 -1.2
530,294 + MPMX19_03229 0.66 +0.6
530,294 + MPMX19_03229 0.66 +0.0
530,294 + MPMX19_03229 0.66 +0.4
530,294 + MPMX19_03229 0.66 -0.7
530,294 + MPMX19_03229 0.66 +0.8
530,294 + MPMX19_03229 0.66 -1.5
530,294 + MPMX19_03229 0.66 -0.4
530,294 + MPMX19_03229 0.66 +0.2
530,294 + MPMX19_03229 0.66 -1.5
530,294 + MPMX19_03229 0.66 -0.4
530,294 + MPMX19_03229 0.66 -0.7
530,295 - MPMX19_03229 0.66 +1.2
530,295 - MPMX19_03229 0.66 +0.7
530,295 - MPMX19_03229 0.66 -1.0
530,295 - MPMX19_03229 0.66 +0.2
530,295 - MPMX19_03229 0.66 +0.1
530,295 - MPMX19_03229 0.66 -1.0
530,295 - MPMX19_03229 0.66 -2.0
530,295 - MPMX19_03229 0.66 +1.3
530,295 - MPMX19_03229 0.66 -1.4
530,295 - MPMX19_03229 0.66 -0.9
530,295 - MPMX19_03229 0.66 -0.4
530,295 - MPMX19_03229 0.66 -1.1
530,295 - MPMX19_03229 0.66 -0.5
530,295 - MPMX19_03229 0.66 -1.1
530,295 - MPMX19_03229 0.66 +0.4
530,295 - MPMX19_03229 0.66 -0.5
530,295 - MPMX19_03229 0.66 -1.1
530,295 - MPMX19_03229 0.66 -0.3
530,295 - MPMX19_03229 0.66 -0.4
530,295 - MPMX19_03229 0.66 -0.5
530,295 - MPMX19_03229 0.66 +0.9
530,295 - MPMX19_03229 0.66 -1.0
530,295 - MPMX19_03229 0.66 -1.1
530,295 - MPMX19_03229 0.66 -0.1
530,295 - MPMX19_03229 0.66 -0.8
530,295 - MPMX19_03229 0.66 -2.4
530,295 - MPMX19_03229 0.66 -0.2
530,295 - MPMX19_03229 0.66 -1.2
530,295 - MPMX19_03229 0.66 -1.4
530,295 - MPMX19_03229 0.66 -0.4
530,295 - MPMX19_03229 0.66 -0.3
530,295 - MPMX19_03229 0.66 +0.0
530,295 - MPMX19_03229 0.66 -1.6
530,295 - MPMX19_03229 0.66 -0.7
530,690 + -0.2
530,690 + -0.1
530,690 + +0.9
530,691 - -0.2
530,691 - -1.5
530,691 - -2.1
530,691 - +0.3
530,691 - +0.4
530,691 - +1.0
530,691 - -0.1
530,797 + -1.0
530,798 - +0.8
531,233 + MPMX19_03230 0.43 +0.6
531,233 + MPMX19_03230 0.43 -0.4
531,233 + MPMX19_03230 0.43 +0.3
531,233 + MPMX19_03230 0.43 -1.1
531,233 + MPMX19_03230 0.43 -0.5
531,234 - MPMX19_03230 0.43 -0.1
531,234 - MPMX19_03230 0.43 -0.5
531,234 - MPMX19_03230 0.43 -0.5
531,383 + MPMX19_03230 0.57 +0.3
531,384 - MPMX19_03230 0.57 -0.5
531,455 + MPMX19_03230 0.64 +0.5
531,456 - MPMX19_03230 0.64 +0.7
531,456 - MPMX19_03230 0.64 +0.9
531,467 + MPMX19_03230 0.65 -0.6
531,467 + MPMX19_03230 0.65 -0.5
531,468 - MPMX19_03230 0.65 -0.2
531,468 - MPMX19_03230 0.65 -0.7
531,468 - MPMX19_03230 0.65 -0.5
531,468 - MPMX19_03230 0.65 +0.2
531,468 - MPMX19_03230 0.65 -0.2
531,489 + MPMX19_03230 0.67 -0.7
531,490 - MPMX19_03230 0.67 -0.5
531,490 - MPMX19_03230 0.67 -0.7

Or see this region's nucleotide sequence