Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03217 and MPMX19_03218 are separated by 488 nucleotides MPMX19_03218 and MPMX19_03219 are separated by 186 nucleotides
MPMX19_03217: MPMX19_03217 - 2-haloacrylate reductase, at 516,204 to 517,205
_03217
MPMX19_03218: MPMX19_03218 - Haloalkane dehalogenase, at 517,694 to 518,767
_03218
MPMX19_03219: MPMX19_03219 - putative ABC transporter ATP-binding protein YheS, at 518,954 to 520,552
_03219
Position (kb) 517
518
519 Strain fitness (log2 ratio) -2
-1
0
1
2 at 516.717 kb on + strand, within MPMX19_03217 at 516.718 kb on - strand, within MPMX19_03217 at 516.718 kb on - strand, within MPMX19_03217 at 516.718 kb on - strand, within MPMX19_03217 at 516.937 kb on - strand, within MPMX19_03217 at 517.052 kb on + strand, within MPMX19_03217 at 517.053 kb on - strand, within MPMX19_03217 at 517.053 kb on - strand, within MPMX19_03217 at 517.053 kb on - strand, within MPMX19_03217 at 517.142 kb on + strand at 517.143 kb on - strand at 517.236 kb on + strand at 517.344 kb on + strand at 517.365 kb on + strand at 517.365 kb on + strand at 517.365 kb on + strand at 517.365 kb on + strand at 517.365 kb on + strand at 517.365 kb on + strand at 517.365 kb on + strand at 517.365 kb on + strand at 517.365 kb on + strand at 517.365 kb on + strand at 517.365 kb on + strand at 517.365 kb on + strand at 517.365 kb on + strand at 517.365 kb on + strand at 517.365 kb on + strand at 517.365 kb on + strand at 517.365 kb on + strand at 517.366 kb on - strand at 517.366 kb on - strand at 517.366 kb on - strand at 517.366 kb on - strand at 517.366 kb on - strand at 517.366 kb on - strand at 517.366 kb on - strand at 517.366 kb on - strand at 517.366 kb on - strand at 517.366 kb on - strand at 517.547 kb on + strand at 517.547 kb on + strand at 517.547 kb on + strand at 517.548 kb on - strand at 517.548 kb on - strand at 517.548 kb on - strand at 517.587 kb on + strand at 517.587 kb on + strand at 517.587 kb on + strand at 517.588 kb on - strand at 517.626 kb on + strand at 517.626 kb on + strand at 517.627 kb on - strand at 517.627 kb on - strand at 517.627 kb on - strand at 517.627 kb on - strand at 517.627 kb on - strand at 517.627 kb on - strand at 517.715 kb on + strand at 517.716 kb on - strand at 517.791 kb on + strand at 517.792 kb on - strand at 517.815 kb on + strand, within MPMX19_03218 at 517.815 kb on + strand, within MPMX19_03218 at 517.815 kb on + strand, within MPMX19_03218 at 517.815 kb on + strand, within MPMX19_03218 at 517.816 kb on - strand, within MPMX19_03218 at 517.816 kb on - strand, within MPMX19_03218 at 517.816 kb on - strand, within MPMX19_03218 at 517.816 kb on - strand, within MPMX19_03218 at 517.816 kb on - strand, within MPMX19_03218 at 517.816 kb on - strand, within MPMX19_03218 at 517.816 kb on - strand, within MPMX19_03218 at 517.816 kb on - strand, within MPMX19_03218 at 517.920 kb on + strand, within MPMX19_03218 at 517.920 kb on + strand, within MPMX19_03218 at 517.920 kb on + strand, within MPMX19_03218 at 517.920 kb on + strand, within MPMX19_03218 at 517.920 kb on + strand, within MPMX19_03218 at 517.920 kb on + strand, within MPMX19_03218 at 517.920 kb on + strand, within MPMX19_03218 at 517.921 kb on - strand, within MPMX19_03218 at 517.921 kb on - strand, within MPMX19_03218 at 517.921 kb on - strand, within MPMX19_03218 at 517.921 kb on - strand, within MPMX19_03218 at 517.959 kb on + strand, within MPMX19_03218 at 517.959 kb on + strand, within MPMX19_03218 at 517.960 kb on - strand, within MPMX19_03218 at 517.960 kb on - strand, within MPMX19_03218 at 517.960 kb on - strand, within MPMX19_03218 at 518.086 kb on + strand, within MPMX19_03218 at 518.087 kb on - strand, within MPMX19_03218 at 518.087 kb on - strand, within MPMX19_03218 at 518.088 kb on + strand, within MPMX19_03218 at 518.088 kb on + strand, within MPMX19_03218 at 518.088 kb on + strand, within MPMX19_03218 at 518.089 kb on - strand, within MPMX19_03218 at 518.127 kb on + strand, within MPMX19_03218 at 518.128 kb on - strand, within MPMX19_03218 at 518.128 kb on - strand, within MPMX19_03218 at 518.128 kb on - strand, within MPMX19_03218 at 518.131 kb on - strand, within MPMX19_03218 at 518.131 kb on - strand, within MPMX19_03218 at 518.136 kb on + strand, within MPMX19_03218 at 518.137 kb on - strand, within MPMX19_03218 at 518.137 kb on - strand, within MPMX19_03218 at 518.137 kb on - strand, within MPMX19_03218 at 518.203 kb on - strand, within MPMX19_03218 at 518.284 kb on - strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.469 kb on + strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.470 kb on - strand, within MPMX19_03218 at 518.484 kb on + strand, within MPMX19_03218 at 518.484 kb on + strand, within MPMX19_03218 at 518.484 kb on + strand, within MPMX19_03218 at 518.485 kb on - strand, within MPMX19_03218 at 518.485 kb on - strand, within MPMX19_03218 at 518.542 kb on - strand, within MPMX19_03218 at 518.542 kb on - strand, within MPMX19_03218 at 518.769 kb on + strand at 518.769 kb on + strand at 518.769 kb on + strand at 518.769 kb on + strand at 518.769 kb on + strand at 518.769 kb on + strand at 518.769 kb on + strand at 518.769 kb on + strand at 518.770 kb on - strand at 518.770 kb on - strand at 518.770 kb on - strand at 518.770 kb on - strand at 518.770 kb on - strand at 518.770 kb on - strand at 518.770 kb on - strand at 518.770 kb on - strand at 518.789 kb on + strand at 518.789 kb on + strand at 518.819 kb on + strand at 518.819 kb on + strand at 518.819 kb on + strand at 518.819 kb on + strand at 518.819 kb on + strand at 518.820 kb on - strand at 518.820 kb on - strand at 518.820 kb on - strand at 518.820 kb on - strand at 518.862 kb on + strand at 518.862 kb on + strand at 518.862 kb on + strand at 518.862 kb on + strand at 518.862 kb on + strand at 518.863 kb on - strand at 518.863 kb on - strand at 518.863 kb on - strand at 518.891 kb on + strand at 518.891 kb on + strand at 518.891 kb on + strand at 518.892 kb on - strand at 518.955 kb on + strand at 518.955 kb on + strand at 518.955 kb on + strand at 518.955 kb on + strand at 518.956 kb on - strand at 519.057 kb on + strand at 519.057 kb on + strand at 519.057 kb on + strand at 519.057 kb on + strand at 519.057 kb on + strand at 519.058 kb on - strand at 519.058 kb on - strand at 519.058 kb on - strand at 519.058 kb on - strand at 519.416 kb on + strand, within MPMX19_03219 at 519.416 kb on + strand, within MPMX19_03219 at 519.416 kb on + strand, within MPMX19_03219 at 519.416 kb on + strand, within MPMX19_03219 at 519.416 kb on + strand, within MPMX19_03219 at 519.416 kb on + strand, within MPMX19_03219 at 519.417 kb on - strand, within MPMX19_03219 at 519.417 kb on - strand, within MPMX19_03219 at 519.417 kb on - strand, within MPMX19_03219 at 519.417 kb on - strand, within MPMX19_03219
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 516,717 + MPMX19_03217 0.51 +0.1 516,718 - MPMX19_03217 0.51 -1.5 516,718 - MPMX19_03217 0.51 -0.3 516,718 - MPMX19_03217 0.51 +0.5 516,937 - MPMX19_03217 0.73 -1.4 517,052 + MPMX19_03217 0.85 -0.4 517,053 - MPMX19_03217 0.85 -0.9 517,053 - MPMX19_03217 0.85 -0.3 517,053 - MPMX19_03217 0.85 -1.1 517,142 + +0.3 517,143 - -2.0 517,236 + -1.4 517,344 + -2.7 517,365 + +1.5 517,365 + -1.1 517,365 + +0.3 517,365 + -0.2 517,365 + -0.7 517,365 + +0.6 517,365 + -0.5 517,365 + +0.3 517,365 + -1.3 517,365 + -0.1 517,365 + +0.1 517,365 + -0.1 517,365 + -1.6 517,365 + -1.0 517,365 + -0.5 517,365 + -0.5 517,365 + +0.2 517,366 - -0.6 517,366 - +0.2 517,366 - -0.2 517,366 - +0.3 517,366 - +0.3 517,366 - +0.3 517,366 - -0.6 517,366 - -2.1 517,366 - -2.1 517,366 - -1.1 517,547 + -1.0 517,547 + -0.5 517,547 + +0.8 517,548 - -0.5 517,548 - -1.4 517,548 - +0.0 517,587 + -0.2 517,587 + -0.7 517,587 + -0.2 517,588 - -0.9 517,626 + +0.1 517,626 + +0.4 517,627 - -2.6 517,627 - -0.2 517,627 - -1.5 517,627 - +0.5 517,627 - +0.1 517,627 - -1.0 517,715 + -0.0 517,716 - -1.0 517,791 + -0.4 517,792 - -0.7 517,815 + MPMX19_03218 0.11 -1.6 517,815 + MPMX19_03218 0.11 +0.1 517,815 + MPMX19_03218 0.11 +0.5 517,815 + MPMX19_03218 0.11 -0.2 517,816 - MPMX19_03218 0.11 -1.5 517,816 - MPMX19_03218 0.11 +0.1 517,816 - MPMX19_03218 0.11 -0.7 517,816 - MPMX19_03218 0.11 -1.0 517,816 - MPMX19_03218 0.11 -0.5 517,816 - MPMX19_03218 0.11 -0.3 517,816 - MPMX19_03218 0.11 -0.4 517,816 - MPMX19_03218 0.11 -1.2 517,920 + MPMX19_03218 0.21 -1.1 517,920 + MPMX19_03218 0.21 -0.2 517,920 + MPMX19_03218 0.21 +1.3 517,920 + MPMX19_03218 0.21 +0.5 517,920 + MPMX19_03218 0.21 +0.1 517,920 + MPMX19_03218 0.21 -1.7 517,920 + MPMX19_03218 0.21 -0.5 517,921 - MPMX19_03218 0.21 -1.4 517,921 - MPMX19_03218 0.21 +2.1 517,921 - MPMX19_03218 0.21 +0.1 517,921 - MPMX19_03218 0.21 +0.3 517,959 + MPMX19_03218 0.25 -0.7 517,959 + MPMX19_03218 0.25 -1.4 517,960 - MPMX19_03218 0.25 -1.5 517,960 - MPMX19_03218 0.25 -0.6 517,960 - MPMX19_03218 0.25 -0.6 518,086 + MPMX19_03218 0.36 -1.6 518,087 - MPMX19_03218 0.37 -2.1 518,087 - MPMX19_03218 0.37 -0.9 518,088 + MPMX19_03218 0.37 +0.4 518,088 + MPMX19_03218 0.37 -2.0 518,088 + MPMX19_03218 0.37 -0.8 518,089 - MPMX19_03218 0.37 +0.4 518,127 + MPMX19_03218 0.40 -0.2 518,128 - MPMX19_03218 0.40 -1.1 518,128 - MPMX19_03218 0.40 -1.1 518,128 - MPMX19_03218 0.40 -0.9 518,131 - MPMX19_03218 0.41 -1.4 518,131 - MPMX19_03218 0.41 -0.7 518,136 + MPMX19_03218 0.41 +0.1 518,137 - MPMX19_03218 0.41 +0.6 518,137 - MPMX19_03218 0.41 -1.3 518,137 - MPMX19_03218 0.41 -1.7 518,203 - MPMX19_03218 0.47 -0.5 518,284 - MPMX19_03218 0.55 -0.7 518,469 + MPMX19_03218 0.72 -0.6 518,469 + MPMX19_03218 0.72 -0.6 518,469 + MPMX19_03218 0.72 -0.7 518,469 + MPMX19_03218 0.72 -0.1 518,469 + MPMX19_03218 0.72 -0.7 518,469 + MPMX19_03218 0.72 +0.0 518,469 + MPMX19_03218 0.72 +1.4 518,469 + MPMX19_03218 0.72 +1.3 518,469 + MPMX19_03218 0.72 +0.0 518,469 + MPMX19_03218 0.72 -1.8 518,469 + MPMX19_03218 0.72 -0.8 518,469 + MPMX19_03218 0.72 -0.3 518,469 + MPMX19_03218 0.72 +0.5 518,469 + MPMX19_03218 0.72 -0.5 518,469 + MPMX19_03218 0.72 -0.2 518,469 + MPMX19_03218 0.72 -0.6 518,469 + MPMX19_03218 0.72 +0.0 518,469 + MPMX19_03218 0.72 -2.1 518,469 + MPMX19_03218 0.72 -1.0 518,469 + MPMX19_03218 0.72 +0.1 518,469 + MPMX19_03218 0.72 -1.9 518,469 + MPMX19_03218 0.72 -1.2 518,469 + MPMX19_03218 0.72 -1.9 518,469 + MPMX19_03218 0.72 -1.1 518,469 + MPMX19_03218 0.72 -2.1 518,469 + MPMX19_03218 0.72 -0.2 518,469 + MPMX19_03218 0.72 +1.7 518,469 + MPMX19_03218 0.72 +1.3 518,470 - MPMX19_03218 0.72 +1.1 518,470 - MPMX19_03218 0.72 +0.5 518,470 - MPMX19_03218 0.72 -0.7 518,470 - MPMX19_03218 0.72 +1.1 518,470 - MPMX19_03218 0.72 -1.8 518,470 - MPMX19_03218 0.72 +0.2 518,470 - MPMX19_03218 0.72 -1.4 518,470 - MPMX19_03218 0.72 -0.8 518,470 - MPMX19_03218 0.72 +0.3 518,470 - MPMX19_03218 0.72 -0.7 518,470 - MPMX19_03218 0.72 -0.9 518,470 - MPMX19_03218 0.72 -0.1 518,470 - MPMX19_03218 0.72 +0.7 518,470 - MPMX19_03218 0.72 -0.9 518,470 - MPMX19_03218 0.72 -1.1 518,470 - MPMX19_03218 0.72 +1.7 518,470 - MPMX19_03218 0.72 -1.5 518,470 - MPMX19_03218 0.72 -0.9 518,470 - MPMX19_03218 0.72 -0.1 518,470 - MPMX19_03218 0.72 +0.8 518,470 - MPMX19_03218 0.72 +0.1 518,470 - MPMX19_03218 0.72 +0.5 518,470 - MPMX19_03218 0.72 -1.9 518,470 - MPMX19_03218 0.72 -0.9 518,470 - MPMX19_03218 0.72 +0.9 518,470 - MPMX19_03218 0.72 -2.6 518,470 - MPMX19_03218 0.72 -0.7 518,470 - MPMX19_03218 0.72 -1.0 518,484 + MPMX19_03218 0.74 -1.8 518,484 + MPMX19_03218 0.74 -0.6 518,484 + MPMX19_03218 0.74 -0.3 518,485 - MPMX19_03218 0.74 +0.4 518,485 - MPMX19_03218 0.74 +1.7 518,542 - MPMX19_03218 0.79 -0.5 518,542 - MPMX19_03218 0.79 -0.1 518,769 + +0.3 518,769 + +1.7 518,769 + +1.2 518,769 + -1.5 518,769 + -0.9 518,769 + -0.2 518,769 + +1.1 518,769 + +0.1 518,770 - -1.0 518,770 - -0.8 518,770 - +0.5 518,770 - -0.5 518,770 - +1.7 518,770 - -1.1 518,770 - -2.0 518,770 - -0.4 518,789 + +0.8 518,789 + +1.9 518,819 + -0.3 518,819 + -0.6 518,819 + +1.1 518,819 + -0.2 518,819 + -1.6 518,820 - -0.2 518,820 - +0.1 518,820 - -0.1 518,820 - -0.7 518,862 + -0.9 518,862 + -0.4 518,862 + +1.1 518,862 + -0.0 518,862 + +1.1 518,863 - -1.8 518,863 - -0.6 518,863 - -0.3 518,891 + +0.5 518,891 + +0.7 518,891 + -0.6 518,892 - -1.2 518,955 + -0.7 518,955 + +0.3 518,955 + -0.5 518,955 + -0.7 518,956 - -0.2 519,057 + -0.5 519,057 + -0.3 519,057 + -1.2 519,057 + -0.5 519,057 + +0.2 519,058 - -1.1 519,058 - +0.5 519,058 - -2.7 519,058 - -0.2 519,416 + MPMX19_03219 0.29 -0.9 519,416 + MPMX19_03219 0.29 -0.6 519,416 + MPMX19_03219 0.29 +0.1 519,416 + MPMX19_03219 0.29 -0.9 519,416 + MPMX19_03219 0.29 -0.8 519,416 + MPMX19_03219 0.29 -0.8 519,417 - MPMX19_03219 0.29 -0.6 519,417 - MPMX19_03219 0.29 -0.9 519,417 - MPMX19_03219 0.29 -0.1 519,417 - MPMX19_03219 0.29 +1.0
Or see this region's nucleotide sequence