Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03213

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03211 and MPMX19_03212 are separated by 28 nucleotidesMPMX19_03212 and MPMX19_03213 are separated by 93 nucleotidesMPMX19_03213 and MPMX19_03214 are separated by 18 nucleotides MPMX19_03211: MPMX19_03211 - hypothetical protein, at 510,340 to 511,605 _03211 MPMX19_03212: MPMX19_03212 - hypothetical protein, at 511,634 to 512,077 _03212 MPMX19_03213: MPMX19_03213 - hypothetical protein, at 512,171 to 512,656 _03213 MPMX19_03214: MPMX19_03214 - hypothetical protein, at 512,675 to 514,129 _03214 Position (kb) 512 513Strain fitness (log2 ratio) -2 -1 0 1 2at 511.205 kb on - strand, within MPMX19_03211at 511.246 kb on + strand, within MPMX19_03211at 511.247 kb on - strand, within MPMX19_03211at 511.247 kb on - strand, within MPMX19_03211at 511.334 kb on - strand, within MPMX19_03211at 511.334 kb on - strand, within MPMX19_03211at 511.334 kb on - strand, within MPMX19_03211at 511.334 kb on - strand, within MPMX19_03211at 511.334 kb on - strand, within MPMX19_03211at 511.334 kb on - strand, within MPMX19_03211at 511.334 kb on - strand, within MPMX19_03211at 511.372 kb on + strand, within MPMX19_03211at 511.372 kb on + strand, within MPMX19_03211at 511.372 kb on + strand, within MPMX19_03211at 511.373 kb on - strand, within MPMX19_03211at 511.373 kb on - strand, within MPMX19_03211at 511.459 kb on + strand, within MPMX19_03211at 511.507 kb on + strandat 511.508 kb on - strandat 511.620 kb on - strandat 511.622 kb on - strandat 511.622 kb on - strandat 511.794 kb on - strand, within MPMX19_03212at 511.813 kb on + strand, within MPMX19_03212at 511.813 kb on + strand, within MPMX19_03212at 511.813 kb on + strand, within MPMX19_03212at 511.813 kb on + strand, within MPMX19_03212at 511.813 kb on + strand, within MPMX19_03212at 511.814 kb on - strand, within MPMX19_03212at 512.003 kb on + strand, within MPMX19_03212at 512.003 kb on + strand, within MPMX19_03212at 512.003 kb on + strand, within MPMX19_03212at 512.004 kb on - strand, within MPMX19_03212at 512.004 kb on - strand, within MPMX19_03212at 512.324 kb on + strand, within MPMX19_03213at 512.324 kb on + strand, within MPMX19_03213at 512.324 kb on + strand, within MPMX19_03213at 512.325 kb on - strand, within MPMX19_03213at 512.393 kb on - strand, within MPMX19_03213at 512.468 kb on + strand, within MPMX19_03213at 512.468 kb on + strand, within MPMX19_03213at 512.718 kb on + strandat 512.718 kb on + strandat 512.718 kb on + strandat 512.718 kb on + strandat 512.718 kb on + strandat 512.718 kb on + strandat 512.718 kb on + strandat 512.718 kb on + strandat 512.718 kb on + strandat 512.718 kb on + strandat 512.718 kb on + strandat 512.718 kb on + strandat 512.718 kb on + strandat 512.719 kb on - strandat 512.719 kb on - strandat 512.719 kb on - strandat 512.719 kb on - strandat 512.719 kb on - strandat 512.719 kb on - strandat 512.719 kb on - strandat 512.719 kb on - strandat 512.719 kb on - strandat 512.719 kb on - strandat 512.719 kb on - strandat 512.719 kb on - strandat 512.719 kb on - strandat 512.719 kb on - strandat 512.719 kb on - strandat 512.719 kb on - strandat 512.719 kb on - strandat 512.804 kb on + strandat 512.804 kb on + strandat 512.805 kb on - strandat 512.805 kb on - strandat 512.805 kb on - strandat 512.805 kb on - strandat 512.805 kb on - strandat 512.915 kb on + strand, within MPMX19_03214at 512.915 kb on + strand, within MPMX19_03214at 512.915 kb on + strand, within MPMX19_03214at 512.916 kb on - strand, within MPMX19_03214at 512.916 kb on - strand, within MPMX19_03214at 512.916 kb on - strand, within MPMX19_03214at 512.916 kb on - strand, within MPMX19_03214at 512.928 kb on + strand, within MPMX19_03214at 512.928 kb on + strand, within MPMX19_03214at 512.928 kb on + strand, within MPMX19_03214at 512.928 kb on + strand, within MPMX19_03214at 512.928 kb on + strand, within MPMX19_03214at 512.928 kb on + strand, within MPMX19_03214at 512.929 kb on - strand, within MPMX19_03214at 512.929 kb on - strand, within MPMX19_03214at 512.929 kb on - strand, within MPMX19_03214at 512.929 kb on - strand, within MPMX19_03214at 512.929 kb on - strand, within MPMX19_03214at 512.929 kb on - strand, within MPMX19_03214at 512.929 kb on - strand, within MPMX19_03214at 512.929 kb on - strand, within MPMX19_03214at 512.929 kb on - strand, within MPMX19_03214at 512.929 kb on - strand, within MPMX19_03214at 513.025 kb on + strand, within MPMX19_03214at 513.025 kb on + strand, within MPMX19_03214at 513.026 kb on - strand, within MPMX19_03214at 513.026 kb on - strand, within MPMX19_03214at 513.026 kb on - strand, within MPMX19_03214at 513.026 kb on - strand, within MPMX19_03214at 513.026 kb on - strand, within MPMX19_03214at 513.026 kb on - strand, within MPMX19_03214at 513.044 kb on + strand, within MPMX19_03214at 513.044 kb on + strand, within MPMX19_03214at 513.044 kb on + strand, within MPMX19_03214at 513.044 kb on + strand, within MPMX19_03214at 513.044 kb on + strand, within MPMX19_03214at 513.044 kb on + strand, within MPMX19_03214at 513.044 kb on + strand, within MPMX19_03214at 513.044 kb on + strand, within MPMX19_03214at 513.044 kb on + strand, within MPMX19_03214at 513.045 kb on - strand, within MPMX19_03214at 513.045 kb on - strand, within MPMX19_03214at 513.045 kb on - strand, within MPMX19_03214at 513.045 kb on - strand, within MPMX19_03214at 513.045 kb on - strand, within MPMX19_03214at 513.045 kb on - strand, within MPMX19_03214at 513.045 kb on - strand, within MPMX19_03214at 513.045 kb on - strand, within MPMX19_03214at 513.045 kb on - strand, within MPMX19_03214at 513.045 kb on - strand, within MPMX19_03214at 513.045 kb on - strand, within MPMX19_03214at 513.122 kb on + strand, within MPMX19_03214at 513.122 kb on + strand, within MPMX19_03214at 513.122 kb on + strand, within MPMX19_03214at 513.122 kb on + strand, within MPMX19_03214at 513.122 kb on + strand, within MPMX19_03214at 513.122 kb on + strand, within MPMX19_03214at 513.122 kb on + strand, within MPMX19_03214at 513.122 kb on + strand, within MPMX19_03214at 513.122 kb on + strand, within MPMX19_03214at 513.122 kb on + strand, within MPMX19_03214at 513.122 kb on + strand, within MPMX19_03214at 513.123 kb on - strand, within MPMX19_03214at 513.123 kb on - strand, within MPMX19_03214at 513.123 kb on - strand, within MPMX19_03214at 513.123 kb on - strand, within MPMX19_03214at 513.123 kb on - strand, within MPMX19_03214at 513.123 kb on - strand, within MPMX19_03214at 513.123 kb on - strand, within MPMX19_03214at 513.123 kb on - strand, within MPMX19_03214at 513.123 kb on - strand, within MPMX19_03214at 513.123 kb on - strand, within MPMX19_03214at 513.123 kb on - strand, within MPMX19_03214at 513.123 kb on - strand, within MPMX19_03214at 513.123 kb on - strand, within MPMX19_03214at 513.169 kb on + strand, within MPMX19_03214at 513.169 kb on + strand, within MPMX19_03214at 513.169 kb on + strand, within MPMX19_03214at 513.169 kb on + strand, within MPMX19_03214at 513.169 kb on + strand, within MPMX19_03214at 513.169 kb on + strand, within MPMX19_03214at 513.170 kb on - strand, within MPMX19_03214at 513.170 kb on - strand, within MPMX19_03214at 513.170 kb on - strand, within MPMX19_03214at 513.224 kb on + strand, within MPMX19_03214at 513.224 kb on + strand, within MPMX19_03214at 513.224 kb on + strand, within MPMX19_03214at 513.224 kb on + strand, within MPMX19_03214at 513.224 kb on + strand, within MPMX19_03214at 513.224 kb on + strand, within MPMX19_03214at 513.224 kb on + strand, within MPMX19_03214at 513.224 kb on + strand, within MPMX19_03214at 513.224 kb on + strand, within MPMX19_03214at 513.224 kb on + strand, within MPMX19_03214at 513.225 kb on - strand, within MPMX19_03214at 513.225 kb on - strand, within MPMX19_03214at 513.225 kb on - strand, within MPMX19_03214at 513.225 kb on - strand, within MPMX19_03214at 513.225 kb on - strand, within MPMX19_03214at 513.225 kb on - strand, within MPMX19_03214at 513.225 kb on - strand, within MPMX19_03214at 513.226 kb on + strand, within MPMX19_03214at 513.226 kb on + strand, within MPMX19_03214at 513.226 kb on + strand, within MPMX19_03214at 513.226 kb on + strand, within MPMX19_03214at 513.226 kb on + strand, within MPMX19_03214at 513.226 kb on + strand, within MPMX19_03214at 513.226 kb on + strand, within MPMX19_03214at 513.226 kb on + strand, within MPMX19_03214at 513.227 kb on - strand, within MPMX19_03214at 513.227 kb on - strand, within MPMX19_03214at 513.227 kb on - strand, within MPMX19_03214at 513.227 kb on - strand, within MPMX19_03214at 513.227 kb on - strand, within MPMX19_03214at 513.227 kb on - strand, within MPMX19_03214at 513.227 kb on - strand, within MPMX19_03214at 513.227 kb on - strand, within MPMX19_03214at 513.227 kb on - strand, within MPMX19_03214at 513.227 kb on - strand, within MPMX19_03214at 513.227 kb on - strand, within MPMX19_03214at 513.227 kb on - strand, within MPMX19_03214at 513.516 kb on + strand, within MPMX19_03214at 513.516 kb on + strand, within MPMX19_03214at 513.516 kb on + strand, within MPMX19_03214at 513.516 kb on + strand, within MPMX19_03214at 513.516 kb on + strand, within MPMX19_03214at 513.516 kb on + strand, within MPMX19_03214at 513.516 kb on + strand, within MPMX19_03214at 513.516 kb on + strand, within MPMX19_03214at 513.517 kb on - strand, within MPMX19_03214at 513.517 kb on - strand, within MPMX19_03214at 513.517 kb on - strand, within MPMX19_03214at 513.517 kb on - strand, within MPMX19_03214at 513.517 kb on - strand, within MPMX19_03214at 513.517 kb on - strand, within MPMX19_03214at 513.517 kb on - strand, within MPMX19_03214at 513.517 kb on - strand, within MPMX19_03214at 513.614 kb on + strand, within MPMX19_03214at 513.614 kb on + strand, within MPMX19_03214at 513.614 kb on + strand, within MPMX19_03214at 513.614 kb on + strand, within MPMX19_03214at 513.614 kb on + strand, within MPMX19_03214at 513.614 kb on + strand, within MPMX19_03214at 513.614 kb on + strand, within MPMX19_03214at 513.615 kb on - strand, within MPMX19_03214at 513.615 kb on - strand, within MPMX19_03214at 513.615 kb on - strand, within MPMX19_03214at 513.615 kb on - strand, within MPMX19_03214at 513.615 kb on - strand, within MPMX19_03214

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
511,205 - MPMX19_03211 0.68 -0.9
511,246 + MPMX19_03211 0.72 -0.5
511,247 - MPMX19_03211 0.72 -0.9
511,247 - MPMX19_03211 0.72 -1.1
511,334 - MPMX19_03211 0.79 -1.0
511,334 - MPMX19_03211 0.79 -1.9
511,334 - MPMX19_03211 0.79 -0.2
511,334 - MPMX19_03211 0.79 -1.1
511,334 - MPMX19_03211 0.79 -0.9
511,334 - MPMX19_03211 0.79 -1.2
511,334 - MPMX19_03211 0.79 +1.1
511,372 + MPMX19_03211 0.82 -0.3
511,372 + MPMX19_03211 0.82 -1.4
511,372 + MPMX19_03211 0.82 -0.6
511,373 - MPMX19_03211 0.82 -1.9
511,373 - MPMX19_03211 0.82 +0.1
511,459 + MPMX19_03211 0.88 -0.6
511,507 + -1.4
511,508 - -0.4
511,620 - -0.0
511,622 - +1.1
511,622 - -1.4
511,794 - MPMX19_03212 0.36 -0.5
511,813 + MPMX19_03212 0.40 -1.1
511,813 + MPMX19_03212 0.40 -0.7
511,813 + MPMX19_03212 0.40 +0.5
511,813 + MPMX19_03212 0.40 -1.4
511,813 + MPMX19_03212 0.40 -1.4
511,814 - MPMX19_03212 0.41 -0.1
512,003 + MPMX19_03212 0.83 -0.2
512,003 + MPMX19_03212 0.83 -0.7
512,003 + MPMX19_03212 0.83 -1.8
512,004 - MPMX19_03212 0.83 -0.3
512,004 - MPMX19_03212 0.83 -0.7
512,324 + MPMX19_03213 0.31 -1.7
512,324 + MPMX19_03213 0.31 +1.4
512,324 + MPMX19_03213 0.31 -1.0
512,325 - MPMX19_03213 0.32 +0.8
512,393 - MPMX19_03213 0.46 +0.7
512,468 + MPMX19_03213 0.61 -0.5
512,468 + MPMX19_03213 0.61 -0.7
512,718 + -0.5
512,718 + -0.4
512,718 + -0.0
512,718 + +1.7
512,718 + -0.2
512,718 + -0.4
512,718 + +0.1
512,718 + -0.1
512,718 + -1.6
512,718 + -0.3
512,718 + -1.3
512,718 + -0.9
512,718 + -1.8
512,719 - +0.7
512,719 - -1.0
512,719 - -0.5
512,719 - -0.4
512,719 - -2.4
512,719 - -0.5
512,719 - -0.9
512,719 - -0.2
512,719 - +0.3
512,719 - -0.5
512,719 - -0.1
512,719 - -0.0
512,719 - +0.6
512,719 - +1.1
512,719 - +0.5
512,719 - -1.5
512,719 - -0.8
512,804 + -0.4
512,804 + -1.1
512,805 - -1.9
512,805 - +0.8
512,805 - -0.7
512,805 - -0.3
512,805 - -0.7
512,915 + MPMX19_03214 0.16 -0.8
512,915 + MPMX19_03214 0.16 -1.4
512,915 + MPMX19_03214 0.16 -0.4
512,916 - MPMX19_03214 0.17 -0.1
512,916 - MPMX19_03214 0.17 -2.1
512,916 - MPMX19_03214 0.17 -1.6
512,916 - MPMX19_03214 0.17 -0.7
512,928 + MPMX19_03214 0.17 -0.5
512,928 + MPMX19_03214 0.17 +0.2
512,928 + MPMX19_03214 0.17 -2.2
512,928 + MPMX19_03214 0.17 +0.6
512,928 + MPMX19_03214 0.17 -0.2
512,928 + MPMX19_03214 0.17 -1.2
512,929 - MPMX19_03214 0.17 -2.1
512,929 - MPMX19_03214 0.17 -0.7
512,929 - MPMX19_03214 0.17 +0.1
512,929 - MPMX19_03214 0.17 -2.7
512,929 - MPMX19_03214 0.17 -2.1
512,929 - MPMX19_03214 0.17 -0.5
512,929 - MPMX19_03214 0.17 -0.7
512,929 - MPMX19_03214 0.17 -1.1
512,929 - MPMX19_03214 0.17 +0.1
512,929 - MPMX19_03214 0.17 -0.4
513,025 + MPMX19_03214 0.24 -1.0
513,025 + MPMX19_03214 0.24 +1.1
513,026 - MPMX19_03214 0.24 -1.2
513,026 - MPMX19_03214 0.24 -0.9
513,026 - MPMX19_03214 0.24 -1.5
513,026 - MPMX19_03214 0.24 -1.1
513,026 - MPMX19_03214 0.24 +0.9
513,026 - MPMX19_03214 0.24 -1.0
513,044 + MPMX19_03214 0.25 -1.1
513,044 + MPMX19_03214 0.25 -1.5
513,044 + MPMX19_03214 0.25 -1.8
513,044 + MPMX19_03214 0.25 -1.3
513,044 + MPMX19_03214 0.25 -1.4
513,044 + MPMX19_03214 0.25 -0.6
513,044 + MPMX19_03214 0.25 -0.9
513,044 + MPMX19_03214 0.25 +0.4
513,044 + MPMX19_03214 0.25 +1.8
513,045 - MPMX19_03214 0.25 -0.2
513,045 - MPMX19_03214 0.25 -1.0
513,045 - MPMX19_03214 0.25 -1.8
513,045 - MPMX19_03214 0.25 -1.5
513,045 - MPMX19_03214 0.25 -0.9
513,045 - MPMX19_03214 0.25 +0.4
513,045 - MPMX19_03214 0.25 -0.6
513,045 - MPMX19_03214 0.25 -0.0
513,045 - MPMX19_03214 0.25 +0.4
513,045 - MPMX19_03214 0.25 -0.1
513,045 - MPMX19_03214 0.25 +0.3
513,122 + MPMX19_03214 0.31 -0.2
513,122 + MPMX19_03214 0.31 -0.2
513,122 + MPMX19_03214 0.31 +1.1
513,122 + MPMX19_03214 0.31 -0.1
513,122 + MPMX19_03214 0.31 -1.5
513,122 + MPMX19_03214 0.31 +0.2
513,122 + MPMX19_03214 0.31 -1.2
513,122 + MPMX19_03214 0.31 -1.6
513,122 + MPMX19_03214 0.31 -0.2
513,122 + MPMX19_03214 0.31 +0.8
513,122 + MPMX19_03214 0.31 +0.5
513,123 - MPMX19_03214 0.31 +0.5
513,123 - MPMX19_03214 0.31 -0.1
513,123 - MPMX19_03214 0.31 -0.4
513,123 - MPMX19_03214 0.31 -0.4
513,123 - MPMX19_03214 0.31 -1.2
513,123 - MPMX19_03214 0.31 -0.2
513,123 - MPMX19_03214 0.31 +0.1
513,123 - MPMX19_03214 0.31 -0.5
513,123 - MPMX19_03214 0.31 +0.9
513,123 - MPMX19_03214 0.31 -0.9
513,123 - MPMX19_03214 0.31 -1.8
513,123 - MPMX19_03214 0.31 -1.1
513,123 - MPMX19_03214 0.31 +1.1
513,169 + MPMX19_03214 0.34 -0.8
513,169 + MPMX19_03214 0.34 +2.1
513,169 + MPMX19_03214 0.34 +1.5
513,169 + MPMX19_03214 0.34 +1.7
513,169 + MPMX19_03214 0.34 -0.8
513,169 + MPMX19_03214 0.34 -1.7
513,170 - MPMX19_03214 0.34 +0.1
513,170 - MPMX19_03214 0.34 -0.7
513,170 - MPMX19_03214 0.34 -0.9
513,224 + MPMX19_03214 0.38 +0.1
513,224 + MPMX19_03214 0.38 -0.4
513,224 + MPMX19_03214 0.38 -0.3
513,224 + MPMX19_03214 0.38 +0.9
513,224 + MPMX19_03214 0.38 -1.2
513,224 + MPMX19_03214 0.38 -0.4
513,224 + MPMX19_03214 0.38 -1.0
513,224 + MPMX19_03214 0.38 -0.5
513,224 + MPMX19_03214 0.38 -1.1
513,224 + MPMX19_03214 0.38 -0.6
513,225 - MPMX19_03214 0.38 +0.3
513,225 - MPMX19_03214 0.38 +0.2
513,225 - MPMX19_03214 0.38 -1.0
513,225 - MPMX19_03214 0.38 +0.3
513,225 - MPMX19_03214 0.38 +0.8
513,225 - MPMX19_03214 0.38 -1.3
513,225 - MPMX19_03214 0.38 -0.8
513,226 + MPMX19_03214 0.38 -0.7
513,226 + MPMX19_03214 0.38 +0.3
513,226 + MPMX19_03214 0.38 +0.5
513,226 + MPMX19_03214 0.38 +0.3
513,226 + MPMX19_03214 0.38 -0.7
513,226 + MPMX19_03214 0.38 -0.1
513,226 + MPMX19_03214 0.38 -0.9
513,226 + MPMX19_03214 0.38 -2.0
513,227 - MPMX19_03214 0.38 -0.2
513,227 - MPMX19_03214 0.38 +1.1
513,227 - MPMX19_03214 0.38 -1.2
513,227 - MPMX19_03214 0.38 +0.3
513,227 - MPMX19_03214 0.38 -0.9
513,227 - MPMX19_03214 0.38 +0.3
513,227 - MPMX19_03214 0.38 -1.3
513,227 - MPMX19_03214 0.38 -0.7
513,227 - MPMX19_03214 0.38 -1.2
513,227 - MPMX19_03214 0.38 +0.1
513,227 - MPMX19_03214 0.38 -0.7
513,227 - MPMX19_03214 0.38 -1.5
513,516 + MPMX19_03214 0.58 -2.4
513,516 + MPMX19_03214 0.58 -0.4
513,516 + MPMX19_03214 0.58 +0.1
513,516 + MPMX19_03214 0.58 +0.1
513,516 + MPMX19_03214 0.58 +0.2
513,516 + MPMX19_03214 0.58 -1.0
513,516 + MPMX19_03214 0.58 -0.1
513,516 + MPMX19_03214 0.58 -0.4
513,517 - MPMX19_03214 0.58 -0.4
513,517 - MPMX19_03214 0.58 -1.5
513,517 - MPMX19_03214 0.58 -1.1
513,517 - MPMX19_03214 0.58 +0.8
513,517 - MPMX19_03214 0.58 -0.7
513,517 - MPMX19_03214 0.58 +0.7
513,517 - MPMX19_03214 0.58 -0.5
513,517 - MPMX19_03214 0.58 +0.4
513,614 + MPMX19_03214 0.65 -1.3
513,614 + MPMX19_03214 0.65 +0.1
513,614 + MPMX19_03214 0.65 -1.4
513,614 + MPMX19_03214 0.65 -1.0
513,614 + MPMX19_03214 0.65 -1.1
513,614 + MPMX19_03214 0.65 +0.1
513,614 + MPMX19_03214 0.65 -1.1
513,615 - MPMX19_03214 0.65 +0.8
513,615 - MPMX19_03214 0.65 -0.1
513,615 - MPMX19_03214 0.65 +0.8
513,615 - MPMX19_03214 0.65 +0.9
513,615 - MPMX19_03214 0.65 -1.2

Or see this region's nucleotide sequence