Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03206

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03205 and MPMX19_03206 are separated by 272 nucleotidesMPMX19_03206 and MPMX19_03207 are separated by 104 nucleotides MPMX19_03205: MPMX19_03205 - IS5 family transposase ISAzs10, at 503,489 to 504,565 _03205 MPMX19_03206: MPMX19_03206 - HTH-type transcriptional activator RhaS, at 504,838 to 505,716 _03206 MPMX19_03207: MPMX19_03207 - hypothetical protein, at 505,821 to 506,690 _03207 Position (kb) 504 505 506Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 504.087 kb on - strand, within MPMX19_03205at 504.525 kb on - strandat 504.525 kb on - strandat 504.525 kb on - strandat 504.525 kb on - strandat 504.525 kb on - strandat 504.563 kb on + strandat 504.563 kb on + strandat 504.563 kb on + strandat 504.564 kb on - strandat 504.564 kb on - strandat 504.564 kb on - strandat 504.564 kb on - strandat 504.691 kb on + strandat 504.691 kb on + strandat 504.691 kb on + strandat 504.691 kb on + strandat 504.691 kb on + strandat 504.742 kb on + strandat 504.743 kb on - strandat 504.912 kb on + strandat 504.912 kb on + strandat 504.912 kb on + strandat 504.912 kb on + strandat 504.912 kb on + strandat 504.912 kb on + strandat 504.912 kb on + strandat 504.912 kb on + strandat 504.912 kb on + strandat 504.912 kb on + strandat 504.912 kb on + strandat 504.912 kb on + strandat 504.913 kb on - strandat 504.913 kb on - strandat 504.913 kb on - strandat 504.913 kb on - strandat 504.913 kb on - strandat 504.913 kb on - strandat 504.913 kb on - strandat 504.913 kb on - strandat 504.913 kb on - strandat 504.913 kb on - strandat 504.913 kb on - strandat 504.913 kb on - strandat 505.075 kb on + strand, within MPMX19_03206at 505.075 kb on + strand, within MPMX19_03206at 505.130 kb on + strand, within MPMX19_03206at 505.130 kb on + strand, within MPMX19_03206at 505.130 kb on + strand, within MPMX19_03206at 505.130 kb on + strand, within MPMX19_03206at 505.130 kb on + strand, within MPMX19_03206at 505.131 kb on - strand, within MPMX19_03206at 505.131 kb on - strand, within MPMX19_03206at 505.131 kb on - strand, within MPMX19_03206at 505.239 kb on - strand, within MPMX19_03206at 505.247 kb on + strand, within MPMX19_03206at 505.247 kb on + strand, within MPMX19_03206at 505.248 kb on - strand, within MPMX19_03206at 505.248 kb on - strand, within MPMX19_03206at 505.406 kb on + strand, within MPMX19_03206at 505.469 kb on + strand, within MPMX19_03206at 505.469 kb on + strand, within MPMX19_03206at 505.469 kb on + strand, within MPMX19_03206at 505.469 kb on + strand, within MPMX19_03206at 505.469 kb on + strand, within MPMX19_03206at 505.469 kb on + strand, within MPMX19_03206at 505.469 kb on + strand, within MPMX19_03206at 505.469 kb on + strand, within MPMX19_03206at 505.469 kb on + strand, within MPMX19_03206at 505.470 kb on - strand, within MPMX19_03206at 505.470 kb on - strand, within MPMX19_03206at 505.470 kb on - strand, within MPMX19_03206at 505.470 kb on - strand, within MPMX19_03206at 505.470 kb on - strand, within MPMX19_03206at 505.470 kb on - strand, within MPMX19_03206at 505.470 kb on - strand, within MPMX19_03206at 505.470 kb on - strand, within MPMX19_03206at 505.470 kb on - strand, within MPMX19_03206at 505.470 kb on - strand, within MPMX19_03206at 505.470 kb on - strand, within MPMX19_03206at 505.470 kb on - strand, within MPMX19_03206at 505.470 kb on - strand, within MPMX19_03206at 505.470 kb on - strand, within MPMX19_03206at 505.470 kb on - strand, within MPMX19_03206at 505.527 kb on + strand, within MPMX19_03206at 505.528 kb on - strand, within MPMX19_03206at 505.591 kb on + strand, within MPMX19_03206at 505.591 kb on + strand, within MPMX19_03206at 505.591 kb on + strand, within MPMX19_03206at 505.591 kb on + strand, within MPMX19_03206at 505.591 kb on + strand, within MPMX19_03206at 505.592 kb on - strand, within MPMX19_03206at 505.592 kb on - strand, within MPMX19_03206at 505.592 kb on - strand, within MPMX19_03206at 505.592 kb on - strand, within MPMX19_03206at 505.607 kb on + strand, within MPMX19_03206at 505.608 kb on - strand, within MPMX19_03206at 505.608 kb on - strand, within MPMX19_03206at 505.608 kb on - strand, within MPMX19_03206at 505.653 kb on + strandat 505.654 kb on - strandat 505.654 kb on - strandat 505.654 kb on - strandat 505.654 kb on - strandat 505.654 kb on - strandat 505.654 kb on - strandat 505.677 kb on + strandat 505.678 kb on - strandat 505.678 kb on - strandat 505.678 kb on - strandat 505.679 kb on + strandat 505.679 kb on + strandat 505.679 kb on + strandat 505.680 kb on - strandat 505.680 kb on - strandat 505.680 kb on - strandat 505.680 kb on - strandat 505.690 kb on + strandat 505.691 kb on - strandat 505.729 kb on + strandat 505.750 kb on - strandat 505.754 kb on - strandat 505.754 kb on - strandat 505.779 kb on + strandat 505.779 kb on + strandat 505.779 kb on + strandat 505.780 kb on - strandat 505.780 kb on - strandat 505.785 kb on + strandat 505.785 kb on + strandat 505.785 kb on + strandat 505.785 kb on + strandat 505.785 kb on + strandat 505.785 kb on + strandat 505.785 kb on + strandat 505.786 kb on - strandat 505.786 kb on - strandat 505.786 kb on - strandat 505.786 kb on - strandat 505.786 kb on - strandat 505.786 kb on - strandat 505.786 kb on - strandat 505.786 kb on - strandat 505.786 kb on - strandat 505.789 kb on + strandat 505.789 kb on + strandat 505.789 kb on + strandat 505.789 kb on + strandat 505.790 kb on - strandat 505.795 kb on + strandat 505.795 kb on + strandat 505.795 kb on + strandat 505.795 kb on + strandat 505.895 kb on + strandat 505.997 kb on - strand, within MPMX19_03207at 505.997 kb on - strand, within MPMX19_03207at 506.110 kb on + strand, within MPMX19_03207at 506.110 kb on + strand, within MPMX19_03207at 506.111 kb on - strand, within MPMX19_03207at 506.111 kb on - strand, within MPMX19_03207at 506.111 kb on - strand, within MPMX19_03207at 506.111 kb on - strand, within MPMX19_03207at 506.111 kb on - strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.125 kb on + strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.126 kb on - strand, within MPMX19_03207at 506.159 kb on + strand, within MPMX19_03207at 506.159 kb on + strand, within MPMX19_03207at 506.249 kb on + strand, within MPMX19_03207at 506.249 kb on + strand, within MPMX19_03207at 506.249 kb on + strand, within MPMX19_03207at 506.249 kb on + strand, within MPMX19_03207at 506.249 kb on + strand, within MPMX19_03207at 506.249 kb on + strand, within MPMX19_03207at 506.249 kb on + strand, within MPMX19_03207at 506.250 kb on - strand, within MPMX19_03207at 506.250 kb on - strand, within MPMX19_03207at 506.250 kb on - strand, within MPMX19_03207at 506.250 kb on - strand, within MPMX19_03207at 506.250 kb on - strand, within MPMX19_03207at 506.250 kb on - strand, within MPMX19_03207at 506.253 kb on + strand, within MPMX19_03207at 506.253 kb on + strand, within MPMX19_03207at 506.253 kb on + strand, within MPMX19_03207at 506.254 kb on - strand, within MPMX19_03207at 506.254 kb on - strand, within MPMX19_03207at 506.254 kb on - strand, within MPMX19_03207at 506.254 kb on - strand, within MPMX19_03207at 506.392 kb on + strand, within MPMX19_03207at 506.392 kb on + strand, within MPMX19_03207at 506.392 kb on + strand, within MPMX19_03207at 506.392 kb on + strand, within MPMX19_03207at 506.392 kb on + strand, within MPMX19_03207at 506.392 kb on + strand, within MPMX19_03207at 506.393 kb on - strand, within MPMX19_03207at 506.393 kb on - strand, within MPMX19_03207at 506.393 kb on - strand, within MPMX19_03207at 506.393 kb on - strand, within MPMX19_03207at 506.393 kb on - strand, within MPMX19_03207at 506.393 kb on - strand, within MPMX19_03207at 506.393 kb on - strand, within MPMX19_03207at 506.393 kb on - strand, within MPMX19_03207at 506.414 kb on - strand, within MPMX19_03207at 506.422 kb on - strand, within MPMX19_03207

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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504,087 - MPMX19_03205 0.56 -1.2
504,525 - -0.3
504,525 - -1.0
504,525 - -0.3
504,525 - +0.4
504,525 - -2.7
504,563 + -1.2
504,563 + -1.1
504,563 + +0.5
504,564 - -0.6
504,564 - -1.8
504,564 - -2.3
504,564 - -0.1
504,691 + -1.1
504,691 + -1.7
504,691 + -1.2
504,691 + -1.9
504,691 + -2.6
504,742 + -0.8
504,743 - -1.4
504,912 + -1.5
504,912 + -0.5
504,912 + -0.7
504,912 + +0.5
504,912 + -0.2
504,912 + -1.6
504,912 + +0.2
504,912 + -1.9
504,912 + -1.9
504,912 + -0.2
504,912 + -0.1
504,912 + -1.1
504,913 - +0.3
504,913 - -0.5
504,913 - -1.6
504,913 - -0.3
504,913 - -1.3
504,913 - -0.2
504,913 - -1.1
504,913 - -1.6
504,913 - -0.9
504,913 - -1.1
504,913 - -3.6
504,913 - -1.4
505,075 + MPMX19_03206 0.27 -2.0
505,075 + MPMX19_03206 0.27 -1.2
505,130 + MPMX19_03206 0.33 +0.5
505,130 + MPMX19_03206 0.33 +0.3
505,130 + MPMX19_03206 0.33 -0.9
505,130 + MPMX19_03206 0.33 +2.1
505,130 + MPMX19_03206 0.33 -1.4
505,131 - MPMX19_03206 0.33 -0.9
505,131 - MPMX19_03206 0.33 -1.2
505,131 - MPMX19_03206 0.33 -1.3
505,239 - MPMX19_03206 0.46 -1.2
505,247 + MPMX19_03206 0.47 -1.8
505,247 + MPMX19_03206 0.47 -0.9
505,248 - MPMX19_03206 0.47 +0.1
505,248 - MPMX19_03206 0.47 -0.2
505,406 + MPMX19_03206 0.65 -0.1
505,469 + MPMX19_03206 0.72 -0.7
505,469 + MPMX19_03206 0.72 -2.2
505,469 + MPMX19_03206 0.72 -0.4
505,469 + MPMX19_03206 0.72 -0.2
505,469 + MPMX19_03206 0.72 -1.5
505,469 + MPMX19_03206 0.72 -0.1
505,469 + MPMX19_03206 0.72 +0.8
505,469 + MPMX19_03206 0.72 -0.2
505,469 + MPMX19_03206 0.72 -1.9
505,470 - MPMX19_03206 0.72 -0.5
505,470 - MPMX19_03206 0.72 +0.1
505,470 - MPMX19_03206 0.72 -1.7
505,470 - MPMX19_03206 0.72 +1.4
505,470 - MPMX19_03206 0.72 -0.2
505,470 - MPMX19_03206 0.72 +2.5
505,470 - MPMX19_03206 0.72 -0.6
505,470 - MPMX19_03206 0.72 -1.7
505,470 - MPMX19_03206 0.72 -0.9
505,470 - MPMX19_03206 0.72 -2.3
505,470 - MPMX19_03206 0.72 -0.7
505,470 - MPMX19_03206 0.72 -0.1
505,470 - MPMX19_03206 0.72 +1.1
505,470 - MPMX19_03206 0.72 -0.2
505,470 - MPMX19_03206 0.72 +0.3
505,527 + MPMX19_03206 0.78 -0.5
505,528 - MPMX19_03206 0.78 +1.8
505,591 + MPMX19_03206 0.86 -0.5
505,591 + MPMX19_03206 0.86 +0.7
505,591 + MPMX19_03206 0.86 +1.7
505,591 + MPMX19_03206 0.86 +0.1
505,591 + MPMX19_03206 0.86 +0.6
505,592 - MPMX19_03206 0.86 -1.1
505,592 - MPMX19_03206 0.86 -0.5
505,592 - MPMX19_03206 0.86 -0.7
505,592 - MPMX19_03206 0.86 -0.4
505,607 + MPMX19_03206 0.87 -0.2
505,608 - MPMX19_03206 0.88 +0.3
505,608 - MPMX19_03206 0.88 -1.8
505,608 - MPMX19_03206 0.88 +0.5
505,653 + -0.5
505,654 - +0.4
505,654 - -0.2
505,654 - -1.3
505,654 - -1.5
505,654 - -1.2
505,654 - -1.2
505,677 + +1.5
505,678 - -0.5
505,678 - -0.5
505,678 - +1.1
505,679 + -0.0
505,679 + -1.7
505,679 + -1.6
505,680 - +0.2
505,680 - -0.5
505,680 - -0.6
505,680 - -0.3
505,690 + -0.9
505,691 - -0.6
505,729 + +0.9
505,750 - +0.1
505,754 - -0.6
505,754 - -1.4
505,779 + +0.1
505,779 + -1.9
505,779 + +0.5
505,780 - -1.2
505,780 - -0.1
505,785 + -2.0
505,785 + -2.3
505,785 + -0.2
505,785 + +0.0
505,785 + -0.4
505,785 + +2.1
505,785 + -1.1
505,786 - -0.9
505,786 - -0.7
505,786 - -0.3
505,786 - -0.9
505,786 - -0.9
505,786 - +0.4
505,786 - -0.5
505,786 - +0.1
505,786 - -1.3
505,789 + -0.5
505,789 + +0.1
505,789 + +0.4
505,789 + +0.7
505,790 - -1.2
505,795 + -1.5
505,795 + -0.1
505,795 + -0.2
505,795 + -0.2
505,895 + -0.6
505,997 - MPMX19_03207 0.20 -0.5
505,997 - MPMX19_03207 0.20 -0.9
506,110 + MPMX19_03207 0.33 +0.1
506,110 + MPMX19_03207 0.33 -0.7
506,111 - MPMX19_03207 0.33 +1.2
506,111 - MPMX19_03207 0.33 -2.9
506,111 - MPMX19_03207 0.33 -1.1
506,111 - MPMX19_03207 0.33 +1.4
506,111 - MPMX19_03207 0.33 -0.1
506,125 + MPMX19_03207 0.35 -2.9
506,125 + MPMX19_03207 0.35 -1.1
506,125 + MPMX19_03207 0.35 -0.7
506,125 + MPMX19_03207 0.35 -0.1
506,125 + MPMX19_03207 0.35 +0.5
506,125 + MPMX19_03207 0.35 +0.4
506,125 + MPMX19_03207 0.35 +0.5
506,125 + MPMX19_03207 0.35 -1.6
506,125 + MPMX19_03207 0.35 -1.0
506,125 + MPMX19_03207 0.35 -1.1
506,125 + MPMX19_03207 0.35 +0.4
506,125 + MPMX19_03207 0.35 -1.0
506,125 + MPMX19_03207 0.35 -2.3
506,125 + MPMX19_03207 0.35 +0.3
506,125 + MPMX19_03207 0.35 +0.5
506,125 + MPMX19_03207 0.35 -0.2
506,125 + MPMX19_03207 0.35 +0.0
506,125 + MPMX19_03207 0.35 -2.6
506,125 + MPMX19_03207 0.35 +0.8
506,125 + MPMX19_03207 0.35 -1.2
506,125 + MPMX19_03207 0.35 -0.6
506,125 + MPMX19_03207 0.35 +0.7
506,125 + MPMX19_03207 0.35 -1.4
506,126 - MPMX19_03207 0.35 -2.6
506,126 - MPMX19_03207 0.35 -0.9
506,126 - MPMX19_03207 0.35 -0.0
506,126 - MPMX19_03207 0.35 -1.2
506,126 - MPMX19_03207 0.35 -1.3
506,126 - MPMX19_03207 0.35 +0.2
506,126 - MPMX19_03207 0.35 -0.9
506,126 - MPMX19_03207 0.35 +0.5
506,126 - MPMX19_03207 0.35 -0.5
506,126 - MPMX19_03207 0.35 -0.2
506,126 - MPMX19_03207 0.35 +1.2
506,126 - MPMX19_03207 0.35 -1.6
506,126 - MPMX19_03207 0.35 -0.5
506,126 - MPMX19_03207 0.35 -0.5
506,126 - MPMX19_03207 0.35 -1.5
506,126 - MPMX19_03207 0.35 -0.9
506,126 - MPMX19_03207 0.35 -0.1
506,126 - MPMX19_03207 0.35 -0.4
506,159 + MPMX19_03207 0.39 -0.2
506,159 + MPMX19_03207 0.39 -1.0
506,249 + MPMX19_03207 0.49 -1.1
506,249 + MPMX19_03207 0.49 +0.4
506,249 + MPMX19_03207 0.49 +0.5
506,249 + MPMX19_03207 0.49 -0.5
506,249 + MPMX19_03207 0.49 -0.2
506,249 + MPMX19_03207 0.49 -0.2
506,249 + MPMX19_03207 0.49 -0.2
506,250 - MPMX19_03207 0.49 -1.1
506,250 - MPMX19_03207 0.49 -0.9
506,250 - MPMX19_03207 0.49 +0.1
506,250 - MPMX19_03207 0.49 +0.5
506,250 - MPMX19_03207 0.49 +0.1
506,250 - MPMX19_03207 0.49 +0.5
506,253 + MPMX19_03207 0.50 -0.8
506,253 + MPMX19_03207 0.50 -2.5
506,253 + MPMX19_03207 0.50 -1.6
506,254 - MPMX19_03207 0.50 -1.4
506,254 - MPMX19_03207 0.50 +0.8
506,254 - MPMX19_03207 0.50 +0.1
506,254 - MPMX19_03207 0.50 -0.7
506,392 + MPMX19_03207 0.66 -2.3
506,392 + MPMX19_03207 0.66 +0.5
506,392 + MPMX19_03207 0.66 -0.9
506,392 + MPMX19_03207 0.66 -1.1
506,392 + MPMX19_03207 0.66 -1.2
506,392 + MPMX19_03207 0.66 -0.7
506,393 - MPMX19_03207 0.66 -1.9
506,393 - MPMX19_03207 0.66 -0.7
506,393 - MPMX19_03207 0.66 -2.0
506,393 - MPMX19_03207 0.66 -0.7
506,393 - MPMX19_03207 0.66 -0.0
506,393 - MPMX19_03207 0.66 -3.1
506,393 - MPMX19_03207 0.66 -1.5
506,393 - MPMX19_03207 0.66 -0.8
506,414 - MPMX19_03207 0.68 +0.3
506,422 - MPMX19_03207 0.69 -0.6

Or see this region's nucleotide sequence