Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03204 and MPMX19_03205 are separated by 228 nucleotides MPMX19_03205 and MPMX19_03206 are separated by 272 nucleotides
MPMX19_03204: MPMX19_03204 - IS110 family transposase ISMno25, at 502,085 to 503,260
_03204
MPMX19_03205: MPMX19_03205 - IS5 family transposase ISAzs10, at 503,489 to 504,565
_03205
MPMX19_03206: MPMX19_03206 - HTH-type transcriptional activator RhaS, at 504,838 to 505,716
_03206
Position (kb) 503
504
505 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.546 kb on + strand, within MPMX19_03204 at 502.546 kb on + strand, within MPMX19_03204 at 502.546 kb on + strand, within MPMX19_03204 at 502.547 kb on - strand, within MPMX19_03204 at 502.547 kb on - strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.599 kb on - strand, within MPMX19_03204 at 502.599 kb on - strand, within MPMX19_03204 at 502.599 kb on - strand, within MPMX19_03204 at 502.599 kb on - strand, within MPMX19_03204 at 502.600 kb on + strand, within MPMX19_03204 at 502.600 kb on + strand, within MPMX19_03204 at 502.601 kb on - strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.659 kb on - strand, within MPMX19_03204 at 502.659 kb on - strand, within MPMX19_03204 at 502.659 kb on - strand, within MPMX19_03204 at 502.659 kb on - strand, within MPMX19_03204 at 502.745 kb on + strand, within MPMX19_03204 at 502.894 kb on + strand, within MPMX19_03204 at 502.940 kb on + strand, within MPMX19_03204 at 502.940 kb on + strand, within MPMX19_03204 at 502.941 kb on - strand, within MPMX19_03204 at 503.025 kb on + strand, within MPMX19_03204 at 503.025 kb on + strand, within MPMX19_03204 at 503.026 kb on - strand, within MPMX19_03204 at 503.026 kb on - strand, within MPMX19_03204 at 503.026 kb on - strand, within MPMX19_03204 at 503.026 kb on - strand, within MPMX19_03204 at 503.154 kb on - strand at 503.154 kb on - strand at 503.154 kb on - strand at 503.154 kb on - strand at 503.154 kb on - strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.319 kb on - strand at 503.319 kb on - strand at 503.319 kb on - strand at 503.368 kb on - strand at 503.406 kb on + strand at 503.406 kb on + strand at 503.406 kb on + strand at 503.406 kb on + strand at 503.407 kb on - strand at 503.407 kb on - strand at 503.427 kb on + strand at 503.427 kb on + strand at 503.427 kb on + strand at 503.427 kb on + strand at 503.428 kb on - strand at 503.428 kb on - strand at 503.428 kb on - strand at 503.428 kb on - strand at 503.428 kb on - strand at 503.428 kb on - strand at 503.470 kb on + strand at 503.470 kb on + strand at 503.470 kb on + strand at 503.471 kb on - strand at 503.471 kb on - strand at 503.471 kb on - strand at 503.528 kb on + strand at 503.528 kb on + strand at 503.528 kb on + strand at 503.528 kb on + strand at 503.529 kb on - strand at 503.529 kb on - strand at 503.529 kb on - strand at 503.803 kb on + strand, within MPMX19_03205 at 504.087 kb on - strand, within MPMX19_03205 at 504.525 kb on - strand at 504.525 kb on - strand at 504.525 kb on - strand at 504.525 kb on - strand at 504.525 kb on - strand at 504.563 kb on + strand at 504.563 kb on + strand at 504.563 kb on + strand at 504.564 kb on - strand at 504.564 kb on - strand at 504.564 kb on - strand at 504.564 kb on - strand at 504.691 kb on + strand at 504.691 kb on + strand at 504.691 kb on + strand at 504.691 kb on + strand at 504.691 kb on + strand at 504.742 kb on + strand at 504.743 kb on - strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 505.075 kb on + strand, within MPMX19_03206 at 505.075 kb on + strand, within MPMX19_03206 at 505.130 kb on + strand, within MPMX19_03206 at 505.130 kb on + strand, within MPMX19_03206 at 505.130 kb on + strand, within MPMX19_03206 at 505.130 kb on + strand, within MPMX19_03206 at 505.130 kb on + strand, within MPMX19_03206 at 505.131 kb on - strand, within MPMX19_03206 at 505.131 kb on - strand, within MPMX19_03206 at 505.131 kb on - strand, within MPMX19_03206 at 505.239 kb on - strand, within MPMX19_03206 at 505.247 kb on + strand, within MPMX19_03206 at 505.247 kb on + strand, within MPMX19_03206 at 505.248 kb on - strand, within MPMX19_03206 at 505.248 kb on - strand, within MPMX19_03206 at 505.406 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.527 kb on + strand, within MPMX19_03206 at 505.528 kb on - strand, within MPMX19_03206
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 502,498 + MPMX19_03204 0.35 -0.6 502,498 + MPMX19_03204 0.35 -0.8 502,498 + MPMX19_03204 0.35 +0.2 502,498 + MPMX19_03204 0.35 +0.3 502,498 + MPMX19_03204 0.35 +0.3 502,498 + MPMX19_03204 0.35 -1.2 502,498 + MPMX19_03204 0.35 -1.5 502,498 + MPMX19_03204 0.35 -0.1 502,499 - MPMX19_03204 0.35 -1.5 502,499 - MPMX19_03204 0.35 -1.6 502,499 - MPMX19_03204 0.35 -0.6 502,499 - MPMX19_03204 0.35 +1.5 502,499 - MPMX19_03204 0.35 -2.2 502,499 - MPMX19_03204 0.35 -1.4 502,546 + MPMX19_03204 0.39 +0.3 502,546 + MPMX19_03204 0.39 -2.0 502,546 + MPMX19_03204 0.39 -0.3 502,547 - MPMX19_03204 0.39 -2.1 502,547 - MPMX19_03204 0.39 -1.8 502,598 + MPMX19_03204 0.44 -0.5 502,598 + MPMX19_03204 0.44 -1.6 502,598 + MPMX19_03204 0.44 +0.8 502,598 + MPMX19_03204 0.44 -1.1 502,598 + MPMX19_03204 0.44 -0.8 502,598 + MPMX19_03204 0.44 -1.7 502,599 - MPMX19_03204 0.44 -0.9 502,599 - MPMX19_03204 0.44 +0.3 502,599 - MPMX19_03204 0.44 -0.7 502,599 - MPMX19_03204 0.44 -1.3 502,600 + MPMX19_03204 0.44 -0.6 502,600 + MPMX19_03204 0.44 -0.9 502,601 - MPMX19_03204 0.44 -0.2 502,658 + MPMX19_03204 0.49 -0.4 502,658 + MPMX19_03204 0.49 -0.2 502,658 + MPMX19_03204 0.49 -0.5 502,658 + MPMX19_03204 0.49 -0.7 502,658 + MPMX19_03204 0.49 -0.2 502,658 + MPMX19_03204 0.49 -1.4 502,658 + MPMX19_03204 0.49 +0.6 502,659 - MPMX19_03204 0.49 -0.7 502,659 - MPMX19_03204 0.49 -2.1 502,659 - MPMX19_03204 0.49 -0.2 502,659 - MPMX19_03204 0.49 -0.4 502,745 + MPMX19_03204 0.56 -1.3 502,894 + MPMX19_03204 0.69 +0.5 502,940 + MPMX19_03204 0.73 -0.1 502,940 + MPMX19_03204 0.73 -0.2 502,941 - MPMX19_03204 0.73 -0.8 503,025 + MPMX19_03204 0.80 -1.5 503,025 + MPMX19_03204 0.80 -0.2 503,026 - MPMX19_03204 0.80 -0.6 503,026 - MPMX19_03204 0.80 -0.4 503,026 - MPMX19_03204 0.80 -1.1 503,026 - MPMX19_03204 0.80 -0.1 503,154 - -1.8 503,154 - +0.3 503,154 - -0.0 503,154 - -2.0 503,154 - +0.1 503,318 + +0.4 503,318 + +0.1 503,318 + -0.4 503,318 + +0.5 503,318 + -0.7 503,319 - -0.8 503,319 - -1.1 503,319 - +0.7 503,368 - -1.5 503,406 + -0.5 503,406 + -0.7 503,406 + +0.1 503,406 + -2.5 503,407 - +0.5 503,407 - -0.1 503,427 + -0.9 503,427 + -0.8 503,427 + -1.2 503,427 + -0.4 503,428 - +1.1 503,428 - -1.5 503,428 - +0.1 503,428 - -0.4 503,428 - -0.4 503,428 - -1.2 503,470 + -0.9 503,470 + -0.8 503,470 + -0.9 503,471 - -1.5 503,471 - -0.8 503,471 - -1.6 503,528 + +0.8 503,528 + -0.6 503,528 + -0.5 503,528 + +0.1 503,529 - -2.3 503,529 - -0.3 503,529 - -0.2 503,803 + MPMX19_03205 0.29 -1.4 504,087 - MPMX19_03205 0.56 -1.2 504,525 - -0.3 504,525 - -1.0 504,525 - -0.3 504,525 - +0.4 504,525 - -2.7 504,563 + -1.2 504,563 + -1.1 504,563 + +0.5 504,564 - -0.6 504,564 - -1.8 504,564 - -2.3 504,564 - -0.1 504,691 + -1.1 504,691 + -1.7 504,691 + -1.2 504,691 + -1.9 504,691 + -2.6 504,742 + -0.8 504,743 - -1.4 504,912 + -1.5 504,912 + -0.5 504,912 + -0.7 504,912 + +0.5 504,912 + -0.2 504,912 + -1.6 504,912 + +0.2 504,912 + -1.9 504,912 + -1.9 504,912 + -0.2 504,912 + -0.1 504,912 + -1.1 504,913 - +0.3 504,913 - -0.5 504,913 - -1.6 504,913 - -0.3 504,913 - -1.3 504,913 - -0.2 504,913 - -1.1 504,913 - -1.6 504,913 - -0.9 504,913 - -1.1 504,913 - -3.6 504,913 - -1.4 505,075 + MPMX19_03206 0.27 -2.0 505,075 + MPMX19_03206 0.27 -1.2 505,130 + MPMX19_03206 0.33 +0.5 505,130 + MPMX19_03206 0.33 +0.3 505,130 + MPMX19_03206 0.33 -0.9 505,130 + MPMX19_03206 0.33 +2.1 505,130 + MPMX19_03206 0.33 -1.4 505,131 - MPMX19_03206 0.33 -0.9 505,131 - MPMX19_03206 0.33 -1.2 505,131 - MPMX19_03206 0.33 -1.3 505,239 - MPMX19_03206 0.46 -1.2 505,247 + MPMX19_03206 0.47 -1.8 505,247 + MPMX19_03206 0.47 -0.9 505,248 - MPMX19_03206 0.47 +0.1 505,248 - MPMX19_03206 0.47 -0.2 505,406 + MPMX19_03206 0.65 -0.1 505,469 + MPMX19_03206 0.72 -0.7 505,469 + MPMX19_03206 0.72 -2.2 505,469 + MPMX19_03206 0.72 -0.4 505,469 + MPMX19_03206 0.72 -0.2 505,469 + MPMX19_03206 0.72 -1.5 505,469 + MPMX19_03206 0.72 -0.1 505,469 + MPMX19_03206 0.72 +0.8 505,469 + MPMX19_03206 0.72 -0.2 505,469 + MPMX19_03206 0.72 -1.9 505,470 - MPMX19_03206 0.72 -0.5 505,470 - MPMX19_03206 0.72 +0.1 505,470 - MPMX19_03206 0.72 -1.7 505,470 - MPMX19_03206 0.72 +1.4 505,470 - MPMX19_03206 0.72 -0.2 505,470 - MPMX19_03206 0.72 +2.5 505,470 - MPMX19_03206 0.72 -0.6 505,470 - MPMX19_03206 0.72 -1.7 505,470 - MPMX19_03206 0.72 -0.9 505,470 - MPMX19_03206 0.72 -2.3 505,470 - MPMX19_03206 0.72 -0.7 505,470 - MPMX19_03206 0.72 -0.1 505,470 - MPMX19_03206 0.72 +1.1 505,470 - MPMX19_03206 0.72 -0.2 505,470 - MPMX19_03206 0.72 +0.3 505,527 + MPMX19_03206 0.78 -0.5 505,528 - MPMX19_03206 0.78 +1.8
Or see this region's nucleotide sequence