Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03168 and MPMX19_03169 are separated by 89 nucleotides MPMX19_03169 and MPMX19_03170 are separated by 28 nucleotides MPMX19_03170 and MPMX19_03171 are separated by 7 nucleotides MPMX19_03171 and MPMX19_03172 are separated by 133 nucleotides
MPMX19_03168: MPMX19_03168 - hypothetical protein, at 463,225 to 463,863
_03168
MPMX19_03169: MPMX19_03169 - Dihydroanticapsin 7-dehydrogenase, at 463,953 to 464,732
_03169
MPMX19_03170: MPMX19_03170 - L-lactate transporter, at 464,761 to 466,041
_03170
MPMX19_03171: MPMX19_03171 - Leucine-responsive regulatory protein, at 466,049 to 466,531
_03171
MPMX19_03172: MPMX19_03172 - Pyruvate dehydrogenase E1 component, at 466,665 to 469,076
_03172
Position (kb) 464
465
466
467 Strain fitness (log2 ratio) -2
-1
0
1
2 at 463.931 kb on + strand at 463.931 kb on + strand at 463.932 kb on - strand at 463.932 kb on - strand at 464.439 kb on + strand, within MPMX19_03169 at 464.439 kb on + strand, within MPMX19_03169 at 464.440 kb on - strand, within MPMX19_03169 at 464.440 kb on - strand, within MPMX19_03169 at 464.440 kb on - strand, within MPMX19_03169 at 464.730 kb on + strand at 464.730 kb on + strand at 464.730 kb on + strand at 464.730 kb on + strand at 464.731 kb on - strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.832 kb on + strand at 464.833 kb on - strand at 465.156 kb on + strand, within MPMX19_03170 at 465.274 kb on + strand, within MPMX19_03170 at 465.274 kb on + strand, within MPMX19_03170 at 465.274 kb on + strand, within MPMX19_03170 at 465.274 kb on + strand, within MPMX19_03170 at 465.274 kb on + strand, within MPMX19_03170 at 465.274 kb on + strand, within MPMX19_03170 at 465.274 kb on + strand, within MPMX19_03170 at 465.275 kb on - strand, within MPMX19_03170 at 465.275 kb on - strand, within MPMX19_03170 at 465.275 kb on - strand, within MPMX19_03170 at 465.275 kb on - strand, within MPMX19_03170 at 465.275 kb on - strand, within MPMX19_03170 at 465.275 kb on - strand, within MPMX19_03170 at 465.275 kb on - strand, within MPMX19_03170 at 465.275 kb on - strand, within MPMX19_03170 at 465.275 kb on - strand, within MPMX19_03170 at 465.275 kb on - strand, within MPMX19_03170 at 465.275 kb on - strand, within MPMX19_03170 at 465.275 kb on - strand, within MPMX19_03170 at 465.275 kb on - strand, within MPMX19_03170 at 465.275 kb on - strand, within MPMX19_03170 at 465.275 kb on - strand, within MPMX19_03170 at 465.661 kb on + strand, within MPMX19_03170 at 465.688 kb on + strand, within MPMX19_03170 at 465.688 kb on + strand, within MPMX19_03170 at 465.688 kb on + strand, within MPMX19_03170 at 465.688 kb on + strand, within MPMX19_03170 at 465.688 kb on + strand, within MPMX19_03170 at 465.688 kb on + strand, within MPMX19_03170 at 465.688 kb on + strand, within MPMX19_03170 at 465.688 kb on + strand, within MPMX19_03170 at 465.689 kb on - strand, within MPMX19_03170 at 465.689 kb on - strand, within MPMX19_03170 at 465.689 kb on - strand, within MPMX19_03170 at 465.689 kb on - strand, within MPMX19_03170 at 465.689 kb on - strand, within MPMX19_03170 at 465.689 kb on - strand, within MPMX19_03170 at 465.691 kb on + strand, within MPMX19_03170 at 465.691 kb on + strand, within MPMX19_03170 at 465.691 kb on + strand, within MPMX19_03170 at 465.692 kb on - strand, within MPMX19_03170 at 465.692 kb on - strand, within MPMX19_03170 at 465.718 kb on + strand, within MPMX19_03170 at 465.718 kb on + strand, within MPMX19_03170 at 465.718 kb on + strand, within MPMX19_03170 at 465.718 kb on + strand, within MPMX19_03170 at 465.718 kb on + strand, within MPMX19_03170 at 465.718 kb on + strand, within MPMX19_03170 at 465.718 kb on + strand, within MPMX19_03170 at 465.719 kb on - strand, within MPMX19_03170 at 465.719 kb on - strand, within MPMX19_03170 at 465.719 kb on - strand, within MPMX19_03170 at 465.719 kb on - strand, within MPMX19_03170 at 465.719 kb on - strand, within MPMX19_03170 at 465.719 kb on - strand, within MPMX19_03170 at 465.727 kb on + strand, within MPMX19_03170 at 465.727 kb on + strand, within MPMX19_03170 at 465.727 kb on + strand, within MPMX19_03170 at 465.728 kb on - strand, within MPMX19_03170 at 465.745 kb on + strand, within MPMX19_03170 at 465.745 kb on + strand, within MPMX19_03170 at 465.745 kb on + strand, within MPMX19_03170 at 465.745 kb on + strand, within MPMX19_03170 at 465.745 kb on + strand, within MPMX19_03170 at 465.745 kb on + strand, within MPMX19_03170 at 465.746 kb on - strand, within MPMX19_03170 at 465.746 kb on - strand, within MPMX19_03170 at 465.746 kb on - strand, within MPMX19_03170 at 465.746 kb on - strand, within MPMX19_03170 at 465.772 kb on + strand, within MPMX19_03170 at 465.772 kb on + strand, within MPMX19_03170 at 465.772 kb on + strand, within MPMX19_03170 at 465.772 kb on + strand, within MPMX19_03170 at 465.772 kb on + strand, within MPMX19_03170 at 465.772 kb on + strand, within MPMX19_03170 at 465.773 kb on - strand, within MPMX19_03170 at 465.773 kb on - strand, within MPMX19_03170 at 465.773 kb on - strand, within MPMX19_03170 at 465.773 kb on - strand, within MPMX19_03170 at 465.773 kb on - strand, within MPMX19_03170 at 465.773 kb on - strand, within MPMX19_03170 at 465.773 kb on - strand, within MPMX19_03170 at 465.773 kb on - strand, within MPMX19_03170 at 465.940 kb on + strand at 465.940 kb on + strand at 465.940 kb on + strand at 465.940 kb on + strand at 465.940 kb on + strand at 465.940 kb on + strand at 465.940 kb on + strand at 465.940 kb on + strand at 465.940 kb on + strand at 465.940 kb on + strand at 465.940 kb on + strand at 465.941 kb on - strand at 465.941 kb on - strand at 465.941 kb on - strand at 465.941 kb on - strand at 465.941 kb on - strand at 465.941 kb on - strand at 465.941 kb on - strand at 465.941 kb on - strand at 465.941 kb on - strand at 466.170 kb on + strand, within MPMX19_03171 at 466.170 kb on + strand, within MPMX19_03171 at 466.170 kb on + strand, within MPMX19_03171 at 466.170 kb on + strand, within MPMX19_03171 at 466.170 kb on + strand, within MPMX19_03171 at 466.170 kb on + strand, within MPMX19_03171 at 466.170 kb on + strand, within MPMX19_03171 at 466.170 kb on + strand, within MPMX19_03171 at 466.170 kb on + strand, within MPMX19_03171 at 466.170 kb on + strand, within MPMX19_03171 at 466.170 kb on + strand, within MPMX19_03171 at 466.170 kb on + strand, within MPMX19_03171 at 466.170 kb on + strand, within MPMX19_03171 at 466.170 kb on + strand, within MPMX19_03171 at 466.170 kb on + strand, within MPMX19_03171 at 466.170 kb on + strand, within MPMX19_03171 at 466.170 kb on + strand, within MPMX19_03171 at 466.170 kb on + strand, within MPMX19_03171 at 466.171 kb on - strand, within MPMX19_03171 at 466.171 kb on - strand, within MPMX19_03171 at 466.171 kb on - strand, within MPMX19_03171 at 466.171 kb on - strand, within MPMX19_03171 at 466.171 kb on - strand, within MPMX19_03171 at 466.171 kb on - strand, within MPMX19_03171 at 466.171 kb on - strand, within MPMX19_03171 at 466.171 kb on - strand, within MPMX19_03171 at 466.171 kb on - strand, within MPMX19_03171 at 466.171 kb on - strand, within MPMX19_03171 at 466.171 kb on - strand, within MPMX19_03171 at 466.206 kb on + strand, within MPMX19_03171 at 466.206 kb on + strand, within MPMX19_03171 at 466.206 kb on + strand, within MPMX19_03171 at 466.207 kb on - strand, within MPMX19_03171 at 466.207 kb on - strand, within MPMX19_03171 at 466.230 kb on + strand, within MPMX19_03171 at 466.230 kb on + strand, within MPMX19_03171 at 466.230 kb on + strand, within MPMX19_03171 at 466.230 kb on + strand, within MPMX19_03171 at 466.230 kb on + strand, within MPMX19_03171 at 466.230 kb on + strand, within MPMX19_03171 at 466.230 kb on + strand, within MPMX19_03171 at 466.231 kb on - strand, within MPMX19_03171 at 466.231 kb on - strand, within MPMX19_03171 at 466.231 kb on - strand, within MPMX19_03171 at 466.231 kb on - strand, within MPMX19_03171 at 466.368 kb on + strand, within MPMX19_03171 at 466.368 kb on + strand, within MPMX19_03171 at 466.368 kb on + strand, within MPMX19_03171 at 466.369 kb on - strand, within MPMX19_03171 at 466.369 kb on - strand, within MPMX19_03171 at 466.369 kb on - strand, within MPMX19_03171 at 466.369 kb on - strand, within MPMX19_03171 at 466.369 kb on - strand, within MPMX19_03171 at 466.369 kb on - strand, within MPMX19_03171 at 466.551 kb on + strand at 466.552 kb on - strand at 466.569 kb on + strand at 466.569 kb on + strand at 466.570 kb on - strand at 466.570 kb on - strand at 466.640 kb on + strand at 466.640 kb on + strand at 466.640 kb on + strand at 466.641 kb on - strand at 466.726 kb on + strand at 466.726 kb on + strand at 466.726 kb on + strand at 466.726 kb on + strand at 466.726 kb on + strand at 466.726 kb on + strand at 466.726 kb on + strand at 466.726 kb on + strand at 466.726 kb on + strand at 466.727 kb on - strand at 466.727 kb on - strand at 466.727 kb on - strand at 466.727 kb on - strand at 466.848 kb on + strand at 466.848 kb on + strand at 466.848 kb on + strand at 466.848 kb on + strand at 466.848 kb on + strand at 466.849 kb on - strand at 466.849 kb on - strand at 466.849 kb on - strand at 466.849 kb on - strand at 466.849 kb on - strand at 466.849 kb on - strand at 466.923 kb on + strand, within MPMX19_03172 at 466.923 kb on + strand, within MPMX19_03172 at 466.923 kb on + strand, within MPMX19_03172 at 466.923 kb on + strand, within MPMX19_03172 at 466.923 kb on + strand, within MPMX19_03172 at 466.924 kb on - strand, within MPMX19_03172 at 466.924 kb on - strand, within MPMX19_03172 at 466.971 kb on + strand, within MPMX19_03172 at 466.971 kb on + strand, within MPMX19_03172 at 466.971 kb on + strand, within MPMX19_03172 at 466.971 kb on + strand, within MPMX19_03172 at 466.972 kb on - strand, within MPMX19_03172 at 466.972 kb on - strand, within MPMX19_03172 at 466.972 kb on - strand, within MPMX19_03172 at 466.972 kb on - strand, within MPMX19_03172 at 466.972 kb on - strand, within MPMX19_03172 at 466.972 kb on - strand, within MPMX19_03172 at 466.989 kb on + strand, within MPMX19_03172 at 466.990 kb on - strand, within MPMX19_03172
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 463,931 + -1.1 463,931 + -0.2 463,932 - +0.6 463,932 - -0.6 464,439 + MPMX19_03169 0.62 -0.2 464,439 + MPMX19_03169 0.62 -0.1 464,440 - MPMX19_03169 0.62 -0.6 464,440 - MPMX19_03169 0.62 +1.1 464,440 - MPMX19_03169 0.62 +0.9 464,730 + -1.2 464,730 + +0.5 464,730 + -1.7 464,730 + -0.2 464,731 - +1.2 464,809 + -1.3 464,809 + -1.2 464,809 + -0.6 464,809 + +0.3 464,809 + +1.4 464,809 + +0.5 464,809 + +0.2 464,809 + +0.3 464,809 + -0.7 464,809 + -0.2 464,809 + -1.3 464,809 + -0.7 464,809 + +0.5 464,810 - -0.2 464,810 - -1.3 464,810 - +0.5 464,810 - +0.3 464,810 - -1.1 464,810 - +0.6 464,810 - +1.6 464,810 - -0.8 464,810 - +0.2 464,810 - +0.6 464,810 - +1.1 464,810 - -0.4 464,810 - -1.5 464,810 - -0.4 464,832 + +0.1 464,833 - -1.6 465,156 + MPMX19_03170 0.31 -0.7 465,274 + MPMX19_03170 0.40 +1.0 465,274 + MPMX19_03170 0.40 -0.5 465,274 + MPMX19_03170 0.40 +0.1 465,274 + MPMX19_03170 0.40 -0.6 465,274 + MPMX19_03170 0.40 +0.1 465,274 + MPMX19_03170 0.40 +0.5 465,274 + MPMX19_03170 0.40 -1.3 465,275 - MPMX19_03170 0.40 -0.1 465,275 - MPMX19_03170 0.40 -1.4 465,275 - MPMX19_03170 0.40 +0.5 465,275 - MPMX19_03170 0.40 +0.3 465,275 - MPMX19_03170 0.40 +0.2 465,275 - MPMX19_03170 0.40 -0.0 465,275 - MPMX19_03170 0.40 -0.5 465,275 - MPMX19_03170 0.40 -0.7 465,275 - MPMX19_03170 0.40 -0.6 465,275 - MPMX19_03170 0.40 -0.1 465,275 - MPMX19_03170 0.40 -0.9 465,275 - MPMX19_03170 0.40 -1.1 465,275 - MPMX19_03170 0.40 +1.1 465,275 - MPMX19_03170 0.40 -0.2 465,275 - MPMX19_03170 0.40 -1.1 465,661 + MPMX19_03170 0.70 -1.4 465,688 + MPMX19_03170 0.72 +1.5 465,688 + MPMX19_03170 0.72 +0.2 465,688 + MPMX19_03170 0.72 -0.6 465,688 + MPMX19_03170 0.72 -0.8 465,688 + MPMX19_03170 0.72 +0.3 465,688 + MPMX19_03170 0.72 +0.9 465,688 + MPMX19_03170 0.72 -0.6 465,688 + MPMX19_03170 0.72 -0.5 465,689 - MPMX19_03170 0.72 +0.3 465,689 - MPMX19_03170 0.72 +0.9 465,689 - MPMX19_03170 0.72 -1.8 465,689 - MPMX19_03170 0.72 -0.0 465,689 - MPMX19_03170 0.72 +0.3 465,689 - MPMX19_03170 0.72 +1.3 465,691 + MPMX19_03170 0.73 -1.2 465,691 + MPMX19_03170 0.73 +1.1 465,691 + MPMX19_03170 0.73 -0.2 465,692 - MPMX19_03170 0.73 +0.2 465,692 - MPMX19_03170 0.73 -0.2 465,718 + MPMX19_03170 0.75 -1.6 465,718 + MPMX19_03170 0.75 -0.5 465,718 + MPMX19_03170 0.75 -1.4 465,718 + MPMX19_03170 0.75 +1.8 465,718 + MPMX19_03170 0.75 +0.5 465,718 + MPMX19_03170 0.75 -1.8 465,718 + MPMX19_03170 0.75 -0.4 465,719 - MPMX19_03170 0.75 -2.4 465,719 - MPMX19_03170 0.75 +0.1 465,719 - MPMX19_03170 0.75 +1.1 465,719 - MPMX19_03170 0.75 -0.7 465,719 - MPMX19_03170 0.75 -0.1 465,719 - MPMX19_03170 0.75 +0.1 465,727 + MPMX19_03170 0.75 +0.5 465,727 + MPMX19_03170 0.75 +0.4 465,727 + MPMX19_03170 0.75 +0.4 465,728 - MPMX19_03170 0.75 -0.4 465,745 + MPMX19_03170 0.77 +0.9 465,745 + MPMX19_03170 0.77 +0.4 465,745 + MPMX19_03170 0.77 +0.5 465,745 + MPMX19_03170 0.77 +0.1 465,745 + MPMX19_03170 0.77 -0.6 465,745 + MPMX19_03170 0.77 -0.8 465,746 - MPMX19_03170 0.77 +0.4 465,746 - MPMX19_03170 0.77 +0.1 465,746 - MPMX19_03170 0.77 -2.0 465,746 - MPMX19_03170 0.77 -1.9 465,772 + MPMX19_03170 0.79 -0.8 465,772 + MPMX19_03170 0.79 -0.2 465,772 + MPMX19_03170 0.79 +0.5 465,772 + MPMX19_03170 0.79 +0.4 465,772 + MPMX19_03170 0.79 -0.0 465,772 + MPMX19_03170 0.79 +1.1 465,773 - MPMX19_03170 0.79 -0.5 465,773 - MPMX19_03170 0.79 -2.1 465,773 - MPMX19_03170 0.79 -0.2 465,773 - MPMX19_03170 0.79 +0.7 465,773 - MPMX19_03170 0.79 +0.3 465,773 - MPMX19_03170 0.79 -0.6 465,773 - MPMX19_03170 0.79 -1.2 465,773 - MPMX19_03170 0.79 -1.7 465,940 + -0.5 465,940 + -0.2 465,940 + +1.1 465,940 + -0.9 465,940 + +0.1 465,940 + +0.5 465,940 + +2.1 465,940 + -0.4 465,940 + -1.2 465,940 + -1.2 465,940 + -0.1 465,941 - -1.0 465,941 - -0.4 465,941 - +0.0 465,941 - -0.3 465,941 - +0.5 465,941 - -1.4 465,941 - +0.1 465,941 - -0.2 465,941 - -0.7 466,170 + MPMX19_03171 0.25 -0.5 466,170 + MPMX19_03171 0.25 -1.2 466,170 + MPMX19_03171 0.25 -0.2 466,170 + MPMX19_03171 0.25 +0.0 466,170 + MPMX19_03171 0.25 -0.5 466,170 + MPMX19_03171 0.25 -0.7 466,170 + MPMX19_03171 0.25 +0.1 466,170 + MPMX19_03171 0.25 -2.1 466,170 + MPMX19_03171 0.25 +0.8 466,170 + MPMX19_03171 0.25 -1.2 466,170 + MPMX19_03171 0.25 -0.4 466,170 + MPMX19_03171 0.25 -1.5 466,170 + MPMX19_03171 0.25 -0.5 466,170 + MPMX19_03171 0.25 -1.1 466,170 + MPMX19_03171 0.25 -1.1 466,170 + MPMX19_03171 0.25 +0.9 466,170 + MPMX19_03171 0.25 -0.2 466,170 + MPMX19_03171 0.25 -0.7 466,171 - MPMX19_03171 0.25 +2.1 466,171 - MPMX19_03171 0.25 -0.7 466,171 - MPMX19_03171 0.25 -1.1 466,171 - MPMX19_03171 0.25 -0.9 466,171 - MPMX19_03171 0.25 -0.7 466,171 - MPMX19_03171 0.25 -0.2 466,171 - MPMX19_03171 0.25 +0.0 466,171 - MPMX19_03171 0.25 -0.2 466,171 - MPMX19_03171 0.25 -1.1 466,171 - MPMX19_03171 0.25 +0.1 466,171 - MPMX19_03171 0.25 +0.3 466,206 + MPMX19_03171 0.33 -2.4 466,206 + MPMX19_03171 0.33 -0.5 466,206 + MPMX19_03171 0.33 -0.0 466,207 - MPMX19_03171 0.33 +0.4 466,207 - MPMX19_03171 0.33 -0.6 466,230 + MPMX19_03171 0.37 -0.1 466,230 + MPMX19_03171 0.37 -0.2 466,230 + MPMX19_03171 0.37 -1.9 466,230 + MPMX19_03171 0.37 -1.1 466,230 + MPMX19_03171 0.37 -0.2 466,230 + MPMX19_03171 0.37 +0.1 466,230 + MPMX19_03171 0.37 -0.8 466,231 - MPMX19_03171 0.38 -1.7 466,231 - MPMX19_03171 0.38 -1.5 466,231 - MPMX19_03171 0.38 +0.4 466,231 - MPMX19_03171 0.38 -2.5 466,368 + MPMX19_03171 0.66 +0.5 466,368 + MPMX19_03171 0.66 -0.0 466,368 + MPMX19_03171 0.66 -2.0 466,369 - MPMX19_03171 0.66 -0.8 466,369 - MPMX19_03171 0.66 +1.5 466,369 - MPMX19_03171 0.66 -0.9 466,369 - MPMX19_03171 0.66 +0.1 466,369 - MPMX19_03171 0.66 +0.5 466,369 - MPMX19_03171 0.66 -0.5 466,551 + -0.5 466,552 - -0.5 466,569 + +0.3 466,569 + +1.8 466,570 - -1.7 466,570 - -0.7 466,640 + -0.5 466,640 + -1.0 466,640 + +0.1 466,641 - -0.1 466,726 + +0.1 466,726 + +0.6 466,726 + -0.4 466,726 + -0.9 466,726 + +0.3 466,726 + -0.4 466,726 + -0.5 466,726 + +0.2 466,726 + -0.1 466,727 - +0.1 466,727 - -1.2 466,727 - +0.8 466,727 - -0.2 466,848 + +2.1 466,848 + -1.2 466,848 + +0.1 466,848 + -0.9 466,848 + +1.4 466,849 - -0.9 466,849 - +0.3 466,849 - +0.1 466,849 - -0.5 466,849 - -1.7 466,849 - +0.1 466,923 + MPMX19_03172 0.11 -0.9 466,923 + MPMX19_03172 0.11 -0.7 466,923 + MPMX19_03172 0.11 -1.1 466,923 + MPMX19_03172 0.11 +0.6 466,923 + MPMX19_03172 0.11 -0.4 466,924 - MPMX19_03172 0.11 -0.1 466,924 - MPMX19_03172 0.11 -1.0 466,971 + MPMX19_03172 0.13 -0.1 466,971 + MPMX19_03172 0.13 -1.1 466,971 + MPMX19_03172 0.13 -0.2 466,971 + MPMX19_03172 0.13 +1.4 466,972 - MPMX19_03172 0.13 +0.1 466,972 - MPMX19_03172 0.13 -1.1 466,972 - MPMX19_03172 0.13 +0.7 466,972 - MPMX19_03172 0.13 -2.2 466,972 - MPMX19_03172 0.13 -1.4 466,972 - MPMX19_03172 0.13 -0.9 466,989 + MPMX19_03172 0.13 +1.5 466,990 - MPMX19_03172 0.13 -0.3
Or see this region's nucleotide sequence