Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03158 and MPMX19_03159 overlap by 4 nucleotides MPMX19_03159 and MPMX19_03160 are separated by 6 nucleotides MPMX19_03160 and MPMX19_03161 are separated by 114 nucleotides
MPMX19_03158: MPMX19_03158 - putative protein YcjX, at 450,397 to 451,791
_03158
MPMX19_03159: MPMX19_03159 - hypothetical protein, at 451,788 to 452,810
_03159
MPMX19_03160: MPMX19_03160 - Arsenate reductase, at 452,817 to 453,347
_03160
MPMX19_03161: MPMX19_03161 - Quercetin 2,3-dioxygenase, at 453,462 to 454,160
_03161
Position (kb) 451
452
453 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 450.793 kb on + strand, within MPMX19_03158 at 450.793 kb on + strand, within MPMX19_03158 at 450.982 kb on + strand, within MPMX19_03158 at 450.982 kb on + strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 451.166 kb on - strand, within MPMX19_03158 at 451.174 kb on + strand, within MPMX19_03158 at 451.174 kb on + strand, within MPMX19_03158 at 451.174 kb on + strand, within MPMX19_03158 at 451.174 kb on + strand, within MPMX19_03158 at 451.175 kb on - strand, within MPMX19_03158 at 451.175 kb on - strand, within MPMX19_03158 at 451.678 kb on + strand at 451.678 kb on + strand at 451.678 kb on + strand at 451.678 kb on + strand at 451.678 kb on + strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.680 kb on + strand at 451.680 kb on + strand at 451.680 kb on + strand at 451.680 kb on + strand at 451.680 kb on + strand at 451.680 kb on - strand at 451.681 kb on - strand at 451.681 kb on - strand at 451.681 kb on - strand at 451.681 kb on - strand at 451.681 kb on - strand at 451.681 kb on - strand at 451.681 kb on - strand at 451.681 kb on - strand at 451.780 kb on + strand at 451.780 kb on + strand at 451.780 kb on + strand at 451.780 kb on + strand at 451.780 kb on + strand at 451.780 kb on + strand at 451.780 kb on + strand at 451.780 kb on + strand at 451.781 kb on - strand at 451.781 kb on - strand at 451.781 kb on - strand at 451.781 kb on - strand at 451.781 kb on - strand at 451.781 kb on - strand at 451.781 kb on - strand at 451.781 kb on - strand at 451.781 kb on - strand at 452.256 kb on + strand, within MPMX19_03159 at 452.256 kb on + strand, within MPMX19_03159 at 452.256 kb on + strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.386 kb on - strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.529 kb on + strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 453.328 kb on + strand at 453.328 kb on + strand at 453.328 kb on + strand at 453.329 kb on - strand at 453.444 kb on + strand at 453.444 kb on + strand at 453.444 kb on + strand at 453.444 kb on + strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.664 kb on + strand, within MPMX19_03161 at 453.664 kb on + strand, within MPMX19_03161 at 453.664 kb on + strand, within MPMX19_03161 at 453.665 kb on - strand, within MPMX19_03161 at 453.665 kb on - strand, within MPMX19_03161 at 453.665 kb on - strand, within MPMX19_03161 at 453.665 kb on - strand, within MPMX19_03161 at 453.772 kb on + strand, within MPMX19_03161
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 450,793 + MPMX19_03158 0.28 -1.3 450,793 + MPMX19_03158 0.28 -0.5 450,982 + MPMX19_03158 0.42 +1.7 450,982 + MPMX19_03158 0.42 +0.1 450,983 - MPMX19_03158 0.42 -0.5 450,983 - MPMX19_03158 0.42 -1.7 450,983 - MPMX19_03158 0.42 -0.2 450,983 - MPMX19_03158 0.42 +0.4 450,983 - MPMX19_03158 0.42 -0.7 450,983 - MPMX19_03158 0.42 -1.2 450,991 + MPMX19_03158 0.43 +0.4 450,991 + MPMX19_03158 0.43 -0.7 450,991 + MPMX19_03158 0.43 -0.1 450,991 + MPMX19_03158 0.43 +0.2 450,991 + MPMX19_03158 0.43 -0.5 450,991 + MPMX19_03158 0.43 -0.5 450,992 - MPMX19_03158 0.43 -0.3 450,992 - MPMX19_03158 0.43 -1.4 450,992 - MPMX19_03158 0.43 -0.0 450,992 - MPMX19_03158 0.43 +0.4 450,992 - MPMX19_03158 0.43 -1.4 450,992 - MPMX19_03158 0.43 -0.8 450,992 - MPMX19_03158 0.43 -0.4 450,992 - MPMX19_03158 0.43 -1.5 451,166 - MPMX19_03158 0.55 -0.1 451,174 + MPMX19_03158 0.56 -1.7 451,174 + MPMX19_03158 0.56 +0.1 451,174 + MPMX19_03158 0.56 -1.1 451,174 + MPMX19_03158 0.56 +0.7 451,175 - MPMX19_03158 0.56 -0.5 451,175 - MPMX19_03158 0.56 +0.7 451,678 + -0.7 451,678 + -0.9 451,678 + -2.1 451,678 + +1.0 451,678 + +0.3 451,679 - +0.7 451,679 - -0.1 451,679 - +0.2 451,679 - -2.0 451,679 - +1.3 451,679 - -1.5 451,679 - -1.1 451,679 - -0.8 451,679 - -0.6 451,679 - -0.9 451,679 - -0.7 451,679 - -0.7 451,679 - -0.2 451,679 - +1.3 451,679 - -0.9 451,679 - -1.5 451,679 - -1.4 451,679 - -0.4 451,679 - -0.3 451,680 + -0.3 451,680 + -1.4 451,680 + +0.2 451,680 + -0.1 451,680 + +0.6 451,680 - -0.0 451,681 - -0.7 451,681 - -0.3 451,681 - -1.8 451,681 - +1.4 451,681 - +0.7 451,681 - -0.5 451,681 - -0.7 451,681 - -0.7 451,780 + -1.2 451,780 + -1.5 451,780 + +0.7 451,780 + -0.9 451,780 + +0.0 451,780 + -1.2 451,780 + -1.4 451,780 + +0.3 451,781 - +0.1 451,781 - -0.6 451,781 - +0.3 451,781 - +0.0 451,781 - -1.6 451,781 - -0.1 451,781 - -1.7 451,781 - -1.1 451,781 - -0.5 452,256 + MPMX19_03159 0.46 -1.5 452,256 + MPMX19_03159 0.46 -0.8 452,256 + MPMX19_03159 0.46 -0.4 452,257 - MPMX19_03159 0.46 -1.0 452,257 - MPMX19_03159 0.46 -0.9 452,257 - MPMX19_03159 0.46 -2.1 452,257 - MPMX19_03159 0.46 -1.4 452,257 - MPMX19_03159 0.46 -0.3 452,257 - MPMX19_03159 0.46 +0.2 452,257 - MPMX19_03159 0.46 -0.4 452,386 - MPMX19_03159 0.58 -0.2 452,511 + MPMX19_03159 0.71 -1.7 452,511 + MPMX19_03159 0.71 +0.6 452,511 + MPMX19_03159 0.71 -0.9 452,511 + MPMX19_03159 0.71 -1.1 452,511 + MPMX19_03159 0.71 -0.1 452,511 + MPMX19_03159 0.71 -2.3 452,512 - MPMX19_03159 0.71 +0.4 452,512 - MPMX19_03159 0.71 -0.5 452,512 - MPMX19_03159 0.71 -0.3 452,512 - MPMX19_03159 0.71 -1.1 452,512 - MPMX19_03159 0.71 -1.2 452,512 - MPMX19_03159 0.71 -0.5 452,529 + MPMX19_03159 0.72 -0.8 452,530 - MPMX19_03159 0.73 -0.0 452,530 - MPMX19_03159 0.73 -1.8 452,530 - MPMX19_03159 0.73 +0.5 452,530 - MPMX19_03159 0.73 +0.3 452,530 - MPMX19_03159 0.73 -0.7 452,530 - MPMX19_03159 0.73 -2.8 452,953 + MPMX19_03160 0.26 -1.4 452,953 + MPMX19_03160 0.26 -0.8 452,953 + MPMX19_03160 0.26 -1.1 452,953 + MPMX19_03160 0.26 +0.2 452,953 + MPMX19_03160 0.26 -1.0 452,953 + MPMX19_03160 0.26 -0.2 452,953 + MPMX19_03160 0.26 +0.3 452,953 + MPMX19_03160 0.26 -1.8 452,953 + MPMX19_03160 0.26 +0.5 452,953 + MPMX19_03160 0.26 -0.9 452,953 + MPMX19_03160 0.26 -1.4 452,953 + MPMX19_03160 0.26 -1.3 452,953 + MPMX19_03160 0.26 -0.1 452,953 + MPMX19_03160 0.26 -0.6 452,953 + MPMX19_03160 0.26 -1.0 452,953 + MPMX19_03160 0.26 -1.7 452,953 + MPMX19_03160 0.26 +0.1 452,953 + MPMX19_03160 0.26 -1.0 452,953 + MPMX19_03160 0.26 +0.2 452,953 + MPMX19_03160 0.26 -0.5 452,953 + MPMX19_03160 0.26 -1.4 452,953 + MPMX19_03160 0.26 -0.5 452,953 + MPMX19_03160 0.26 -0.5 452,953 + MPMX19_03160 0.26 -0.6 452,953 + MPMX19_03160 0.26 -1.8 452,953 + MPMX19_03160 0.26 -0.7 452,953 + MPMX19_03160 0.26 -1.1 452,954 - MPMX19_03160 0.26 -0.2 452,954 - MPMX19_03160 0.26 +0.5 452,954 - MPMX19_03160 0.26 -0.2 452,954 - MPMX19_03160 0.26 -0.4 452,954 - MPMX19_03160 0.26 -0.1 452,954 - MPMX19_03160 0.26 -0.3 452,954 - MPMX19_03160 0.26 -1.2 452,954 - MPMX19_03160 0.26 -0.5 452,954 - MPMX19_03160 0.26 -1.9 452,954 - MPMX19_03160 0.26 +0.3 452,954 - MPMX19_03160 0.26 +0.5 452,954 - MPMX19_03160 0.26 -0.5 452,954 - MPMX19_03160 0.26 +0.7 452,954 - MPMX19_03160 0.26 +0.8 452,954 - MPMX19_03160 0.26 -2.6 452,954 - MPMX19_03160 0.26 -1.2 452,954 - MPMX19_03160 0.26 -0.5 452,954 - MPMX19_03160 0.26 -1.3 452,954 - MPMX19_03160 0.26 +1.1 452,954 - MPMX19_03160 0.26 +0.1 452,954 - MPMX19_03160 0.26 +0.3 452,954 - MPMX19_03160 0.26 -1.7 452,954 - MPMX19_03160 0.26 -0.3 452,954 - MPMX19_03160 0.26 -0.5 452,954 - MPMX19_03160 0.26 +0.9 452,954 - MPMX19_03160 0.26 +0.1 452,954 - MPMX19_03160 0.26 -0.8 452,954 - MPMX19_03160 0.26 +0.2 452,954 - MPMX19_03160 0.26 -0.5 453,328 + -0.4 453,328 + -1.1 453,328 + -0.0 453,329 - -0.7 453,444 + +0.6 453,444 + -0.1 453,444 + -0.9 453,444 + -0.7 453,445 - -0.9 453,445 - +0.3 453,445 - -0.2 453,445 - +0.8 453,445 - +0.1 453,445 - -2.4 453,445 - +0.1 453,463 + -0.9 453,463 + +0.1 453,463 + -1.2 453,463 + -0.5 453,463 + -2.4 453,463 + -0.8 453,464 - +0.5 453,464 - -0.2 453,464 - +0.1 453,464 - -0.8 453,464 - +0.1 453,464 - -1.1 453,464 - -0.6 453,664 + MPMX19_03161 0.29 -1.5 453,664 + MPMX19_03161 0.29 +0.9 453,664 + MPMX19_03161 0.29 -1.5 453,665 - MPMX19_03161 0.29 -0.5 453,665 - MPMX19_03161 0.29 -0.3 453,665 - MPMX19_03161 0.29 +1.0 453,665 - MPMX19_03161 0.29 +0.2 453,772 + MPMX19_03161 0.44 -0.5
Or see this region's nucleotide sequence