Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03148 and MPMX19_03149 are separated by 41 nucleotides MPMX19_03149 and MPMX19_03150 overlap by 4 nucleotides MPMX19_03150 and MPMX19_03151 overlap by 4 nucleotides
MPMX19_03148: MPMX19_03148 - hypothetical protein, at 441,114 to 442,661
_03148
MPMX19_03149: MPMX19_03149 - hypothetical protein, at 442,703 to 443,422
_03149
MPMX19_03150: MPMX19_03150 - hypothetical protein, at 443,419 to 444,855
_03150
MPMX19_03151: MPMX19_03151 - hypothetical protein, at 444,852 to 446,009
_03151
Position (kb) 443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 442.452 kb on + strand, within MPMX19_03148 at 442.452 kb on + strand, within MPMX19_03148 at 442.452 kb on + strand, within MPMX19_03148 at 442.452 kb on + strand, within MPMX19_03148 at 442.452 kb on + strand, within MPMX19_03148 at 442.452 kb on + strand, within MPMX19_03148 at 442.453 kb on - strand, within MPMX19_03148 at 442.453 kb on - strand, within MPMX19_03148 at 442.453 kb on - strand, within MPMX19_03148 at 442.464 kb on + strand, within MPMX19_03148 at 442.464 kb on + strand, within MPMX19_03148 at 442.464 kb on + strand, within MPMX19_03148 at 442.464 kb on + strand, within MPMX19_03148 at 442.464 kb on + strand, within MPMX19_03148 at 442.464 kb on + strand, within MPMX19_03148 at 442.464 kb on + strand, within MPMX19_03148 at 442.464 kb on + strand, within MPMX19_03148 at 442.464 kb on + strand, within MPMX19_03148 at 442.464 kb on + strand, within MPMX19_03148 at 442.464 kb on + strand, within MPMX19_03148 at 442.464 kb on + strand, within MPMX19_03148 at 442.465 kb on - strand, within MPMX19_03148 at 442.465 kb on - strand, within MPMX19_03148 at 442.465 kb on - strand, within MPMX19_03148 at 442.465 kb on - strand, within MPMX19_03148 at 442.465 kb on - strand, within MPMX19_03148 at 442.465 kb on - strand, within MPMX19_03148 at 442.465 kb on - strand, within MPMX19_03148 at 442.465 kb on - strand, within MPMX19_03148 at 442.465 kb on - strand, within MPMX19_03148 at 442.465 kb on - strand, within MPMX19_03148 at 442.465 kb on - strand, within MPMX19_03148 at 442.465 kb on - strand, within MPMX19_03148 at 442.465 kb on - strand, within MPMX19_03148 at 442.465 kb on - strand, within MPMX19_03148 at 442.465 kb on - strand, within MPMX19_03148 at 442.465 kb on - strand, within MPMX19_03148 at 442.465 kb on - strand, within MPMX19_03148 at 442.474 kb on - strand, within MPMX19_03148 at 442.492 kb on - strand, within MPMX19_03148 at 442.497 kb on + strand, within MPMX19_03148 at 442.497 kb on + strand, within MPMX19_03148 at 442.497 kb on + strand, within MPMX19_03148 at 442.498 kb on - strand, within MPMX19_03148 at 442.498 kb on - strand, within MPMX19_03148 at 442.498 kb on - strand, within MPMX19_03148 at 442.656 kb on + strand at 442.656 kb on + strand at 442.656 kb on + strand at 442.657 kb on - strand at 442.678 kb on + strand at 442.678 kb on + strand at 442.678 kb on + strand at 442.679 kb on - strand at 442.679 kb on - strand at 442.679 kb on - strand at 442.679 kb on - strand at 442.949 kb on + strand, within MPMX19_03149 at 442.949 kb on + strand, within MPMX19_03149 at 442.949 kb on + strand, within MPMX19_03149 at 442.949 kb on + strand, within MPMX19_03149 at 442.949 kb on + strand, within MPMX19_03149 at 442.949 kb on + strand, within MPMX19_03149 at 442.949 kb on + strand, within MPMX19_03149 at 442.949 kb on + strand, within MPMX19_03149 at 442.949 kb on + strand, within MPMX19_03149 at 442.949 kb on + strand, within MPMX19_03149 at 442.949 kb on + strand, within MPMX19_03149 at 442.949 kb on + strand, within MPMX19_03149 at 442.950 kb on - strand, within MPMX19_03149 at 442.950 kb on - strand, within MPMX19_03149 at 442.950 kb on - strand, within MPMX19_03149 at 442.950 kb on - strand, within MPMX19_03149 at 442.950 kb on - strand, within MPMX19_03149 at 442.950 kb on - strand, within MPMX19_03149 at 442.950 kb on - strand, within MPMX19_03149 at 442.950 kb on - strand, within MPMX19_03149 at 442.950 kb on - strand, within MPMX19_03149 at 442.950 kb on - strand, within MPMX19_03149 at 442.950 kb on - strand, within MPMX19_03149 at 443.135 kb on + strand, within MPMX19_03149 at 443.135 kb on + strand, within MPMX19_03149 at 443.135 kb on + strand, within MPMX19_03149 at 443.136 kb on - strand, within MPMX19_03149 at 443.136 kb on - strand, within MPMX19_03149 at 443.136 kb on - strand, within MPMX19_03149 at 443.136 kb on - strand, within MPMX19_03149 at 443.136 kb on - strand, within MPMX19_03149 at 443.141 kb on + strand, within MPMX19_03149 at 443.396 kb on + strand at 443.396 kb on + strand at 443.396 kb on + strand at 443.396 kb on + strand at 443.397 kb on - strand at 443.397 kb on - strand at 443.397 kb on - strand at 443.397 kb on - strand at 443.397 kb on - strand at 443.397 kb on - strand at 443.397 kb on - strand at 443.397 kb on - strand at 443.639 kb on - strand, within MPMX19_03150 at 443.731 kb on + strand, within MPMX19_03150 at 443.731 kb on + strand, within MPMX19_03150 at 443.731 kb on + strand, within MPMX19_03150 at 443.732 kb on - strand, within MPMX19_03150 at 443.732 kb on - strand, within MPMX19_03150 at 443.732 kb on - strand, within MPMX19_03150 at 443.732 kb on - strand, within MPMX19_03150 at 443.732 kb on - strand, within MPMX19_03150 at 443.732 kb on - strand, within MPMX19_03150 at 443.887 kb on + strand, within MPMX19_03150 at 443.887 kb on + strand, within MPMX19_03150 at 443.888 kb on - strand, within MPMX19_03150 at 443.962 kb on + strand, within MPMX19_03150 at 443.962 kb on + strand, within MPMX19_03150 at 443.962 kb on + strand, within MPMX19_03150 at 443.963 kb on - strand, within MPMX19_03150 at 443.963 kb on - strand, within MPMX19_03150 at 443.963 kb on - strand, within MPMX19_03150 at 443.963 kb on - strand, within MPMX19_03150 at 444.130 kb on + strand, within MPMX19_03150 at 444.130 kb on + strand, within MPMX19_03150 at 444.130 kb on + strand, within MPMX19_03150 at 444.130 kb on + strand, within MPMX19_03150 at 444.130 kb on + strand, within MPMX19_03150 at 444.130 kb on + strand, within MPMX19_03150 at 444.130 kb on + strand, within MPMX19_03150 at 444.130 kb on + strand, within MPMX19_03150 at 444.130 kb on + strand, within MPMX19_03150 at 444.131 kb on - strand, within MPMX19_03150 at 444.131 kb on - strand, within MPMX19_03150 at 444.131 kb on - strand, within MPMX19_03150 at 444.131 kb on - strand, within MPMX19_03150 at 444.131 kb on - strand, within MPMX19_03150 at 444.131 kb on - strand, within MPMX19_03150 at 444.131 kb on - strand, within MPMX19_03150 at 444.131 kb on - strand, within MPMX19_03150 at 444.131 kb on - strand, within MPMX19_03150 at 444.131 kb on - strand, within MPMX19_03150 at 444.131 kb on - strand, within MPMX19_03150 at 444.131 kb on - strand, within MPMX19_03150 at 444.131 kb on - strand, within MPMX19_03150 at 444.398 kb on - strand, within MPMX19_03150 at 444.442 kb on + strand, within MPMX19_03150 at 444.442 kb on + strand, within MPMX19_03150 at 444.442 kb on + strand, within MPMX19_03150 at 444.442 kb on + strand, within MPMX19_03150 at 444.442 kb on + strand, within MPMX19_03150 at 444.443 kb on - strand, within MPMX19_03150 at 444.443 kb on - strand, within MPMX19_03150 at 444.443 kb on - strand, within MPMX19_03150 at 444.443 kb on - strand, within MPMX19_03150 at 444.454 kb on + strand, within MPMX19_03150 at 444.454 kb on + strand, within MPMX19_03150 at 444.454 kb on + strand, within MPMX19_03150 at 444.454 kb on + strand, within MPMX19_03150 at 444.454 kb on + strand, within MPMX19_03150 at 444.454 kb on + strand, within MPMX19_03150 at 444.454 kb on + strand, within MPMX19_03150 at 444.454 kb on + strand, within MPMX19_03150 at 444.454 kb on + strand, within MPMX19_03150 at 444.454 kb on + strand, within MPMX19_03150 at 444.454 kb on + strand, within MPMX19_03150 at 444.454 kb on + strand, within MPMX19_03150 at 444.454 kb on + strand, within MPMX19_03150 at 444.455 kb on - strand, within MPMX19_03150 at 444.455 kb on - strand, within MPMX19_03150 at 444.455 kb on - strand, within MPMX19_03150 at 444.455 kb on - strand, within MPMX19_03150 at 444.455 kb on - strand, within MPMX19_03150 at 444.455 kb on - strand, within MPMX19_03150 at 444.455 kb on - strand, within MPMX19_03150 at 444.455 kb on - strand, within MPMX19_03150 at 444.455 kb on - strand, within MPMX19_03150 at 444.455 kb on - strand, within MPMX19_03150 at 444.455 kb on - strand, within MPMX19_03150 at 444.455 kb on - strand, within MPMX19_03150 at 445.233 kb on + strand, within MPMX19_03151 at 445.233 kb on + strand, within MPMX19_03151 at 445.233 kb on + strand, within MPMX19_03151 at 445.233 kb on + strand, within MPMX19_03151 at 445.233 kb on + strand, within MPMX19_03151 at 445.233 kb on + strand, within MPMX19_03151 at 445.233 kb on + strand, within MPMX19_03151 at 445.233 kb on + strand, within MPMX19_03151 at 445.233 kb on + strand, within MPMX19_03151 at 445.234 kb on - strand, within MPMX19_03151 at 445.234 kb on - strand, within MPMX19_03151 at 445.234 kb on - strand, within MPMX19_03151 at 445.234 kb on - strand, within MPMX19_03151 at 445.234 kb on - strand, within MPMX19_03151 at 445.234 kb on - strand, within MPMX19_03151 at 445.234 kb on - strand, within MPMX19_03151 at 445.234 kb on - strand, within MPMX19_03151 at 445.281 kb on + strand, within MPMX19_03151 at 445.281 kb on + strand, within MPMX19_03151 at 445.281 kb on + strand, within MPMX19_03151 at 445.281 kb on + strand, within MPMX19_03151 at 445.281 kb on + strand, within MPMX19_03151 at 445.281 kb on + strand, within MPMX19_03151 at 445.282 kb on - strand, within MPMX19_03151 at 445.282 kb on - strand, within MPMX19_03151 at 445.282 kb on - strand, within MPMX19_03151 at 445.282 kb on - strand, within MPMX19_03151 at 445.282 kb on - strand, within MPMX19_03151 at 445.282 kb on - strand, within MPMX19_03151 at 445.282 kb on - strand, within MPMX19_03151 at 445.599 kb on + strand, within MPMX19_03151 at 445.599 kb on + strand, within MPMX19_03151 at 445.599 kb on + strand, within MPMX19_03151 at 445.599 kb on + strand, within MPMX19_03151 at 445.600 kb on - strand, within MPMX19_03151 at 445.600 kb on - strand, within MPMX19_03151 at 445.600 kb on - strand, within MPMX19_03151 at 445.815 kb on + strand, within MPMX19_03151 at 445.816 kb on - strand, within MPMX19_03151 at 445.816 kb on - strand, within MPMX19_03151 at 445.816 kb on - strand, within MPMX19_03151
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 442,452 + MPMX19_03148 0.86 -0.5 442,452 + MPMX19_03148 0.86 -1.6 442,452 + MPMX19_03148 0.86 +1.8 442,452 + MPMX19_03148 0.86 -0.7 442,452 + MPMX19_03148 0.86 +0.1 442,452 + MPMX19_03148 0.86 -0.9 442,453 - MPMX19_03148 0.86 -0.5 442,453 - MPMX19_03148 0.86 -0.1 442,453 - MPMX19_03148 0.86 -1.7 442,464 + MPMX19_03148 0.87 -0.7 442,464 + MPMX19_03148 0.87 -0.9 442,464 + MPMX19_03148 0.87 -0.0 442,464 + MPMX19_03148 0.87 -2.6 442,464 + MPMX19_03148 0.87 +0.6 442,464 + MPMX19_03148 0.87 -1.0 442,464 + MPMX19_03148 0.87 +1.1 442,464 + MPMX19_03148 0.87 -0.9 442,464 + MPMX19_03148 0.87 +1.0 442,464 + MPMX19_03148 0.87 -2.9 442,464 + MPMX19_03148 0.87 +0.3 442,464 + MPMX19_03148 0.87 +0.5 442,465 - MPMX19_03148 0.87 -1.2 442,465 - MPMX19_03148 0.87 -0.1 442,465 - MPMX19_03148 0.87 +0.4 442,465 - MPMX19_03148 0.87 +0.8 442,465 - MPMX19_03148 0.87 -0.5 442,465 - MPMX19_03148 0.87 -0.5 442,465 - MPMX19_03148 0.87 +0.7 442,465 - MPMX19_03148 0.87 +1.4 442,465 - MPMX19_03148 0.87 -0.8 442,465 - MPMX19_03148 0.87 +1.6 442,465 - MPMX19_03148 0.87 -0.6 442,465 - MPMX19_03148 0.87 -1.0 442,465 - MPMX19_03148 0.87 +0.6 442,465 - MPMX19_03148 0.87 -0.4 442,465 - MPMX19_03148 0.87 +1.8 442,465 - MPMX19_03148 0.87 +0.7 442,465 - MPMX19_03148 0.87 -0.3 442,474 - MPMX19_03148 0.88 +0.1 442,492 - MPMX19_03148 0.89 +1.1 442,497 + MPMX19_03148 0.89 -0.8 442,497 + MPMX19_03148 0.89 +0.8 442,497 + MPMX19_03148 0.89 -0.9 442,498 - MPMX19_03148 0.89 -1.3 442,498 - MPMX19_03148 0.89 -0.9 442,498 - MPMX19_03148 0.89 -2.4 442,656 + -0.5 442,656 + -0.2 442,656 + -0.2 442,657 - -2.4 442,678 + -1.0 442,678 + +0.2 442,678 + -2.6 442,679 - +0.2 442,679 - -0.7 442,679 - -0.1 442,679 - +0.6 442,949 + MPMX19_03149 0.34 -0.3 442,949 + MPMX19_03149 0.34 -1.6 442,949 + MPMX19_03149 0.34 -0.0 442,949 + MPMX19_03149 0.34 -1.6 442,949 + MPMX19_03149 0.34 -0.2 442,949 + MPMX19_03149 0.34 +0.4 442,949 + MPMX19_03149 0.34 +0.8 442,949 + MPMX19_03149 0.34 +1.1 442,949 + MPMX19_03149 0.34 +0.1 442,949 + MPMX19_03149 0.34 -0.2 442,949 + MPMX19_03149 0.34 -1.1 442,949 + MPMX19_03149 0.34 -2.1 442,950 - MPMX19_03149 0.34 -0.5 442,950 - MPMX19_03149 0.34 -0.1 442,950 - MPMX19_03149 0.34 -0.2 442,950 - MPMX19_03149 0.34 +0.2 442,950 - MPMX19_03149 0.34 -0.0 442,950 - MPMX19_03149 0.34 +0.3 442,950 - MPMX19_03149 0.34 -0.8 442,950 - MPMX19_03149 0.34 +0.9 442,950 - MPMX19_03149 0.34 -0.4 442,950 - MPMX19_03149 0.34 -0.2 442,950 - MPMX19_03149 0.34 -0.4 443,135 + MPMX19_03149 0.60 +0.4 443,135 + MPMX19_03149 0.60 -0.9 443,135 + MPMX19_03149 0.60 -0.2 443,136 - MPMX19_03149 0.60 +1.0 443,136 - MPMX19_03149 0.60 +0.0 443,136 - MPMX19_03149 0.60 +0.4 443,136 - MPMX19_03149 0.60 -1.1 443,136 - MPMX19_03149 0.60 -0.2 443,141 + MPMX19_03149 0.61 +0.2 443,396 + -0.9 443,396 + +0.5 443,396 + +0.6 443,396 + -1.5 443,397 - -0.1 443,397 - -1.4 443,397 - -0.4 443,397 - +0.8 443,397 - -0.9 443,397 - +0.8 443,397 - +0.7 443,397 - +0.9 443,639 - MPMX19_03150 0.15 +0.6 443,731 + MPMX19_03150 0.22 -1.4 443,731 + MPMX19_03150 0.22 -1.4 443,731 + MPMX19_03150 0.22 -0.3 443,732 - MPMX19_03150 0.22 -0.9 443,732 - MPMX19_03150 0.22 +0.1 443,732 - MPMX19_03150 0.22 -0.4 443,732 - MPMX19_03150 0.22 -0.6 443,732 - MPMX19_03150 0.22 +0.4 443,732 - MPMX19_03150 0.22 +1.1 443,887 + MPMX19_03150 0.33 -2.9 443,887 + MPMX19_03150 0.33 -0.1 443,888 - MPMX19_03150 0.33 +0.4 443,962 + MPMX19_03150 0.38 +1.0 443,962 + MPMX19_03150 0.38 -0.2 443,962 + MPMX19_03150 0.38 -1.0 443,963 - MPMX19_03150 0.38 +0.1 443,963 - MPMX19_03150 0.38 +0.1 443,963 - MPMX19_03150 0.38 -2.3 443,963 - MPMX19_03150 0.38 -0.1 444,130 + MPMX19_03150 0.49 -0.5 444,130 + MPMX19_03150 0.49 -0.1 444,130 + MPMX19_03150 0.49 -1.7 444,130 + MPMX19_03150 0.49 -0.9 444,130 + MPMX19_03150 0.49 -1.1 444,130 + MPMX19_03150 0.49 +2.4 444,130 + MPMX19_03150 0.49 -0.7 444,130 + MPMX19_03150 0.49 -3.0 444,130 + MPMX19_03150 0.49 -1.0 444,131 - MPMX19_03150 0.50 +0.1 444,131 - MPMX19_03150 0.50 -0.8 444,131 - MPMX19_03150 0.50 -1.0 444,131 - MPMX19_03150 0.50 -1.4 444,131 - MPMX19_03150 0.50 -1.0 444,131 - MPMX19_03150 0.50 -0.5 444,131 - MPMX19_03150 0.50 +1.5 444,131 - MPMX19_03150 0.50 -1.2 444,131 - MPMX19_03150 0.50 +0.5 444,131 - MPMX19_03150 0.50 -0.6 444,131 - MPMX19_03150 0.50 -0.6 444,131 - MPMX19_03150 0.50 -0.9 444,131 - MPMX19_03150 0.50 +0.6 444,398 - MPMX19_03150 0.68 -0.5 444,442 + MPMX19_03150 0.71 -1.0 444,442 + MPMX19_03150 0.71 -0.5 444,442 + MPMX19_03150 0.71 +0.5 444,442 + MPMX19_03150 0.71 +0.4 444,442 + MPMX19_03150 0.71 -0.2 444,443 - MPMX19_03150 0.71 -1.0 444,443 - MPMX19_03150 0.71 -0.9 444,443 - MPMX19_03150 0.71 -1.0 444,443 - MPMX19_03150 0.71 -0.5 444,454 + MPMX19_03150 0.72 +0.1 444,454 + MPMX19_03150 0.72 +0.3 444,454 + MPMX19_03150 0.72 -0.3 444,454 + MPMX19_03150 0.72 -0.1 444,454 + MPMX19_03150 0.72 +0.1 444,454 + MPMX19_03150 0.72 -0.7 444,454 + MPMX19_03150 0.72 -0.5 444,454 + MPMX19_03150 0.72 +0.6 444,454 + MPMX19_03150 0.72 +0.4 444,454 + MPMX19_03150 0.72 -0.0 444,454 + MPMX19_03150 0.72 +0.9 444,454 + MPMX19_03150 0.72 +0.8 444,454 + MPMX19_03150 0.72 -0.2 444,455 - MPMX19_03150 0.72 +1.4 444,455 - MPMX19_03150 0.72 +0.5 444,455 - MPMX19_03150 0.72 +0.7 444,455 - MPMX19_03150 0.72 +0.1 444,455 - MPMX19_03150 0.72 -0.9 444,455 - MPMX19_03150 0.72 -1.7 444,455 - MPMX19_03150 0.72 +1.5 444,455 - MPMX19_03150 0.72 -0.5 444,455 - MPMX19_03150 0.72 +0.5 444,455 - MPMX19_03150 0.72 +0.5 444,455 - MPMX19_03150 0.72 -2.9 444,455 - MPMX19_03150 0.72 -2.0 445,233 + MPMX19_03151 0.33 -0.4 445,233 + MPMX19_03151 0.33 +0.4 445,233 + MPMX19_03151 0.33 +0.2 445,233 + MPMX19_03151 0.33 +2.1 445,233 + MPMX19_03151 0.33 -0.4 445,233 + MPMX19_03151 0.33 +0.7 445,233 + MPMX19_03151 0.33 -0.9 445,233 + MPMX19_03151 0.33 -0.8 445,233 + MPMX19_03151 0.33 -0.8 445,234 - MPMX19_03151 0.33 -0.4 445,234 - MPMX19_03151 0.33 +0.8 445,234 - MPMX19_03151 0.33 -1.4 445,234 - MPMX19_03151 0.33 -1.4 445,234 - MPMX19_03151 0.33 -0.3 445,234 - MPMX19_03151 0.33 -0.7 445,234 - MPMX19_03151 0.33 -0.4 445,234 - MPMX19_03151 0.33 +1.1 445,281 + MPMX19_03151 0.37 -0.1 445,281 + MPMX19_03151 0.37 -0.5 445,281 + MPMX19_03151 0.37 -2.4 445,281 + MPMX19_03151 0.37 +0.9 445,281 + MPMX19_03151 0.37 +1.1 445,281 + MPMX19_03151 0.37 -1.8 445,282 - MPMX19_03151 0.37 -2.1 445,282 - MPMX19_03151 0.37 -0.3 445,282 - MPMX19_03151 0.37 -0.4 445,282 - MPMX19_03151 0.37 -0.7 445,282 - MPMX19_03151 0.37 +0.1 445,282 - MPMX19_03151 0.37 +0.1 445,282 - MPMX19_03151 0.37 -0.6 445,599 + MPMX19_03151 0.65 -0.7 445,599 + MPMX19_03151 0.65 -0.2 445,599 + MPMX19_03151 0.65 -1.6 445,599 + MPMX19_03151 0.65 +0.3 445,600 - MPMX19_03151 0.65 -0.5 445,600 - MPMX19_03151 0.65 +0.4 445,600 - MPMX19_03151 0.65 -0.3 445,815 + MPMX19_03151 0.83 -0.5 445,816 - MPMX19_03151 0.83 +1.1 445,816 - MPMX19_03151 0.83 +0.7 445,816 - MPMX19_03151 0.83 -0.2
Or see this region's nucleotide sequence