Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03122 and MPMX19_03123 are separated by 59 nucleotides MPMX19_03123 and MPMX19_03124 overlap by 4 nucleotides MPMX19_03124 and MPMX19_03125 are separated by 16 nucleotides
MPMX19_03122: MPMX19_03122 - [Citrate [pro-3S]-lyase] ligase, at 410,045 to 411,163
_03122
MPMX19_03123: MPMX19_03123 - Citrate lyase acyl carrier protein, at 411,223 to 411,519
_03123
MPMX19_03124: MPMX19_03124 - Citrate lyase subunit beta, at 411,516 to 412,388
_03124
MPMX19_03125: MPMX19_03125 - Citrate lyase alpha chain, at 412,405 to 413,907
_03125
Position (kb) 411
412
413 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 410.547 kb on - strand, within MPMX19_03122 at 410.547 kb on - strand, within MPMX19_03122 at 410.547 kb on - strand, within MPMX19_03122 at 410.547 kb on - strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.729 kb on + strand, within MPMX19_03122 at 410.729 kb on + strand, within MPMX19_03122 at 410.730 kb on - strand, within MPMX19_03122 at 410.730 kb on - strand, within MPMX19_03122 at 410.730 kb on - strand, within MPMX19_03122 at 410.870 kb on + strand, within MPMX19_03122 at 410.870 kb on + strand, within MPMX19_03122 at 410.871 kb on - strand, within MPMX19_03122 at 410.871 kb on - strand, within MPMX19_03122 at 411.068 kb on + strand at 411.068 kb on + strand at 411.068 kb on + strand at 411.068 kb on + strand at 411.068 kb on + strand at 411.068 kb on + strand at 411.068 kb on + strand at 411.068 kb on + strand at 411.068 kb on + strand at 411.068 kb on + strand at 411.069 kb on - strand at 411.069 kb on - strand at 411.069 kb on - strand at 411.069 kb on - strand at 411.069 kb on - strand at 411.284 kb on + strand, within MPMX19_03123 at 411.284 kb on + strand, within MPMX19_03123 at 411.284 kb on + strand, within MPMX19_03123 at 411.285 kb on - strand, within MPMX19_03123 at 411.285 kb on - strand, within MPMX19_03123 at 411.585 kb on + strand at 411.585 kb on + strand at 411.585 kb on + strand at 411.585 kb on + strand at 411.585 kb on + strand at 411.585 kb on + strand at 411.585 kb on + strand at 411.586 kb on - strand at 411.586 kb on - strand at 411.586 kb on - strand at 411.586 kb on - strand at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.985 kb on - strand, within MPMX19_03124 at 411.985 kb on - strand, within MPMX19_03124 at 411.985 kb on - strand, within MPMX19_03124 at 411.985 kb on - strand, within MPMX19_03124 at 411.985 kb on - strand, within MPMX19_03124 at 411.985 kb on - strand, within MPMX19_03124 at 411.985 kb on - strand, within MPMX19_03124 at 412.032 kb on + strand, within MPMX19_03124 at 412.032 kb on + strand, within MPMX19_03124 at 412.032 kb on + strand, within MPMX19_03124 at 412.032 kb on + strand, within MPMX19_03124 at 412.032 kb on + strand, within MPMX19_03124 at 412.033 kb on - strand, within MPMX19_03124 at 412.033 kb on - strand, within MPMX19_03124 at 412.033 kb on - strand, within MPMX19_03124 at 412.033 kb on - strand, within MPMX19_03124 at 412.033 kb on - strand, within MPMX19_03124 at 412.212 kb on + strand, within MPMX19_03124 at 412.212 kb on + strand, within MPMX19_03124 at 412.239 kb on + strand, within MPMX19_03124 at 412.239 kb on + strand, within MPMX19_03124 at 412.239 kb on + strand, within MPMX19_03124 at 412.240 kb on - strand, within MPMX19_03124 at 412.240 kb on - strand, within MPMX19_03124 at 412.240 kb on - strand, within MPMX19_03124 at 412.474 kb on + strand at 412.474 kb on + strand at 412.475 kb on - strand at 412.704 kb on + strand, within MPMX19_03125 at 412.704 kb on + strand, within MPMX19_03125 at 412.732 kb on + strand, within MPMX19_03125 at 412.732 kb on + strand, within MPMX19_03125 at 412.732 kb on + strand, within MPMX19_03125 at 412.732 kb on + strand, within MPMX19_03125 at 412.732 kb on + strand, within MPMX19_03125 at 412.732 kb on + strand, within MPMX19_03125 at 412.732 kb on + strand, within MPMX19_03125 at 412.732 kb on + strand, within MPMX19_03125 at 412.733 kb on - strand, within MPMX19_03125 at 412.733 kb on - strand, within MPMX19_03125 at 412.733 kb on - strand, within MPMX19_03125 at 412.733 kb on - strand, within MPMX19_03125 at 412.733 kb on - strand, within MPMX19_03125 at 412.733 kb on - strand, within MPMX19_03125 at 412.733 kb on - strand, within MPMX19_03125 at 412.733 kb on - strand, within MPMX19_03125 at 412.733 kb on - strand, within MPMX19_03125 at 412.733 kb on - strand, within MPMX19_03125 at 412.733 kb on - strand, within MPMX19_03125 at 412.733 kb on - strand, within MPMX19_03125 at 412.733 kb on - strand, within MPMX19_03125 at 412.848 kb on + strand, within MPMX19_03125 at 412.848 kb on + strand, within MPMX19_03125 at 412.848 kb on + strand, within MPMX19_03125 at 412.848 kb on + strand, within MPMX19_03125 at 412.848 kb on + strand, within MPMX19_03125 at 412.848 kb on + strand, within MPMX19_03125 at 412.848 kb on + strand, within MPMX19_03125 at 412.848 kb on + strand, within MPMX19_03125 at 412.849 kb on - strand, within MPMX19_03125 at 412.942 kb on + strand, within MPMX19_03125 at 412.942 kb on + strand, within MPMX19_03125 at 413.047 kb on + strand, within MPMX19_03125 at 413.047 kb on + strand, within MPMX19_03125 at 413.047 kb on + strand, within MPMX19_03125 at 413.047 kb on + strand, within MPMX19_03125 at 413.047 kb on + strand, within MPMX19_03125 at 413.048 kb on - strand, within MPMX19_03125 at 413.048 kb on - strand, within MPMX19_03125 at 413.048 kb on - strand, within MPMX19_03125 at 413.048 kb on - strand, within MPMX19_03125 at 413.048 kb on - strand, within MPMX19_03125 at 413.048 kb on - strand, within MPMX19_03125 at 413.048 kb on - strand, within MPMX19_03125 at 413.048 kb on - strand, within MPMX19_03125 at 413.162 kb on + strand, within MPMX19_03125 at 413.162 kb on + strand, within MPMX19_03125 at 413.162 kb on + strand, within MPMX19_03125 at 413.162 kb on + strand, within MPMX19_03125 at 413.162 kb on + strand, within MPMX19_03125 at 413.163 kb on - strand, within MPMX19_03125 at 413.163 kb on - strand, within MPMX19_03125 at 413.163 kb on - strand, within MPMX19_03125 at 413.163 kb on - strand, within MPMX19_03125 at 413.163 kb on - strand, within MPMX19_03125 at 413.163 kb on - strand, within MPMX19_03125 at 413.163 kb on - strand, within MPMX19_03125 at 413.163 kb on - strand, within MPMX19_03125 at 413.163 kb on - strand, within MPMX19_03125 at 413.163 kb on - strand, within MPMX19_03125 at 413.173 kb on + strand, within MPMX19_03125 at 413.174 kb on - strand, within MPMX19_03125 at 413.248 kb on + strand, within MPMX19_03125 at 413.248 kb on + strand, within MPMX19_03125 at 413.248 kb on + strand, within MPMX19_03125 at 413.248 kb on + strand, within MPMX19_03125 at 413.248 kb on + strand, within MPMX19_03125 at 413.248 kb on + strand, within MPMX19_03125 at 413.248 kb on + strand, within MPMX19_03125 at 413.248 kb on + strand, within MPMX19_03125 at 413.248 kb on + strand, within MPMX19_03125 at 413.249 kb on - strand, within MPMX19_03125 at 413.249 kb on - strand, within MPMX19_03125 at 413.249 kb on - strand, within MPMX19_03125 at 413.249 kb on - strand, within MPMX19_03125 at 413.249 kb on - strand, within MPMX19_03125
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 410,547 - MPMX19_03122 0.45 -0.5 410,547 - MPMX19_03122 0.45 -1.1 410,547 - MPMX19_03122 0.45 +0.7 410,547 - MPMX19_03122 0.45 -0.9 410,699 + MPMX19_03122 0.58 -0.5 410,699 + MPMX19_03122 0.58 -1.2 410,699 + MPMX19_03122 0.58 -0.7 410,699 + MPMX19_03122 0.58 -0.9 410,699 + MPMX19_03122 0.58 +0.5 410,699 + MPMX19_03122 0.58 -0.4 410,699 + MPMX19_03122 0.58 -1.0 410,699 + MPMX19_03122 0.58 -1.7 410,699 + MPMX19_03122 0.58 -0.6 410,699 + MPMX19_03122 0.58 -1.2 410,699 + MPMX19_03122 0.58 -1.3 410,699 + MPMX19_03122 0.58 -1.2 410,699 + MPMX19_03122 0.58 +0.1 410,699 + MPMX19_03122 0.58 -0.7 410,699 + MPMX19_03122 0.58 -0.6 410,699 + MPMX19_03122 0.58 -0.5 410,699 + MPMX19_03122 0.58 -0.7 410,699 + MPMX19_03122 0.58 -0.9 410,699 + MPMX19_03122 0.58 +1.3 410,699 + MPMX19_03122 0.58 -0.9 410,699 + MPMX19_03122 0.58 +1.0 410,699 + MPMX19_03122 0.58 +1.7 410,699 + MPMX19_03122 0.58 -0.5 410,699 + MPMX19_03122 0.58 -0.8 410,699 + MPMX19_03122 0.58 -0.9 410,700 - MPMX19_03122 0.59 +1.6 410,700 - MPMX19_03122 0.59 -0.6 410,700 - MPMX19_03122 0.59 +0.4 410,700 - MPMX19_03122 0.59 -1.3 410,700 - MPMX19_03122 0.59 -1.0 410,700 - MPMX19_03122 0.59 +0.1 410,700 - MPMX19_03122 0.59 -1.1 410,700 - MPMX19_03122 0.59 -0.8 410,700 - MPMX19_03122 0.59 -1.6 410,700 - MPMX19_03122 0.59 -0.5 410,700 - MPMX19_03122 0.59 -0.2 410,700 - MPMX19_03122 0.59 +0.3 410,700 - MPMX19_03122 0.59 +0.1 410,700 - MPMX19_03122 0.59 -1.6 410,700 - MPMX19_03122 0.59 -1.3 410,700 - MPMX19_03122 0.59 +1.1 410,700 - MPMX19_03122 0.59 -2.1 410,700 - MPMX19_03122 0.59 -1.3 410,700 - MPMX19_03122 0.59 +2.1 410,700 - MPMX19_03122 0.59 +0.1 410,700 - MPMX19_03122 0.59 -1.0 410,700 - MPMX19_03122 0.59 -0.0 410,700 - MPMX19_03122 0.59 -0.2 410,729 + MPMX19_03122 0.61 -0.2 410,729 + MPMX19_03122 0.61 +0.4 410,730 - MPMX19_03122 0.61 -1.7 410,730 - MPMX19_03122 0.61 -1.2 410,730 - MPMX19_03122 0.61 -0.3 410,870 + MPMX19_03122 0.74 +0.9 410,870 + MPMX19_03122 0.74 +1.1 410,871 - MPMX19_03122 0.74 -1.2 410,871 - MPMX19_03122 0.74 -0.1 411,068 + -1.0 411,068 + -0.9 411,068 + -0.4 411,068 + +0.5 411,068 + -1.1 411,068 + -0.0 411,068 + -2.6 411,068 + +1.8 411,068 + -0.8 411,068 + +0.1 411,069 - +0.8 411,069 - -1.0 411,069 - -0.7 411,069 - -1.3 411,069 - -1.9 411,284 + MPMX19_03123 0.21 -1.3 411,284 + MPMX19_03123 0.21 -0.3 411,284 + MPMX19_03123 0.21 +0.8 411,285 - MPMX19_03123 0.21 +0.1 411,285 - MPMX19_03123 0.21 +0.4 411,585 + -0.2 411,585 + -0.5 411,585 + -1.2 411,585 + -0.1 411,585 + +0.3 411,585 + +0.5 411,585 + -0.0 411,586 - -0.8 411,586 - -0.5 411,586 - -0.5 411,586 - +0.4 411,984 + MPMX19_03124 0.54 -0.3 411,984 + MPMX19_03124 0.54 -1.3 411,984 + MPMX19_03124 0.54 +0.2 411,984 + MPMX19_03124 0.54 -0.5 411,984 + MPMX19_03124 0.54 -1.5 411,984 + MPMX19_03124 0.54 +0.1 411,984 + MPMX19_03124 0.54 +0.2 411,984 + MPMX19_03124 0.54 -2.2 411,984 + MPMX19_03124 0.54 -0.7 411,984 + MPMX19_03124 0.54 -0.6 411,985 - MPMX19_03124 0.54 +0.4 411,985 - MPMX19_03124 0.54 -0.5 411,985 - MPMX19_03124 0.54 -1.1 411,985 - MPMX19_03124 0.54 -2.1 411,985 - MPMX19_03124 0.54 -1.6 411,985 - MPMX19_03124 0.54 +0.9 411,985 - MPMX19_03124 0.54 -0.7 412,032 + MPMX19_03124 0.59 +0.2 412,032 + MPMX19_03124 0.59 -1.2 412,032 + MPMX19_03124 0.59 -1.3 412,032 + MPMX19_03124 0.59 -2.1 412,032 + MPMX19_03124 0.59 -0.7 412,033 - MPMX19_03124 0.59 -2.6 412,033 - MPMX19_03124 0.59 -1.9 412,033 - MPMX19_03124 0.59 +0.5 412,033 - MPMX19_03124 0.59 -1.8 412,033 - MPMX19_03124 0.59 -1.5 412,212 + MPMX19_03124 0.80 -0.3 412,212 + MPMX19_03124 0.80 -1.3 412,239 + MPMX19_03124 0.83 +0.3 412,239 + MPMX19_03124 0.83 -3.2 412,239 + MPMX19_03124 0.83 -0.9 412,240 - MPMX19_03124 0.83 -1.1 412,240 - MPMX19_03124 0.83 -1.0 412,240 - MPMX19_03124 0.83 -1.7 412,474 + -0.5 412,474 + +0.3 412,475 - +0.1 412,704 + MPMX19_03125 0.20 +0.1 412,704 + MPMX19_03125 0.20 -0.5 412,732 + MPMX19_03125 0.22 +0.1 412,732 + MPMX19_03125 0.22 +0.5 412,732 + MPMX19_03125 0.22 -0.3 412,732 + MPMX19_03125 0.22 -1.8 412,732 + MPMX19_03125 0.22 +0.1 412,732 + MPMX19_03125 0.22 -0.9 412,732 + MPMX19_03125 0.22 +0.7 412,732 + MPMX19_03125 0.22 -1.1 412,733 - MPMX19_03125 0.22 -0.0 412,733 - MPMX19_03125 0.22 -0.5 412,733 - MPMX19_03125 0.22 -1.2 412,733 - MPMX19_03125 0.22 -2.6 412,733 - MPMX19_03125 0.22 -2.2 412,733 - MPMX19_03125 0.22 -1.1 412,733 - MPMX19_03125 0.22 -0.3 412,733 - MPMX19_03125 0.22 -1.2 412,733 - MPMX19_03125 0.22 -0.7 412,733 - MPMX19_03125 0.22 -1.0 412,733 - MPMX19_03125 0.22 -1.5 412,733 - MPMX19_03125 0.22 -1.1 412,733 - MPMX19_03125 0.22 +0.1 412,848 + MPMX19_03125 0.29 +0.2 412,848 + MPMX19_03125 0.29 -0.7 412,848 + MPMX19_03125 0.29 +0.1 412,848 + MPMX19_03125 0.29 +0.3 412,848 + MPMX19_03125 0.29 -0.4 412,848 + MPMX19_03125 0.29 -0.0 412,848 + MPMX19_03125 0.29 -0.2 412,848 + MPMX19_03125 0.29 +0.2 412,849 - MPMX19_03125 0.30 -1.4 412,942 + MPMX19_03125 0.36 -0.7 412,942 + MPMX19_03125 0.36 -0.1 413,047 + MPMX19_03125 0.43 +0.4 413,047 + MPMX19_03125 0.43 -0.0 413,047 + MPMX19_03125 0.43 +0.4 413,047 + MPMX19_03125 0.43 +0.3 413,047 + MPMX19_03125 0.43 +1.8 413,048 - MPMX19_03125 0.43 -1.3 413,048 - MPMX19_03125 0.43 -1.8 413,048 - MPMX19_03125 0.43 +0.7 413,048 - MPMX19_03125 0.43 +0.9 413,048 - MPMX19_03125 0.43 -0.3 413,048 - MPMX19_03125 0.43 -1.1 413,048 - MPMX19_03125 0.43 -0.9 413,048 - MPMX19_03125 0.43 +0.3 413,162 + MPMX19_03125 0.50 -1.9 413,162 + MPMX19_03125 0.50 -0.9 413,162 + MPMX19_03125 0.50 -1.1 413,162 + MPMX19_03125 0.50 -0.5 413,162 + MPMX19_03125 0.50 +0.1 413,163 - MPMX19_03125 0.50 -1.6 413,163 - MPMX19_03125 0.50 -0.1 413,163 - MPMX19_03125 0.50 +0.8 413,163 - MPMX19_03125 0.50 -0.8 413,163 - MPMX19_03125 0.50 +0.8 413,163 - MPMX19_03125 0.50 -0.7 413,163 - MPMX19_03125 0.50 -0.7 413,163 - MPMX19_03125 0.50 -1.7 413,163 - MPMX19_03125 0.50 -1.4 413,163 - MPMX19_03125 0.50 -0.2 413,173 + MPMX19_03125 0.51 -0.3 413,174 - MPMX19_03125 0.51 +1.2 413,248 + MPMX19_03125 0.56 -0.6 413,248 + MPMX19_03125 0.56 -1.0 413,248 + MPMX19_03125 0.56 -0.8 413,248 + MPMX19_03125 0.56 +1.3 413,248 + MPMX19_03125 0.56 -1.2 413,248 + MPMX19_03125 0.56 +1.7 413,248 + MPMX19_03125 0.56 -1.7 413,248 + MPMX19_03125 0.56 +0.5 413,248 + MPMX19_03125 0.56 -0.6 413,249 - MPMX19_03125 0.56 -0.9 413,249 - MPMX19_03125 0.56 +0.3 413,249 - MPMX19_03125 0.56 -0.5 413,249 - MPMX19_03125 0.56 -0.9 413,249 - MPMX19_03125 0.56 -0.3
Or see this region's nucleotide sequence