Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03103 and MPMX19_03104 are separated by 21 nucleotides MPMX19_03104 and MPMX19_03105 are separated by 5 nucleotides
MPMX19_03103: MPMX19_03103 - hypothetical protein, at 372,784 to 375,354
_03103
MPMX19_03104: MPMX19_03104 - hypothetical protein, at 375,376 to 376,509
_03104
MPMX19_03105: MPMX19_03105 - hypothetical protein, at 376,515 to 386,258
_03105
Position (kb) 375
376
377 Strain fitness (log2 ratio) -2
-1
0
1
2 at 374.811 kb on + strand, within MPMX19_03103 at 374.812 kb on - strand, within MPMX19_03103 at 374.812 kb on - strand, within MPMX19_03103 at 374.812 kb on - strand, within MPMX19_03103 at 374.812 kb on - strand, within MPMX19_03103 at 374.854 kb on + strand, within MPMX19_03103 at 374.961 kb on + strand, within MPMX19_03103 at 374.962 kb on - strand, within MPMX19_03103 at 374.962 kb on - strand, within MPMX19_03103 at 374.962 kb on - strand, within MPMX19_03103 at 375.005 kb on + strand, within MPMX19_03103 at 375.006 kb on - strand, within MPMX19_03103 at 375.157 kb on + strand at 375.157 kb on + strand at 375.157 kb on + strand at 375.157 kb on + strand at 375.158 kb on - strand at 375.158 kb on - strand at 375.158 kb on - strand at 375.158 kb on - strand at 375.532 kb on + strand, within MPMX19_03104 at 375.533 kb on - strand, within MPMX19_03104 at 375.533 kb on - strand, within MPMX19_03104 at 375.745 kb on + strand, within MPMX19_03104 at 375.745 kb on + strand, within MPMX19_03104 at 375.745 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.823 kb on + strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 375.824 kb on - strand, within MPMX19_03104 at 376.201 kb on + strand, within MPMX19_03104 at 376.201 kb on + strand, within MPMX19_03104 at 376.202 kb on - strand, within MPMX19_03104 at 376.202 kb on - strand, within MPMX19_03104 at 376.749 kb on + strand at 376.749 kb on + strand at 376.749 kb on + strand at 376.749 kb on + strand at 376.749 kb on + strand at 376.749 kb on + strand at 376.749 kb on + strand at 376.750 kb on - strand at 376.750 kb on - strand at 376.750 kb on - strand at 376.750 kb on - strand at 376.956 kb on + strand at 376.956 kb on + strand at 376.956 kb on + strand at 376.956 kb on + strand at 376.956 kb on + strand at 376.956 kb on + strand at 377.034 kb on + strand at 377.034 kb on + strand at 377.034 kb on + strand at 377.034 kb on + strand at 377.034 kb on + strand at 377.034 kb on + strand at 377.034 kb on + strand at 377.034 kb on + strand at 377.034 kb on + strand at 377.034 kb on + strand at 377.034 kb on + strand at 377.034 kb on + strand at 377.034 kb on + strand at 377.034 kb on + strand at 377.034 kb on + strand at 377.034 kb on + strand at 377.034 kb on + strand at 377.035 kb on - strand at 377.035 kb on - strand at 377.035 kb on - strand at 377.035 kb on - strand at 377.035 kb on - strand at 377.035 kb on - strand at 377.035 kb on - strand at 377.035 kb on - strand at 377.035 kb on - strand at 377.035 kb on - strand at 377.035 kb on - strand at 377.035 kb on - strand at 377.035 kb on - strand at 377.478 kb on + strand at 377.478 kb on + strand at 377.478 kb on + strand at 377.478 kb on + strand at 377.478 kb on + strand at 377.478 kb on + strand at 377.479 kb on - strand at 377.479 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 374,811 + MPMX19_03103 0.79 +1.1 374,812 - MPMX19_03103 0.79 -0.9 374,812 - MPMX19_03103 0.79 +0.3 374,812 - MPMX19_03103 0.79 -0.9 374,812 - MPMX19_03103 0.79 +0.2 374,854 + MPMX19_03103 0.81 -0.6 374,961 + MPMX19_03103 0.85 +1.2 374,962 - MPMX19_03103 0.85 -0.3 374,962 - MPMX19_03103 0.85 -1.7 374,962 - MPMX19_03103 0.85 -1.0 375,005 + MPMX19_03103 0.86 +0.8 375,006 - MPMX19_03103 0.86 +0.9 375,157 + +0.3 375,157 + -0.2 375,157 + +0.5 375,157 + -1.0 375,158 - -0.2 375,158 - +0.1 375,158 - +1.1 375,158 - +0.2 375,532 + MPMX19_03104 0.14 -0.3 375,533 - MPMX19_03104 0.14 +0.0 375,533 - MPMX19_03104 0.14 +0.9 375,745 + MPMX19_03104 0.33 -2.0 375,745 + MPMX19_03104 0.33 -1.6 375,745 + MPMX19_03104 0.33 -0.7 375,823 + MPMX19_03104 0.39 +0.8 375,823 + MPMX19_03104 0.39 -0.7 375,823 + MPMX19_03104 0.39 -1.3 375,823 + MPMX19_03104 0.39 -0.1 375,823 + MPMX19_03104 0.39 +0.3 375,823 + MPMX19_03104 0.39 +0.0 375,823 + MPMX19_03104 0.39 +1.4 375,823 + MPMX19_03104 0.39 -1.6 375,823 + MPMX19_03104 0.39 +0.7 375,823 + MPMX19_03104 0.39 -1.0 375,823 + MPMX19_03104 0.39 +0.2 375,823 + MPMX19_03104 0.39 -2.0 375,823 + MPMX19_03104 0.39 -0.6 375,823 + MPMX19_03104 0.39 +0.5 375,823 + MPMX19_03104 0.39 -1.3 375,823 + MPMX19_03104 0.39 -0.7 375,823 + MPMX19_03104 0.39 -0.2 375,823 + MPMX19_03104 0.39 -1.3 375,824 - MPMX19_03104 0.40 -1.6 375,824 - MPMX19_03104 0.40 +0.3 375,824 - MPMX19_03104 0.40 -1.5 375,824 - MPMX19_03104 0.40 -1.0 375,824 - MPMX19_03104 0.40 -0.5 375,824 - MPMX19_03104 0.40 +0.5 375,824 - MPMX19_03104 0.40 -1.0 375,824 - MPMX19_03104 0.40 -1.9 375,824 - MPMX19_03104 0.40 -0.5 375,824 - MPMX19_03104 0.40 -1.4 375,824 - MPMX19_03104 0.40 -0.4 375,824 - MPMX19_03104 0.40 -0.6 375,824 - MPMX19_03104 0.40 -0.4 375,824 - MPMX19_03104 0.40 -0.8 375,824 - MPMX19_03104 0.40 +0.5 375,824 - MPMX19_03104 0.40 +0.5 375,824 - MPMX19_03104 0.40 -0.5 375,824 - MPMX19_03104 0.40 -1.2 375,824 - MPMX19_03104 0.40 -0.2 375,824 - MPMX19_03104 0.40 +1.1 375,824 - MPMX19_03104 0.40 -0.7 375,824 - MPMX19_03104 0.40 -2.5 375,824 - MPMX19_03104 0.40 +1.4 375,824 - MPMX19_03104 0.40 -1.6 375,824 - MPMX19_03104 0.40 -1.6 375,824 - MPMX19_03104 0.40 +0.7 375,824 - MPMX19_03104 0.40 +0.5 375,824 - MPMX19_03104 0.40 -1.6 376,201 + MPMX19_03104 0.73 +0.2 376,201 + MPMX19_03104 0.73 +0.3 376,202 - MPMX19_03104 0.73 -0.3 376,202 - MPMX19_03104 0.73 -0.3 376,749 + -1.7 376,749 + -1.2 376,749 + -1.0 376,749 + +0.7 376,749 + -0.2 376,749 + -0.9 376,749 + -1.0 376,750 - -0.6 376,750 - -1.2 376,750 - +0.8 376,750 - -0.8 376,956 + +0.1 376,956 + +0.0 376,956 + -1.3 376,956 + -0.2 376,956 + +0.4 376,956 + -2.0 377,034 + +0.7 377,034 + -0.1 377,034 + -0.1 377,034 + -0.7 377,034 + -0.2 377,034 + -1.8 377,034 + -1.9 377,034 + -2.3 377,034 + -0.9 377,034 + +0.1 377,034 + -0.8 377,034 + +1.1 377,034 + -1.1 377,034 + -0.7 377,034 + +0.1 377,034 + +0.8 377,034 + +0.3 377,035 - -0.5 377,035 - +0.3 377,035 - -1.6 377,035 - +2.1 377,035 - -0.3 377,035 - -0.6 377,035 - -1.0 377,035 - -0.7 377,035 - +0.5 377,035 - +0.1 377,035 - +0.1 377,035 - +0.1 377,035 - -0.0 377,478 + -0.5 377,478 + -0.7 377,478 + -0.3 377,478 + +0.5 377,478 + -0.0 377,478 + -1.5 377,479 - -0.2 377,479 - -0.5
Or see this region's nucleotide sequence