Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03102

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03100 and MPMX19_03101 are separated by 10 nucleotidesMPMX19_03101 and MPMX19_03102 are separated by 38 nucleotidesMPMX19_03102 and MPMX19_03103 are separated by 122 nucleotides MPMX19_03100: MPMX19_03100 - hypothetical protein, at 370,553 to 371,212 _03100 MPMX19_03101: MPMX19_03101 - hypothetical protein, at 371,223 to 371,885 _03101 MPMX19_03102: MPMX19_03102 - hypothetical protein, at 371,924 to 372,661 _03102 MPMX19_03103: MPMX19_03103 - hypothetical protein, at 372,784 to 375,354 _03103 Position (kb) 371 372 373Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.087 kb on + strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.088 kb on - strand, within MPMX19_03100at 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.203 kb on + strandat 371.204 kb on - strandat 371.204 kb on - strandat 371.204 kb on - strandat 371.204 kb on - strandat 371.204 kb on - strandat 371.204 kb on - strandat 371.204 kb on - strandat 371.204 kb on - strandat 371.235 kb on + strandat 371.235 kb on + strandat 371.235 kb on + strandat 371.235 kb on + strandat 371.235 kb on + strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.236 kb on - strandat 371.255 kb on + strandat 371.596 kb on - strand, within MPMX19_03101at 371.700 kb on + strand, within MPMX19_03101at 371.700 kb on + strand, within MPMX19_03101at 371.700 kb on + strand, within MPMX19_03101at 371.700 kb on + strand, within MPMX19_03101at 371.701 kb on - strand, within MPMX19_03101at 371.701 kb on - strand, within MPMX19_03101at 371.701 kb on - strand, within MPMX19_03101at 371.701 kb on - strand, within MPMX19_03101at 371.727 kb on + strand, within MPMX19_03101at 371.727 kb on + strand, within MPMX19_03101at 371.728 kb on - strand, within MPMX19_03101at 371.728 kb on - strand, within MPMX19_03101at 371.728 kb on - strand, within MPMX19_03101at 371.728 kb on - strand, within MPMX19_03101at 371.728 kb on - strand, within MPMX19_03101at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.071 kb on + strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.072 kb on - strand, within MPMX19_03102at 372.179 kb on + strand, within MPMX19_03102at 372.179 kb on + strand, within MPMX19_03102at 372.180 kb on - strand, within MPMX19_03102at 372.428 kb on + strand, within MPMX19_03102at 372.429 kb on - strand, within MPMX19_03102at 372.635 kb on + strandat 372.636 kb on - strandat 372.636 kb on - strandat 372.636 kb on - strandat 372.802 kb on + strandat 372.871 kb on + strandat 372.871 kb on + strandat 372.872 kb on - strandat 372.872 kb on - strandat 372.872 kb on - strandat 373.072 kb on + strand, within MPMX19_03103at 373.072 kb on + strand, within MPMX19_03103at 373.072 kb on + strand, within MPMX19_03103at 373.073 kb on - strand, within MPMX19_03103at 373.073 kb on - strand, within MPMX19_03103at 373.114 kb on + strand, within MPMX19_03103at 373.114 kb on + strand, within MPMX19_03103at 373.115 kb on - strand, within MPMX19_03103at 373.126 kb on + strand, within MPMX19_03103at 373.126 kb on + strand, within MPMX19_03103at 373.126 kb on + strand, within MPMX19_03103at 373.126 kb on + strand, within MPMX19_03103at 373.126 kb on + strand, within MPMX19_03103at 373.127 kb on - strand, within MPMX19_03103at 373.127 kb on - strand, within MPMX19_03103at 373.127 kb on - strand, within MPMX19_03103at 373.333 kb on + strand, within MPMX19_03103at 373.333 kb on + strand, within MPMX19_03103at 373.333 kb on + strand, within MPMX19_03103at 373.334 kb on - strand, within MPMX19_03103at 373.334 kb on - strand, within MPMX19_03103at 373.354 kb on + strand, within MPMX19_03103at 373.369 kb on + strand, within MPMX19_03103at 373.369 kb on + strand, within MPMX19_03103at 373.369 kb on + strand, within MPMX19_03103at 373.370 kb on - strand, within MPMX19_03103at 373.370 kb on - strand, within MPMX19_03103at 373.370 kb on - strand, within MPMX19_03103at 373.370 kb on - strand, within MPMX19_03103at 373.370 kb on - strand, within MPMX19_03103at 373.370 kb on - strand, within MPMX19_03103at 373.435 kb on + strand, within MPMX19_03103at 373.435 kb on + strand, within MPMX19_03103at 373.436 kb on - strand, within MPMX19_03103at 373.436 kb on - strand, within MPMX19_03103at 373.436 kb on - strand, within MPMX19_03103at 373.436 kb on - strand, within MPMX19_03103at 373.436 kb on - strand, within MPMX19_03103at 373.436 kb on - strand, within MPMX19_03103at 373.549 kb on + strand, within MPMX19_03103at 373.549 kb on + strand, within MPMX19_03103at 373.549 kb on + strand, within MPMX19_03103at 373.549 kb on + strand, within MPMX19_03103at 373.549 kb on + strand, within MPMX19_03103at 373.549 kb on + strand, within MPMX19_03103at 373.549 kb on + strand, within MPMX19_03103at 373.550 kb on - strand, within MPMX19_03103at 373.562 kb on - strand, within MPMX19_03103at 373.621 kb on + strand, within MPMX19_03103at 373.622 kb on - strand, within MPMX19_03103at 373.639 kb on + strand, within MPMX19_03103at 373.639 kb on + strand, within MPMX19_03103at 373.639 kb on + strand, within MPMX19_03103

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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371,087 + MPMX19_03100 0.81 +0.6
371,087 + MPMX19_03100 0.81 -0.3
371,087 + MPMX19_03100 0.81 -0.3
371,087 + MPMX19_03100 0.81 +2.5
371,087 + MPMX19_03100 0.81 -3.3
371,087 + MPMX19_03100 0.81 +2.1
371,087 + MPMX19_03100 0.81 +0.1
371,087 + MPMX19_03100 0.81 -0.4
371,088 - MPMX19_03100 0.81 +1.1
371,088 - MPMX19_03100 0.81 -0.7
371,088 - MPMX19_03100 0.81 -0.6
371,088 - MPMX19_03100 0.81 -0.7
371,088 - MPMX19_03100 0.81 -1.3
371,088 - MPMX19_03100 0.81 -2.7
371,088 - MPMX19_03100 0.81 -0.3
371,088 - MPMX19_03100 0.81 -1.7
371,203 + +0.6
371,203 + -0.4
371,203 + -1.1
371,203 + -0.2
371,203 + -1.0
371,203 + +0.3
371,203 + -1.9
371,203 + -1.0
371,203 + -1.0
371,203 + +0.6
371,203 + -1.9
371,204 - -0.9
371,204 - +0.1
371,204 - -0.2
371,204 - -0.4
371,204 - +0.4
371,204 - +1.1
371,204 - -0.1
371,204 - +0.8
371,235 + +0.1
371,235 + -0.3
371,235 + -0.6
371,235 + +0.5
371,235 + -0.9
371,236 - -0.3
371,236 - +0.6
371,236 - +0.3
371,236 - +2.1
371,236 - -0.1
371,236 - -1.2
371,236 - -1.5
371,236 - -1.4
371,236 - +0.0
371,236 - +0.9
371,236 - +0.0
371,236 - -0.2
371,255 + -0.9
371,596 - MPMX19_03101 0.56 -1.4
371,700 + MPMX19_03101 0.72 -0.0
371,700 + MPMX19_03101 0.72 +1.1
371,700 + MPMX19_03101 0.72 +0.6
371,700 + MPMX19_03101 0.72 -1.8
371,701 - MPMX19_03101 0.72 -0.3
371,701 - MPMX19_03101 0.72 -1.2
371,701 - MPMX19_03101 0.72 +0.6
371,701 - MPMX19_03101 0.72 -0.9
371,727 + MPMX19_03101 0.76 -1.0
371,727 + MPMX19_03101 0.76 -2.2
371,728 - MPMX19_03101 0.76 -0.7
371,728 - MPMX19_03101 0.76 -0.4
371,728 - MPMX19_03101 0.76 -0.6
371,728 - MPMX19_03101 0.76 -1.0
371,728 - MPMX19_03101 0.76 -0.6
372,071 + MPMX19_03102 0.20 +3.5
372,071 + MPMX19_03102 0.20 -0.5
372,071 + MPMX19_03102 0.20 +0.9
372,071 + MPMX19_03102 0.20 +0.3
372,071 + MPMX19_03102 0.20 +1.3
372,071 + MPMX19_03102 0.20 +1.1
372,071 + MPMX19_03102 0.20 -1.5
372,071 + MPMX19_03102 0.20 +0.7
372,071 + MPMX19_03102 0.20 -0.2
372,071 + MPMX19_03102 0.20 -0.5
372,071 + MPMX19_03102 0.20 +0.1
372,071 + MPMX19_03102 0.20 -0.3
372,071 + MPMX19_03102 0.20 -0.5
372,071 + MPMX19_03102 0.20 -1.4
372,071 + MPMX19_03102 0.20 +0.7
372,072 - MPMX19_03102 0.20 -1.0
372,072 - MPMX19_03102 0.20 -0.4
372,072 - MPMX19_03102 0.20 -0.6
372,072 - MPMX19_03102 0.20 +0.5
372,072 - MPMX19_03102 0.20 +0.9
372,072 - MPMX19_03102 0.20 -1.7
372,072 - MPMX19_03102 0.20 -0.9
372,072 - MPMX19_03102 0.20 +0.9
372,072 - MPMX19_03102 0.20 -1.2
372,072 - MPMX19_03102 0.20 -1.5
372,072 - MPMX19_03102 0.20 +0.2
372,072 - MPMX19_03102 0.20 -0.0
372,072 - MPMX19_03102 0.20 -1.9
372,072 - MPMX19_03102 0.20 +0.1
372,072 - MPMX19_03102 0.20 -1.0
372,072 - MPMX19_03102 0.20 -0.7
372,179 + MPMX19_03102 0.35 +2.0
372,179 + MPMX19_03102 0.35 -0.2
372,180 - MPMX19_03102 0.35 -0.6
372,428 + MPMX19_03102 0.68 +1.1
372,429 - MPMX19_03102 0.68 +0.3
372,635 + -1.9
372,636 - -0.7
372,636 - +0.9
372,636 - +1.1
372,802 + -0.2
372,871 + -1.5
372,871 + -0.5
372,872 - -1.2
372,872 - +1.0
372,872 - -0.4
373,072 + MPMX19_03103 0.11 -0.7
373,072 + MPMX19_03103 0.11 -1.5
373,072 + MPMX19_03103 0.11 -0.1
373,073 - MPMX19_03103 0.11 -1.2
373,073 - MPMX19_03103 0.11 +0.7
373,114 + MPMX19_03103 0.13 +1.7
373,114 + MPMX19_03103 0.13 -0.5
373,115 - MPMX19_03103 0.13 -1.2
373,126 + MPMX19_03103 0.13 +1.5
373,126 + MPMX19_03103 0.13 -1.3
373,126 + MPMX19_03103 0.13 -0.7
373,126 + MPMX19_03103 0.13 +0.5
373,126 + MPMX19_03103 0.13 +0.4
373,127 - MPMX19_03103 0.13 -0.9
373,127 - MPMX19_03103 0.13 +0.3
373,127 - MPMX19_03103 0.13 +0.3
373,333 + MPMX19_03103 0.21 -0.7
373,333 + MPMX19_03103 0.21 -0.0
373,333 + MPMX19_03103 0.21 +0.5
373,334 - MPMX19_03103 0.21 -0.9
373,334 - MPMX19_03103 0.21 -0.2
373,354 + MPMX19_03103 0.22 -0.5
373,369 + MPMX19_03103 0.23 -0.4
373,369 + MPMX19_03103 0.23 +0.5
373,369 + MPMX19_03103 0.23 +1.1
373,370 - MPMX19_03103 0.23 -0.5
373,370 - MPMX19_03103 0.23 -0.1
373,370 - MPMX19_03103 0.23 -0.4
373,370 - MPMX19_03103 0.23 +0.9
373,370 - MPMX19_03103 0.23 +0.3
373,370 - MPMX19_03103 0.23 -0.9
373,435 + MPMX19_03103 0.25 -0.2
373,435 + MPMX19_03103 0.25 +1.0
373,436 - MPMX19_03103 0.25 -0.9
373,436 - MPMX19_03103 0.25 -0.8
373,436 - MPMX19_03103 0.25 +1.4
373,436 - MPMX19_03103 0.25 +0.0
373,436 - MPMX19_03103 0.25 +0.4
373,436 - MPMX19_03103 0.25 +0.3
373,549 + MPMX19_03103 0.30 -1.2
373,549 + MPMX19_03103 0.30 +0.9
373,549 + MPMX19_03103 0.30 -0.7
373,549 + MPMX19_03103 0.30 +0.7
373,549 + MPMX19_03103 0.30 -1.1
373,549 + MPMX19_03103 0.30 +0.0
373,549 + MPMX19_03103 0.30 -2.6
373,550 - MPMX19_03103 0.30 +0.7
373,562 - MPMX19_03103 0.30 -0.5
373,621 + MPMX19_03103 0.33 -0.1
373,622 - MPMX19_03103 0.33 -2.0
373,639 + MPMX19_03103 0.33 -0.8
373,639 + MPMX19_03103 0.33 -0.7
373,639 + MPMX19_03103 0.33 +0.6

Or see this region's nucleotide sequence