Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03098

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03095 and MPMX19_03096 are separated by 13 nucleotidesMPMX19_03096 and MPMX19_03097 overlap by 4 nucleotidesMPMX19_03097 and MPMX19_03098 overlap by 8 nucleotidesMPMX19_03098 and MPMX19_03099 are separated by 162 nucleotides MPMX19_03095: MPMX19_03095 - hypothetical protein, at 366,636 to 367,229 _03095 MPMX19_03096: MPMX19_03096 - hypothetical protein, at 367,243 to 367,566 _03096 MPMX19_03097: MPMX19_03097 - hypothetical protein, at 367,563 to 368,036 _03097 MPMX19_03098: MPMX19_03098 - hypothetical protein, at 368,029 to 369,165 _03098 MPMX19_03099: MPMX19_03099 - hypothetical protein, at 369,328 to 370,107 _03099 Position (kb) 368 369 370Strain fitness (log2 ratio) -2 -1 0 1 2at 367.244 kb on + strandat 367.244 kb on + strandat 367.244 kb on + strandat 367.245 kb on - strandat 367.245 kb on - strandat 367.245 kb on - strandat 367.245 kb on - strandat 367.245 kb on - strandat 367.304 kb on + strand, within MPMX19_03096at 367.304 kb on + strand, within MPMX19_03096at 367.304 kb on + strand, within MPMX19_03096at 367.305 kb on - strand, within MPMX19_03096at 367.305 kb on - strand, within MPMX19_03096at 367.305 kb on - strand, within MPMX19_03096at 367.305 kb on - strand, within MPMX19_03096at 367.554 kb on + strandat 367.554 kb on + strandat 367.555 kb on - strandat 367.810 kb on + strand, within MPMX19_03097at 367.810 kb on + strand, within MPMX19_03097at 367.810 kb on + strand, within MPMX19_03097at 367.810 kb on + strand, within MPMX19_03097at 367.810 kb on + strand, within MPMX19_03097at 367.810 kb on + strand, within MPMX19_03097at 367.810 kb on + strand, within MPMX19_03097at 367.810 kb on + strand, within MPMX19_03097at 367.810 kb on + strand, within MPMX19_03097at 367.811 kb on - strand, within MPMX19_03097at 367.811 kb on - strand, within MPMX19_03097at 367.811 kb on - strand, within MPMX19_03097at 367.811 kb on - strand, within MPMX19_03097at 367.811 kb on - strand, within MPMX19_03097at 367.811 kb on - strand, within MPMX19_03097at 367.858 kb on + strand, within MPMX19_03097at 367.859 kb on - strand, within MPMX19_03097at 367.942 kb on + strand, within MPMX19_03097at 367.942 kb on + strand, within MPMX19_03097at 367.942 kb on + strand, within MPMX19_03097at 367.942 kb on + strand, within MPMX19_03097at 367.943 kb on - strand, within MPMX19_03097at 367.943 kb on - strand, within MPMX19_03097at 367.943 kb on - strand, within MPMX19_03097at 367.943 kb on - strand, within MPMX19_03097at 367.943 kb on - strand, within MPMX19_03097at 367.943 kb on - strand, within MPMX19_03097at 367.992 kb on + strandat 368.031 kb on - strandat 368.282 kb on + strand, within MPMX19_03098at 368.282 kb on + strand, within MPMX19_03098at 368.282 kb on + strand, within MPMX19_03098at 368.282 kb on + strand, within MPMX19_03098at 368.282 kb on + strand, within MPMX19_03098at 368.282 kb on + strand, within MPMX19_03098at 368.283 kb on - strand, within MPMX19_03098at 368.283 kb on - strand, within MPMX19_03098at 368.354 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.537 kb on + strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.538 kb on - strand, within MPMX19_03098at 368.664 kb on - strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.687 kb on + strand, within MPMX19_03098at 368.688 kb on - strand, within MPMX19_03098at 368.688 kb on - strand, within MPMX19_03098at 368.688 kb on - strand, within MPMX19_03098at 368.688 kb on - strand, within MPMX19_03098at 368.688 kb on - strand, within MPMX19_03098at 368.747 kb on + strand, within MPMX19_03098at 369.386 kb on + strandat 369.386 kb on + strandat 369.387 kb on - strandat 369.387 kb on - strandat 369.387 kb on - strandat 369.617 kb on + strand, within MPMX19_03099at 369.617 kb on + strand, within MPMX19_03099at 369.617 kb on + strand, within MPMX19_03099at 369.618 kb on - strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.626 kb on + strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.627 kb on - strand, within MPMX19_03099at 369.695 kb on + strand, within MPMX19_03099at 369.696 kb on - strand, within MPMX19_03099at 369.696 kb on - strand, within MPMX19_03099at 369.696 kb on - strand, within MPMX19_03099at 369.854 kb on + strand, within MPMX19_03099at 369.854 kb on + strand, within MPMX19_03099at 369.854 kb on + strand, within MPMX19_03099at 369.855 kb on - strand, within MPMX19_03099at 369.855 kb on - strand, within MPMX19_03099at 369.873 kb on - strand, within MPMX19_03099at 369.873 kb on - strand, within MPMX19_03099at 369.914 kb on + strand, within MPMX19_03099at 369.914 kb on + strand, within MPMX19_03099at 369.914 kb on + strand, within MPMX19_03099at 369.914 kb on + strand, within MPMX19_03099at 369.914 kb on + strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 369.915 kb on - strand, within MPMX19_03099at 370.031 kb on + strandat 370.031 kb on + strandat 370.031 kb on + strandat 370.032 kb on - strandat 370.107 kb on + strandat 370.107 kb on + strandat 370.108 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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367,244 + +0.8
367,244 + +0.1
367,244 + -0.2
367,245 - -1.7
367,245 - -0.2
367,245 - -0.0
367,245 - +0.1
367,245 - -1.0
367,304 + MPMX19_03096 0.19 +1.1
367,304 + MPMX19_03096 0.19 -0.7
367,304 + MPMX19_03096 0.19 +0.4
367,305 - MPMX19_03096 0.19 -1.1
367,305 - MPMX19_03096 0.19 +0.1
367,305 - MPMX19_03096 0.19 -1.2
367,305 - MPMX19_03096 0.19 -0.2
367,554 + -0.3
367,554 + +0.6
367,555 - +0.1
367,810 + MPMX19_03097 0.52 -0.1
367,810 + MPMX19_03097 0.52 +0.3
367,810 + MPMX19_03097 0.52 -0.9
367,810 + MPMX19_03097 0.52 -0.3
367,810 + MPMX19_03097 0.52 -0.1
367,810 + MPMX19_03097 0.52 -1.4
367,810 + MPMX19_03097 0.52 -0.2
367,810 + MPMX19_03097 0.52 -0.8
367,810 + MPMX19_03097 0.52 +0.6
367,811 - MPMX19_03097 0.52 -1.8
367,811 - MPMX19_03097 0.52 +0.1
367,811 - MPMX19_03097 0.52 -0.4
367,811 - MPMX19_03097 0.52 +0.4
367,811 - MPMX19_03097 0.52 -0.1
367,811 - MPMX19_03097 0.52 +0.4
367,858 + MPMX19_03097 0.62 -1.0
367,859 - MPMX19_03097 0.62 +0.1
367,942 + MPMX19_03097 0.80 -2.4
367,942 + MPMX19_03097 0.80 -0.1
367,942 + MPMX19_03097 0.80 -0.2
367,942 + MPMX19_03097 0.80 +1.1
367,943 - MPMX19_03097 0.80 +0.6
367,943 - MPMX19_03097 0.80 +0.6
367,943 - MPMX19_03097 0.80 +0.8
367,943 - MPMX19_03097 0.80 +0.8
367,943 - MPMX19_03097 0.80 +1.0
367,943 - MPMX19_03097 0.80 -0.4
367,992 + -0.0
368,031 - -0.8
368,282 + MPMX19_03098 0.22 +0.1
368,282 + MPMX19_03098 0.22 -0.0
368,282 + MPMX19_03098 0.22 +2.1
368,282 + MPMX19_03098 0.22 -0.0
368,282 + MPMX19_03098 0.22 -1.6
368,282 + MPMX19_03098 0.22 +0.1
368,283 - MPMX19_03098 0.22 -1.9
368,283 - MPMX19_03098 0.22 -0.9
368,354 + MPMX19_03098 0.29 +1.0
368,537 + MPMX19_03098 0.45 -0.7
368,537 + MPMX19_03098 0.45 -0.0
368,537 + MPMX19_03098 0.45 -1.3
368,537 + MPMX19_03098 0.45 +0.3
368,537 + MPMX19_03098 0.45 -1.3
368,537 + MPMX19_03098 0.45 +0.1
368,537 + MPMX19_03098 0.45 -1.8
368,538 - MPMX19_03098 0.45 -0.2
368,538 - MPMX19_03098 0.45 +0.3
368,538 - MPMX19_03098 0.45 -0.3
368,538 - MPMX19_03098 0.45 +0.6
368,538 - MPMX19_03098 0.45 -0.9
368,538 - MPMX19_03098 0.45 +1.7
368,538 - MPMX19_03098 0.45 -0.7
368,538 - MPMX19_03098 0.45 +0.3
368,664 - MPMX19_03098 0.56 -0.7
368,687 + MPMX19_03098 0.58 -0.9
368,687 + MPMX19_03098 0.58 -0.4
368,687 + MPMX19_03098 0.58 -0.1
368,687 + MPMX19_03098 0.58 -0.5
368,687 + MPMX19_03098 0.58 -1.3
368,687 + MPMX19_03098 0.58 +1.4
368,688 - MPMX19_03098 0.58 -0.9
368,688 - MPMX19_03098 0.58 +0.2
368,688 - MPMX19_03098 0.58 +0.1
368,688 - MPMX19_03098 0.58 -0.6
368,688 - MPMX19_03098 0.58 -0.5
368,747 + MPMX19_03098 0.63 +0.7
369,386 + -0.8
369,386 + -0.9
369,387 - -0.6
369,387 - -1.2
369,387 - -1.0
369,617 + MPMX19_03099 0.37 +0.1
369,617 + MPMX19_03099 0.37 -0.7
369,617 + MPMX19_03099 0.37 -0.9
369,618 - MPMX19_03099 0.37 -0.7
369,626 + MPMX19_03099 0.38 -0.6
369,626 + MPMX19_03099 0.38 +0.3
369,626 + MPMX19_03099 0.38 -1.1
369,626 + MPMX19_03099 0.38 -0.7
369,626 + MPMX19_03099 0.38 +1.6
369,626 + MPMX19_03099 0.38 +0.1
369,626 + MPMX19_03099 0.38 -0.4
369,626 + MPMX19_03099 0.38 -0.7
369,626 + MPMX19_03099 0.38 -0.2
369,626 + MPMX19_03099 0.38 +0.1
369,626 + MPMX19_03099 0.38 -0.2
369,626 + MPMX19_03099 0.38 -1.2
369,626 + MPMX19_03099 0.38 +0.6
369,626 + MPMX19_03099 0.38 +0.2
369,626 + MPMX19_03099 0.38 -0.9
369,626 + MPMX19_03099 0.38 -2.0
369,627 - MPMX19_03099 0.38 -0.9
369,627 - MPMX19_03099 0.38 +1.6
369,627 - MPMX19_03099 0.38 -0.9
369,627 - MPMX19_03099 0.38 -0.3
369,627 - MPMX19_03099 0.38 -1.2
369,627 - MPMX19_03099 0.38 -0.3
369,627 - MPMX19_03099 0.38 +0.1
369,627 - MPMX19_03099 0.38 +1.0
369,627 - MPMX19_03099 0.38 -0.0
369,627 - MPMX19_03099 0.38 -0.4
369,627 - MPMX19_03099 0.38 -0.4
369,627 - MPMX19_03099 0.38 -1.4
369,627 - MPMX19_03099 0.38 +0.3
369,627 - MPMX19_03099 0.38 +1.1
369,627 - MPMX19_03099 0.38 -0.2
369,627 - MPMX19_03099 0.38 -0.3
369,695 + MPMX19_03099 0.47 -0.6
369,696 - MPMX19_03099 0.47 -0.2
369,696 - MPMX19_03099 0.47 -1.7
369,696 - MPMX19_03099 0.47 +1.1
369,854 + MPMX19_03099 0.67 -0.9
369,854 + MPMX19_03099 0.67 -0.0
369,854 + MPMX19_03099 0.67 -1.0
369,855 - MPMX19_03099 0.68 -0.7
369,855 - MPMX19_03099 0.68 -1.7
369,873 - MPMX19_03099 0.70 +0.4
369,873 - MPMX19_03099 0.70 +0.1
369,914 + MPMX19_03099 0.75 +0.2
369,914 + MPMX19_03099 0.75 +1.7
369,914 + MPMX19_03099 0.75 -1.4
369,914 + MPMX19_03099 0.75 +1.1
369,914 + MPMX19_03099 0.75 -1.4
369,915 - MPMX19_03099 0.75 +0.7
369,915 - MPMX19_03099 0.75 +0.5
369,915 - MPMX19_03099 0.75 -0.8
369,915 - MPMX19_03099 0.75 -1.2
369,915 - MPMX19_03099 0.75 -1.4
369,915 - MPMX19_03099 0.75 +1.7
369,915 - MPMX19_03099 0.75 -1.4
369,915 - MPMX19_03099 0.75 +0.3
370,031 + -0.9
370,031 + -0.0
370,031 + +0.6
370,032 - -2.5
370,107 + +0.4
370,107 + +1.3
370,108 - -0.0

Or see this region's nucleotide sequence