Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03081 and MPMX19_03082 are separated by 87 nucleotides MPMX19_03082 and MPMX19_03083 are separated by 235 nucleotides MPMX19_03083 and MPMX19_03084 are separated by 92 nucleotides
MPMX19_03081: MPMX19_03081 - Protein FecR, at 350,140 to 351,195
_03081
MPMX19_03082: MPMX19_03082 - ECF RNA polymerase sigma factor SigE, at 351,283 to 351,807
_03082
MPMX19_03083: MPMX19_03083 - hypothetical protein, at 352,043 to 352,249
_03083
MPMX19_03084: MPMX19_03084 - Catalase-peroxidase, at 352,342 to 354,573
_03084
Position (kb)
352
353 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 351.214 kb on + strand at 351.214 kb on + strand at 351.215 kb on - strand at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.345 kb on - strand, within MPMX19_03082 at 351.345 kb on - strand, within MPMX19_03082 at 351.392 kb on + strand, within MPMX19_03082 at 351.393 kb on - strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.789 kb on + strand at 351.789 kb on + strand at 351.790 kb on - strand at 351.790 kb on - strand at 351.790 kb on - strand at 351.790 kb on - strand at 351.790 kb on - strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.939 kb on - strand at 351.953 kb on + strand at 351.972 kb on - strand at 352.167 kb on + strand, within MPMX19_03083 at 352.167 kb on + strand, within MPMX19_03083 at 352.167 kb on + strand, within MPMX19_03083 at 352.167 kb on + strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 351,214 + +0.4 351,214 + -1.3 351,215 - -0.4 351,344 + MPMX19_03082 0.12 -2.5 351,344 + MPMX19_03082 0.12 +0.2 351,344 + MPMX19_03082 0.12 -0.1 351,344 + MPMX19_03082 0.12 +0.5 351,344 + MPMX19_03082 0.12 -1.0 351,344 + MPMX19_03082 0.12 +1.2 351,344 + MPMX19_03082 0.12 +0.4 351,345 - MPMX19_03082 0.12 +0.6 351,345 - MPMX19_03082 0.12 -1.4 351,392 + MPMX19_03082 0.21 -2.0 351,393 - MPMX19_03082 0.21 -2.0 351,413 + MPMX19_03082 0.25 +0.1 351,413 + MPMX19_03082 0.25 +0.2 351,413 + MPMX19_03082 0.25 -0.4 351,413 + MPMX19_03082 0.25 -0.7 351,413 + MPMX19_03082 0.25 -0.1 351,413 + MPMX19_03082 0.25 -1.5 351,413 + MPMX19_03082 0.25 +0.2 351,413 + MPMX19_03082 0.25 -0.1 351,413 + MPMX19_03082 0.25 +0.8 351,413 + MPMX19_03082 0.25 -1.0 351,413 + MPMX19_03082 0.25 -1.9 351,414 - MPMX19_03082 0.25 -0.9 351,414 - MPMX19_03082 0.25 -0.7 351,414 - MPMX19_03082 0.25 -0.8 351,414 - MPMX19_03082 0.25 -1.1 351,414 - MPMX19_03082 0.25 -0.0 351,414 - MPMX19_03082 0.25 +0.4 351,414 - MPMX19_03082 0.25 +1.2 351,614 + MPMX19_03082 0.63 +0.5 351,614 + MPMX19_03082 0.63 -1.2 351,614 + MPMX19_03082 0.63 -0.2 351,614 + MPMX19_03082 0.63 -0.6 351,614 + MPMX19_03082 0.63 +0.6 351,615 - MPMX19_03082 0.63 -1.3 351,615 - MPMX19_03082 0.63 -0.7 351,615 - MPMX19_03082 0.63 +0.6 351,615 - MPMX19_03082 0.63 -1.9 351,615 - MPMX19_03082 0.63 -0.0 351,615 - MPMX19_03082 0.63 +1.7 351,615 - MPMX19_03082 0.63 -1.4 351,615 - MPMX19_03082 0.63 +0.6 351,615 - MPMX19_03082 0.63 +0.6 351,789 + -1.9 351,789 + +0.6 351,790 - -0.4 351,790 - -0.6 351,790 - +0.0 351,790 - -2.3 351,790 - -0.3 351,936 + -1.2 351,936 + +0.8 351,936 + -1.0 351,936 + -0.7 351,936 + -1.0 351,936 + -1.4 351,936 + -0.9 351,939 - -1.2 351,953 + -1.4 351,972 - +0.4 352,167 + MPMX19_03083 0.60 -0.9 352,167 + MPMX19_03083 0.60 +2.0 352,167 + MPMX19_03083 0.60 -1.0 352,167 + MPMX19_03083 0.60 +0.4 352,168 - MPMX19_03083 0.60 +0.4 352,168 - MPMX19_03083 0.60 -1.0 352,168 - MPMX19_03083 0.60 -0.7 352,168 - MPMX19_03083 0.60 -1.4 352,168 - MPMX19_03083 0.60 +1.0 352,262 + -1.9 352,262 + -0.0 352,262 + +0.8 352,262 + +0.3 352,262 + +0.0 352,262 + +0.1 352,262 + -2.0 352,262 + -0.2 352,262 + -1.9 352,262 + +1.4 352,262 + +0.3 352,262 + -0.8 352,262 + -1.9 352,262 + -1.4 352,262 + +0.0 352,262 + -0.1 352,262 + -1.1 352,262 + -1.9 352,262 + +0.1 352,262 + -0.4 352,262 + +0.7 352,263 - -0.2 352,263 - -1.6 352,263 - -1.0 352,263 - -1.9 352,263 - +0.1 352,263 - -1.3 352,263 - +0.8 352,263 - +0.3 352,263 - -0.9 352,263 - +0.8 352,263 - -0.2 352,263 - -1.0 352,263 - +0.8 352,445 + -2.4 352,445 + -0.8 352,445 + +1.4 352,445 + -1.0 352,445 + -0.9 352,445 + -0.9 352,445 + +0.8 352,445 + -0.6 352,445 + -0.2 352,445 + +0.4 352,445 + -0.7 352,445 + -0.1 352,445 + +1.5 352,445 + -1.0 352,445 + +0.6 352,445 + -0.7 352,445 + -0.7 352,446 - -0.4 352,446 - -1.0 352,446 - -0.2 352,446 - +1.1 352,446 - -0.0 352,446 - -0.9 352,446 - -1.6 352,446 - -0.1 352,446 - -1.3 352,446 - -0.7 352,446 - +0.3 352,446 - -0.6 352,446 - -0.3 352,446 - -0.4 352,446 - +0.3 352,547 + -1.4 352,547 + -1.5 352,547 + -1.7 352,547 + -0.7 352,547 + +0.0 352,547 + -0.4 352,547 + -0.4 352,547 + -1.0 352,547 + -1.3 352,548 - -0.6 352,548 - +0.2 352,548 - +0.3 352,548 - +0.6 352,548 - -1.9 352,548 - -0.4 352,548 - +0.2 352,548 - -1.0 352,548 - +0.6 352,793 + MPMX19_03084 0.20 -0.7 352,793 + MPMX19_03084 0.20 +1.1 352,793 + MPMX19_03084 0.20 +0.5 352,793 + MPMX19_03084 0.20 -0.9 352,793 + MPMX19_03084 0.20 -1.4 352,793 + MPMX19_03084 0.20 -0.1 352,793 + MPMX19_03084 0.20 +0.6 352,793 + MPMX19_03084 0.20 +0.5 352,793 + MPMX19_03084 0.20 -1.0 352,793 + MPMX19_03084 0.20 -0.0 352,793 + MPMX19_03084 0.20 -1.8 352,793 + MPMX19_03084 0.20 +0.6 352,793 + MPMX19_03084 0.20 -0.7 352,793 + MPMX19_03084 0.20 -1.4 352,793 + MPMX19_03084 0.20 -0.2 352,793 + MPMX19_03084 0.20 -0.1 352,793 + MPMX19_03084 0.20 -0.8 352,793 + MPMX19_03084 0.20 -0.7 352,794 - MPMX19_03084 0.20 -0.7 352,794 - MPMX19_03084 0.20 -1.4 352,794 - MPMX19_03084 0.20 -1.3 352,794 - MPMX19_03084 0.20 +0.1 352,794 - MPMX19_03084 0.20 -0.0 352,794 - MPMX19_03084 0.20 -0.2
Or see this region's nucleotide sequence