Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03083

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03081 and MPMX19_03082 are separated by 87 nucleotidesMPMX19_03082 and MPMX19_03083 are separated by 235 nucleotidesMPMX19_03083 and MPMX19_03084 are separated by 92 nucleotides MPMX19_03081: MPMX19_03081 - Protein FecR, at 350,140 to 351,195 _03081 MPMX19_03082: MPMX19_03082 - ECF RNA polymerase sigma factor SigE, at 351,283 to 351,807 _03082 MPMX19_03083: MPMX19_03083 - hypothetical protein, at 352,043 to 352,249 _03083 MPMX19_03084: MPMX19_03084 - Catalase-peroxidase, at 352,342 to 354,573 _03084 Position (kb) 352 353Strain fitness (log2 ratio) -2 -1 0 1 2at 351.214 kb on + strandat 351.214 kb on + strandat 351.215 kb on - strandat 351.344 kb on + strand, within MPMX19_03082at 351.344 kb on + strand, within MPMX19_03082at 351.344 kb on + strand, within MPMX19_03082at 351.344 kb on + strand, within MPMX19_03082at 351.344 kb on + strand, within MPMX19_03082at 351.344 kb on + strand, within MPMX19_03082at 351.344 kb on + strand, within MPMX19_03082at 351.345 kb on - strand, within MPMX19_03082at 351.345 kb on - strand, within MPMX19_03082at 351.392 kb on + strand, within MPMX19_03082at 351.393 kb on - strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.413 kb on + strand, within MPMX19_03082at 351.414 kb on - strand, within MPMX19_03082at 351.414 kb on - strand, within MPMX19_03082at 351.414 kb on - strand, within MPMX19_03082at 351.414 kb on - strand, within MPMX19_03082at 351.414 kb on - strand, within MPMX19_03082at 351.414 kb on - strand, within MPMX19_03082at 351.414 kb on - strand, within MPMX19_03082at 351.614 kb on + strand, within MPMX19_03082at 351.614 kb on + strand, within MPMX19_03082at 351.614 kb on + strand, within MPMX19_03082at 351.614 kb on + strand, within MPMX19_03082at 351.614 kb on + strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.615 kb on - strand, within MPMX19_03082at 351.789 kb on + strandat 351.789 kb on + strandat 351.790 kb on - strandat 351.790 kb on - strandat 351.790 kb on - strandat 351.790 kb on - strandat 351.790 kb on - strandat 351.936 kb on + strandat 351.936 kb on + strandat 351.936 kb on + strandat 351.936 kb on + strandat 351.936 kb on + strandat 351.936 kb on + strandat 351.936 kb on + strandat 351.939 kb on - strandat 351.953 kb on + strandat 351.972 kb on - strandat 352.167 kb on + strand, within MPMX19_03083at 352.167 kb on + strand, within MPMX19_03083at 352.167 kb on + strand, within MPMX19_03083at 352.167 kb on + strand, within MPMX19_03083at 352.168 kb on - strand, within MPMX19_03083at 352.168 kb on - strand, within MPMX19_03083at 352.168 kb on - strand, within MPMX19_03083at 352.168 kb on - strand, within MPMX19_03083at 352.168 kb on - strand, within MPMX19_03083at 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.262 kb on + strandat 352.263 kb on - strandat 352.263 kb on - strandat 352.263 kb on - strandat 352.263 kb on - strandat 352.263 kb on - strandat 352.263 kb on - strandat 352.263 kb on - strandat 352.263 kb on - strandat 352.263 kb on - strandat 352.263 kb on - strandat 352.263 kb on - strandat 352.263 kb on - strandat 352.263 kb on - strandat 352.445 kb on + strandat 352.445 kb on + strandat 352.445 kb on + strandat 352.445 kb on + strandat 352.445 kb on + strandat 352.445 kb on + strandat 352.445 kb on + strandat 352.445 kb on + strandat 352.445 kb on + strandat 352.445 kb on + strandat 352.445 kb on + strandat 352.445 kb on + strandat 352.445 kb on + strandat 352.445 kb on + strandat 352.445 kb on + strandat 352.445 kb on + strandat 352.445 kb on + strandat 352.446 kb on - strandat 352.446 kb on - strandat 352.446 kb on - strandat 352.446 kb on - strandat 352.446 kb on - strandat 352.446 kb on - strandat 352.446 kb on - strandat 352.446 kb on - strandat 352.446 kb on - strandat 352.446 kb on - strandat 352.446 kb on - strandat 352.446 kb on - strandat 352.446 kb on - strandat 352.446 kb on - strandat 352.446 kb on - strandat 352.547 kb on + strandat 352.547 kb on + strandat 352.547 kb on + strandat 352.547 kb on + strandat 352.547 kb on + strandat 352.547 kb on + strandat 352.547 kb on + strandat 352.547 kb on + strandat 352.547 kb on + strandat 352.548 kb on - strandat 352.548 kb on - strandat 352.548 kb on - strandat 352.548 kb on - strandat 352.548 kb on - strandat 352.548 kb on - strandat 352.548 kb on - strandat 352.548 kb on - strandat 352.548 kb on - strandat 352.793 kb on + strand, within MPMX19_03084at 352.793 kb on + strand, within MPMX19_03084at 352.793 kb on + strand, within MPMX19_03084at 352.793 kb on + strand, within MPMX19_03084at 352.793 kb on + strand, within MPMX19_03084at 352.793 kb on + strand, within MPMX19_03084at 352.793 kb on + strand, within MPMX19_03084at 352.793 kb on + strand, within MPMX19_03084at 352.793 kb on + strand, within MPMX19_03084at 352.793 kb on + strand, within MPMX19_03084at 352.793 kb on + strand, within MPMX19_03084at 352.793 kb on + strand, within MPMX19_03084at 352.793 kb on + strand, within MPMX19_03084at 352.793 kb on + strand, within MPMX19_03084at 352.793 kb on + strand, within MPMX19_03084at 352.793 kb on + strand, within MPMX19_03084at 352.793 kb on + strand, within MPMX19_03084at 352.793 kb on + strand, within MPMX19_03084at 352.794 kb on - strand, within MPMX19_03084at 352.794 kb on - strand, within MPMX19_03084at 352.794 kb on - strand, within MPMX19_03084at 352.794 kb on - strand, within MPMX19_03084at 352.794 kb on - strand, within MPMX19_03084at 352.794 kb on - strand, within MPMX19_03084

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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351,214 + +0.4
351,214 + -1.3
351,215 - -0.4
351,344 + MPMX19_03082 0.12 -2.5
351,344 + MPMX19_03082 0.12 +0.2
351,344 + MPMX19_03082 0.12 -0.1
351,344 + MPMX19_03082 0.12 +0.5
351,344 + MPMX19_03082 0.12 -1.0
351,344 + MPMX19_03082 0.12 +1.2
351,344 + MPMX19_03082 0.12 +0.4
351,345 - MPMX19_03082 0.12 +0.6
351,345 - MPMX19_03082 0.12 -1.4
351,392 + MPMX19_03082 0.21 -2.0
351,393 - MPMX19_03082 0.21 -2.0
351,413 + MPMX19_03082 0.25 +0.1
351,413 + MPMX19_03082 0.25 +0.2
351,413 + MPMX19_03082 0.25 -0.4
351,413 + MPMX19_03082 0.25 -0.7
351,413 + MPMX19_03082 0.25 -0.1
351,413 + MPMX19_03082 0.25 -1.5
351,413 + MPMX19_03082 0.25 +0.2
351,413 + MPMX19_03082 0.25 -0.1
351,413 + MPMX19_03082 0.25 +0.8
351,413 + MPMX19_03082 0.25 -1.0
351,413 + MPMX19_03082 0.25 -1.9
351,414 - MPMX19_03082 0.25 -0.9
351,414 - MPMX19_03082 0.25 -0.7
351,414 - MPMX19_03082 0.25 -0.8
351,414 - MPMX19_03082 0.25 -1.1
351,414 - MPMX19_03082 0.25 -0.0
351,414 - MPMX19_03082 0.25 +0.4
351,414 - MPMX19_03082 0.25 +1.2
351,614 + MPMX19_03082 0.63 +0.5
351,614 + MPMX19_03082 0.63 -1.2
351,614 + MPMX19_03082 0.63 -0.2
351,614 + MPMX19_03082 0.63 -0.6
351,614 + MPMX19_03082 0.63 +0.6
351,615 - MPMX19_03082 0.63 -1.3
351,615 - MPMX19_03082 0.63 -0.7
351,615 - MPMX19_03082 0.63 +0.6
351,615 - MPMX19_03082 0.63 -1.9
351,615 - MPMX19_03082 0.63 -0.0
351,615 - MPMX19_03082 0.63 +1.7
351,615 - MPMX19_03082 0.63 -1.4
351,615 - MPMX19_03082 0.63 +0.6
351,615 - MPMX19_03082 0.63 +0.6
351,789 + -1.9
351,789 + +0.6
351,790 - -0.4
351,790 - -0.6
351,790 - +0.0
351,790 - -2.3
351,790 - -0.3
351,936 + -1.2
351,936 + +0.8
351,936 + -1.0
351,936 + -0.7
351,936 + -1.0
351,936 + -1.4
351,936 + -0.9
351,939 - -1.2
351,953 + -1.4
351,972 - +0.4
352,167 + MPMX19_03083 0.60 -0.9
352,167 + MPMX19_03083 0.60 +2.0
352,167 + MPMX19_03083 0.60 -1.0
352,167 + MPMX19_03083 0.60 +0.4
352,168 - MPMX19_03083 0.60 +0.4
352,168 - MPMX19_03083 0.60 -1.0
352,168 - MPMX19_03083 0.60 -0.7
352,168 - MPMX19_03083 0.60 -1.4
352,168 - MPMX19_03083 0.60 +1.0
352,262 + -1.9
352,262 + -0.0
352,262 + +0.8
352,262 + +0.3
352,262 + +0.0
352,262 + +0.1
352,262 + -2.0
352,262 + -0.2
352,262 + -1.9
352,262 + +1.4
352,262 + +0.3
352,262 + -0.8
352,262 + -1.9
352,262 + -1.4
352,262 + +0.0
352,262 + -0.1
352,262 + -1.1
352,262 + -1.9
352,262 + +0.1
352,262 + -0.4
352,262 + +0.7
352,263 - -0.2
352,263 - -1.6
352,263 - -1.0
352,263 - -1.9
352,263 - +0.1
352,263 - -1.3
352,263 - +0.8
352,263 - +0.3
352,263 - -0.9
352,263 - +0.8
352,263 - -0.2
352,263 - -1.0
352,263 - +0.8
352,445 + -2.4
352,445 + -0.8
352,445 + +1.4
352,445 + -1.0
352,445 + -0.9
352,445 + -0.9
352,445 + +0.8
352,445 + -0.6
352,445 + -0.2
352,445 + +0.4
352,445 + -0.7
352,445 + -0.1
352,445 + +1.5
352,445 + -1.0
352,445 + +0.6
352,445 + -0.7
352,445 + -0.7
352,446 - -0.4
352,446 - -1.0
352,446 - -0.2
352,446 - +1.1
352,446 - -0.0
352,446 - -0.9
352,446 - -1.6
352,446 - -0.1
352,446 - -1.3
352,446 - -0.7
352,446 - +0.3
352,446 - -0.6
352,446 - -0.3
352,446 - -0.4
352,446 - +0.3
352,547 + -1.4
352,547 + -1.5
352,547 + -1.7
352,547 + -0.7
352,547 + +0.0
352,547 + -0.4
352,547 + -0.4
352,547 + -1.0
352,547 + -1.3
352,548 - -0.6
352,548 - +0.2
352,548 - +0.3
352,548 - +0.6
352,548 - -1.9
352,548 - -0.4
352,548 - +0.2
352,548 - -1.0
352,548 - +0.6
352,793 + MPMX19_03084 0.20 -0.7
352,793 + MPMX19_03084 0.20 +1.1
352,793 + MPMX19_03084 0.20 +0.5
352,793 + MPMX19_03084 0.20 -0.9
352,793 + MPMX19_03084 0.20 -1.4
352,793 + MPMX19_03084 0.20 -0.1
352,793 + MPMX19_03084 0.20 +0.6
352,793 + MPMX19_03084 0.20 +0.5
352,793 + MPMX19_03084 0.20 -1.0
352,793 + MPMX19_03084 0.20 -0.0
352,793 + MPMX19_03084 0.20 -1.8
352,793 + MPMX19_03084 0.20 +0.6
352,793 + MPMX19_03084 0.20 -0.7
352,793 + MPMX19_03084 0.20 -1.4
352,793 + MPMX19_03084 0.20 -0.2
352,793 + MPMX19_03084 0.20 -0.1
352,793 + MPMX19_03084 0.20 -0.8
352,793 + MPMX19_03084 0.20 -0.7
352,794 - MPMX19_03084 0.20 -0.7
352,794 - MPMX19_03084 0.20 -1.4
352,794 - MPMX19_03084 0.20 -1.3
352,794 - MPMX19_03084 0.20 +0.1
352,794 - MPMX19_03084 0.20 -0.0
352,794 - MPMX19_03084 0.20 -0.2

Or see this region's nucleotide sequence